View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0760_low_63 (Length: 252)
Name: NF0760_low_63
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 12867769 - 12867563
Alignment:
| Q |
28 |
gaagtgatattaaaatcaacattccatgttttgttttgatcaacaaaaagagtaacctttcttcctttcatcctatgcagatatttcttggcaaattcaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||| | ||||| |
|
|
| T |
12867769 |
gaagtgatattaaaatcaacattccatgttttgttttgatcaacaaaaagagtaacctttcttcctttcatccta-gaataaatttact------ttcaa |
12867677 |
T |
|
| Q |
128 |
atggtataccctgtgttggattattggttttcacactaaaaaatcagtaatacatcttagaataaataaaaaagctaaatgaatgcaatttctaactttc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12867676 |
atggtataccctgtgttggattattggttttcacattaaaaaatcagtaatacatcttagaataaataaaaaagctaaatgaatgcaatttctaactttc |
12867577 |
T |
|
| Q |
228 |
aattcacacacgta |
241 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
12867576 |
aactcacacacgta |
12867563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 49744081 - 49743871
Alignment:
| Q |
29 |
aagtgatattaaaatcaacattccatgttttgttttgatcaacaaaaagagtaacctttcttcctttcatcctatgcagatatttcttggcaaattcaaa |
128 |
Q |
| |
|
|||||| ||| |||||| ||||||||| | ||| |||||||||||||||||||| |||||||||| |||||| ||||||| |||||| |||||||||| |
|
|
| T |
49744081 |
aagtgagattcaaatcagcattccatggtctgtcttgatcaacaaaaagagtaatatttcttccttccatcctgtgcagatgtttcttagcaaattcaat |
49743982 |
T |
|
| Q |
129 |
tggtataccctgtgttggattattggttttcacactaaaaaatcagtaatacatcttagaataaata--aaaaagctaaatgaatgcaatttctaacttt |
226 |
Q |
| |
|
|||||| |||| | || ||| ||| |||| ||| ||||| ||||| |||||| || |||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
49743981 |
tggtatgccctattttagatcatt-gtttatacattaaaatatcagcaatacaactcagaataaatactaaaaggctaaatggatgcaatttctaacttt |
49743883 |
T |
|
| Q |
227 |
caattcacacac |
238 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
49743882 |
caatgcacacac |
49743871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2899 times since January 2019
Visitors: 4804