View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_67 (Length: 251)

Name: NF0760_low_67
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_67
NF0760_low_67
[»] chr4 (39 HSPs)
chr4 (1-77)||(52491632-52491708)
chr4 (1-77)||(1290223-1290299)
chr4 (1-77)||(49308052-49308127)
chr4 (1-74)||(8758862-8758935)
chr4 (2-77)||(25684934-25685009)
chr4 (1-75)||(19750600-19750673)
chr4 (1-75)||(19789133-19789206)
chr4 (29-77)||(1835155-1835203)
chr4 (1-77)||(17388236-17388311)
chr4 (2-77)||(10471414-10471489)
chr4 (2-77)||(25685848-25685923)
chr4 (20-77)||(10470546-10470603)
chr4 (1-74)||(12129626-12129699)
chr4 (1-77)||(1963196-1963272)
chr4 (1-77)||(8757675-8757750)
chr4 (1-77)||(17382993-17383068)
chr4 (1-77)||(26421647-26421722)
chr4 (1-77)||(31599789-31599865)
chr4 (1-77)||(31601010-31601086)
chr4 (29-77)||(48780248-48780296)
chr4 (27-77)||(5526177-5526226)
chr4 (29-77)||(13386585-13386634)
chr4 (28-77)||(48781097-48781146)
chr4 (1-77)||(1964466-1964542)
chr4 (2-77)||(13386014-13386090)
chr4 (1-77)||(49306775-49306850)
chr4 (27-77)||(3928909-3928959)
chr4 (27-77)||(14868890-14868939)
chr4 (27-77)||(14876995-14877044)
chr4 (30-74)||(8155741-8155783)
chr4 (1-74)||(35935558-35935631)
chr4 (29-77)||(1834119-1834167)
chr4 (29-77)||(5525360-5525407)
chr4 (28-74)||(35934347-35934391)
chr4 (27-77)||(13509410-13509459)
chr4 (1-74)||(55602379-55602451)
chr4 (1-77)||(10448285-10448361)
chr4 (27-67)||(21539122-21539162)
chr4 (30-74)||(55603585-55603628)
[»] chr3 (43 HSPs)
chr3 (1-77)||(29931226-29931302)
chr3 (1-77)||(29980380-29980456)
chr3 (1-77)||(54539755-54539831)
chr3 (1-74)||(7267647-7267719)
chr3 (1-77)||(19984849-19984925)
chr3 (1-77)||(22776837-22776913)
chr3 (1-77)||(29932724-29932799)
chr3 (1-77)||(29981878-29981953)
chr3 (28-77)||(535834-535883)
chr3 (1-74)||(7268852-7268924)
chr3 (1-77)||(12700175-12700249)
chr3 (1-77)||(7758402-7758478)
chr3 (1-77)||(54540815-54540891)
chr3 (1-77)||(55192020-55192095)
chr3 (1-76)||(8456479-8456553)
chr3 (27-77)||(47615599-47615649)
chr3 (27-77)||(52840655-52840705)
chr3 (1-73)||(24516464-24516536)
chr3 (29-77)||(47609697-47609745)
chr3 (2-74)||(47610606-47610678)
chr3 (2-77)||(5001200-5001275)
chr3 (2-77)||(51469972-51470047)
chr3 (27-77)||(47614185-47614235)
chr3 (3-77)||(49216247-49216321)
chr3 (1-77)||(12703525-12703600)
chr3 (29-77)||(51038843-51038891)
chr3 (1-77)||(53614819-53614895)
chr3 (6-77)||(11671371-11671441)
chr3 (27-77)||(5029734-5029783)
chr3 (27-77)||(19986123-19986173)
chr3 (31-77)||(51470510-51470555)
chr3 (29-77)||(534499-534547)
chr3 (1-77)||(51037536-51037611)
chr3 (29-68)||(6170281-6170320)
chr3 (27-70)||(22775783-22775825)
chr3 (30-77)||(23769857-23769904)
chr3 (27-77)||(28262193-28262242)
chr3 (27-77)||(28263162-28263212)
chr3 (27-77)||(52276304-52276354)
chr3 (27-77)||(52281598-52281648)
chr3 (1-77)||(46719941-46720017)
chr3 (1-77)||(46721245-46721321)
chr3 (1-77)||(52839037-52839113)
[»] chr2 (32 HSPs)
chr2 (1-77)||(18868924-18869000)
chr2 (1-77)||(7899907-7899983)
chr2 (1-77)||(22848191-22848267)
chr2 (1-77)||(23869560-23869635)
chr2 (1-77)||(36449778-36449854)
chr2 (28-77)||(11938840-11938889)
chr2 (1-77)||(38840518-38840594)
chr2 (1-77)||(18299373-18299449)
chr2 (1-77)||(18904367-18904443)
chr2 (1-77)||(18906012-18906088)
chr2 (2-74)||(36450947-36451018)
chr2 (1-74)||(13567975-13568048)
chr2 (29-77)||(18797246-18797295)
chr2 (1-77)||(11258836-11258912)
chr2 (1-77)||(41879237-41879313)
chr2 (27-77)||(1034520-1034570)
chr2 (1-74)||(7898694-7898767)
chr2 (1-77)||(16446154-16446230)
chr2 (1-77)||(41878092-41878170)
chr2 (1-77)||(802616-802691)
chr2 (1-76)||(13030293-13030365)
chr2 (1-76)||(18300749-18300822)
chr2 (1-77)||(22587979-22588054)
chr2 (1-77)||(38839242-38839318)
chr2 (30-77)||(11257622-11257669)
chr2 (30-77)||(13570611-13570658)
chr2 (27-77)||(21837306-21837354)
chr2 (27-76)||(1033212-1033260)
chr2 (1-57)||(32739643-32739699)
chr2 (27-77)||(21837070-21837118)
chr2 (1-64)||(18869188-18869252)
chr2 (1-57)||(24475244-24475300)
[»] chr8 (39 HSPs)
chr8 (1-74)||(11287779-11287852)
chr8 (1-76)||(18979145-18979220)
chr8 (1-77)||(10007788-10007864)
chr8 (29-77)||(22221417-22221465)
chr8 (29-77)||(22227759-22227807)
chr8 (1-77)||(5513982-5514057)
chr8 (1-77)||(30335639-30335715)
chr8 (1-77)||(45114541-45114617)
chr8 (30-77)||(11288914-11288961)
chr8 (27-77)||(10006344-10006394)
chr8 (1-77)||(32207350-32207424)
chr8 (1-77)||(12353386-12353460)
chr8 (2-77)||(1823552-1823627)
chr8 (1-72)||(1824103-1824174)
chr8 (2-77)||(1857997-1858072)
chr8 (1-72)||(1858548-1858619)
chr8 (3-74)||(29968364-29968434)
chr8 (27-77)||(24483143-24483193)
chr8 (1-77)||(5514295-5514370)
chr8 (1-77)||(12351921-12351997)
chr8 (1-68)||(18970920-18970986)
chr8 (1-68)||(18978029-18978095)
chr8 (30-77)||(43661877-43661924)
chr8 (27-77)||(11456638-11456688)
chr8 (27-77)||(32968456-32968506)
chr8 (27-77)||(36249552-36249602)
chr8 (27-77)||(38974795-38974845)
chr8 (27-77)||(38980095-38980145)
chr8 (27-77)||(39005893-39005943)
chr8 (27-77)||(39011192-39011242)
chr8 (29-77)||(22220388-22220436)
chr8 (1-77)||(24122883-24122958)
chr8 (17-57)||(24488720-24488760)
chr8 (1-77)||(30336526-30336602)
chr8 (27-77)||(32973987-32974037)
chr8 (1-74)||(11282011-11282084)
chr8 (1-74)||(40471172-40471244)
chr8 (29-77)||(23170052-23170098)
chr8 (1-77)||(42982682-42982758)
[»] chr5 (28 HSPs)
chr5 (1-77)||(19752912-19752987)
chr5 (1-77)||(1796054-1796130)
chr5 (1-77)||(22940647-22940723)
chr5 (1-77)||(25523069-25523145)
chr5 (1-77)||(28538676-28538752)
chr5 (1-77)||(19754155-19754232)
chr5 (1-77)||(16650880-16650956)
chr5 (1-77)||(18486927-18487003)
chr5 (1-77)||(20214196-20214271)
chr5 (29-77)||(25056434-25056482)
chr5 (1-77)||(33160311-33160387)
chr5 (1-77)||(40255697-40255773)
chr5 (1-74)||(20216788-20216861)
chr5 (1-74)||(28539845-28539917)
chr5 (1-77)||(33158098-33158174)
chr5 (1-77)||(36486513-36486589)
chr5 (27-77)||(5730441-5730492)
chr5 (30-77)||(5778890-5778937)
chr5 (27-77)||(18485138-18485188)
chr5 (29-75)||(36485302-36485348)
chr5 (29-77)||(5777901-5777947)
chr5 (1-74)||(24332916-24332989)
chr5 (1-77)||(25524152-25524229)
chr5 (3-56)||(34893686-34893739)
chr5 (28-77)||(31576493-31576542)
chr5 (1-57)||(7311610-7311666)
chr5 (1-77)||(18154494-18154569)
chr5 (1-77)||(42196225-42196301)
[»] chr7 (31 HSPs)
chr7 (1-77)||(18371424-18371500)
chr7 (5-77)||(20163585-20163657)
chr7 (1-77)||(22630477-22630553)
chr7 (1-77)||(48934928-48935004)
chr7 (2-77)||(3227620-3227695)
chr7 (2-77)||(31949828-31949903)
chr7 (2-77)||(17782579-17782654)
chr7 (27-77)||(7501903-7501953)
chr7 (29-75)||(17781663-17781709)
chr7 (28-77)||(127337-127385)
chr7 (1-77)||(31659622-31659699)
chr7 (1-74)||(42886311-42886384)
chr7 (1-77)||(7500455-7500530)
chr7 (2-77)||(31949322-31949397)
chr7 (30-77)||(47525421-47525468)
chr7 (1-74)||(11662576-11662649)
chr7 (1-77)||(21505416-21505490)
chr7 (1-77)||(11658379-11658455)
chr7 (1-57)||(18372482-18372538)
chr7 (1-57)||(34351512-34351568)
chr7 (1-72)||(14999180-14999249)
chr7 (27-70)||(47524532-47524575)
chr7 (2-76)||(3227109-3227182)
chr7 (27-77)||(34174034-34174083)
chr7 (29-77)||(769413-769461)
chr7 (30-77)||(47369781-47369828)
chr7 (29-74)||(128654-128699)
chr7 (28-77)||(34352838-34352887)
chr7 (1-57)||(597309-597364)
chr7 (29-77)||(31661062-31661110)
chr7 (29-77)||(32253451-32253499)
[»] chr6 (21 HSPs)
chr6 (1-77)||(7316319-7316395)
chr6 (1-77)||(16704522-16704598)
chr6 (2-77)||(3722533-3722608)
chr6 (2-77)||(8659265-8659340)
chr6 (2-77)||(8821873-8821948)
chr6 (27-77)||(7314880-7314930)
chr6 (29-77)||(3721612-3721660)
chr6 (29-77)||(8660256-8660304)
chr6 (6-77)||(26574619-26574690)
chr6 (29-74)||(34834632-34834677)
chr6 (1-77)||(6842308-6842384)
chr6 (1-77)||(14822360-14822436)
chr6 (1-77)||(27322093-27322168)
chr6 (1-74)||(1829628-1829701)
chr6 (29-77)||(16703570-16703616)
chr6 (29-77)||(8822846-8822894)
chr6 (1-77)||(27437828-27437904)
chr6 (29-75)||(26717137-26717183)
chr6 (1-77)||(10784592-10784669)
chr6 (1-77)||(14823600-14823677)
chr6 (1-57)||(17496817-17496873)
[»] chr1 (38 HSPs)
chr1 (29-77)||(35594217-35594265)
chr1 (1-77)||(39699792-39699867)
chr1 (1-77)||(52274968-52275044)
chr1 (1-74)||(24426100-24426173)
chr1 (1-74)||(37526902-37526975)
chr1 (1-77)||(14999285-14999360)
chr1 (1-77)||(23980491-23980567)
chr1 (1-77)||(24422800-24422876)
chr1 (1-77)||(36613929-36614005)
chr1 (1-77)||(51685790-51685866)
chr1 (29-77)||(52827347-52827395)
chr1 (2-77)||(41364829-41364903)
chr1 (1-74)||(45149996-45150068)
chr1 (4-77)||(50681632-50681705)
chr1 (1-77)||(7674528-7674602)
chr1 (1-77)||(11436042-11436118)
chr1 (1-77)||(11437224-11437300)
chr1 (1-77)||(33088642-33088718)
chr1 (1-77)||(39698563-39698639)
chr1 (1-77)||(45157234-45157309)
chr1 (1-77)||(36612853-36612928)
chr1 (1-77)||(45148581-45148656)
chr1 (1-77)||(51684366-51684442)
chr1 (2-74)||(52828096-52828168)
chr1 (30-77)||(41366184-41366231)
chr1 (4-77)||(39222501-39222575)
chr1 (1-74)||(39153141-39153214)
chr1 (1-74)||(43058789-43058861)
chr1 (1-77)||(35067027-35067103)
chr1 (31-77)||(39221358-39221405)
chr1 (1-74)||(39151934-39152007)
chr1 (1-74)||(45156052-45156125)
chr1 (1-74)||(50680335-50680407)
chr1 (29-77)||(7675512-7675559)
chr1 (1-77)||(11190385-11190461)
chr1 (29-77)||(15000008-15000056)
chr1 (1-77)||(43060031-43060107)
chr1 (1-77)||(44404442-44404518)
[»] scaffold0302 (2 HSPs)
scaffold0302 (1-77)||(17470-17546)
scaffold0302 (28-77)||(18828-18877)
[»] scaffold0294 (2 HSPs)
scaffold0294 (1-77)||(5463-5539)
scaffold0294 (1-77)||(4442-4518)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-76)||(4755-4829)
scaffold0059 (1-57)||(3695-3751)
[»] scaffold0019 (2 HSPs)
scaffold0019 (1-76)||(61484-61559)
scaffold0019 (29-77)||(60090-60138)
[»] scaffold0186 (2 HSPs)
scaffold0186 (20-77)||(23081-23136)
scaffold0186 (17-77)||(23931-23991)
[»] scaffold0045 (1 HSPs)
scaffold0045 (27-77)||(49135-49185)
[»] scaffold0320 (1 HSPs)
scaffold0320 (1-77)||(19488-19564)
[»] scaffold0227 (1 HSPs)
scaffold0227 (27-77)||(170-220)
[»] scaffold2034 (1 HSPs)
scaffold2034 (28-77)||(233-282)
[»] scaffold1303 (1 HSPs)
scaffold1303 (29-77)||(1439-1487)
[»] scaffold0632 (1 HSPs)
scaffold0632 (29-77)||(3361-3408)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-77)||(49458-49534)
[»] scaffold0093 (2 HSPs)
scaffold0093 (29-76)||(2518-2564)
scaffold0093 (29-76)||(7141-7187)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 52491632 - 52491708
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  52491632 aaaattgtagtttctgtatttagaggaccaaaattgcaagtttttgaaagttaagggtggaaaagtacactttagcc 52491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1290223 - 1290299
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  1290223 aaaattgtagtttttgtacttagagggccaaaattgcaagattttgaaagttaaggggggaaaagtgcactttagcc 1290299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49308052 - 49308127
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49308052 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagggg-ggaaaagtgcactttagcc 49308127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8758862 - 8758935
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  8758862 aaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcatttta 8758935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 25685009 - 25684934
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25685009 aaattgtggttttggtacttagagggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 25684934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19750600 - 19750673
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttag 75  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  19750600 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttagggg-ggaaaagtgcactttag 19750673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19789206 - 19789133
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttag 75  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  19789206 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttagggg-ggaaaagtgcactttag 19789133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 1835155 - 1835203
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1835155 caaaattgcaagtttttgaaagttagggatggaaaagtgcactttagcc 1835203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17388236 - 17388311
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  |  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17388236 aaaattgtagtttatgtacttaagggaccaaaattgcaagtttttgaaagttagggg-ggaaaagtgcactttagcc 17388311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 10471414 - 10471489
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  10471414 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10471489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 25685848 - 25685923
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  25685848 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 25685923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 10470603 - 10470546
Alignment:
Q  20 ttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  10470603 ttagagggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10470546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12129699 - 12129626
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| |||| |||  | ||||||||||||||||||||||||||| | | ||||||||||||||||    
T  12129699 aaaattgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtgcacttta 12129626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1963272 - 1963196
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  |||   ||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  1963272 aaaattgtagtttttgtacataggaggccaaaattgcaactttttgaaagttaaggggggaaaagtgcactttagcc 1963196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8757750 - 8757675
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||| |||| | || ||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  8757750 aaaattgtagtttctgtacttagggggctaaaattgtaagtttttgaaagttaaggg-gaaaaagtgcactttagcc 8757675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17383068 - 17382993
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  |  ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17383068 aaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttagggg-agaaaagtgcactttagcc 17382993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26421647 - 26421722
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| ||||   | |||||||||||||||||||||||||| || |||||||||||||||||||    
T  26421647 aaaattgtagtttttgtacttaggaggtcaaaattgcaagtttttgaaagttagagg-ggaaaagtgcactttagcc 26421722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31599865 - 31599789
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  31599865 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcacttcagcc 31599789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31601010 - 31601086
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||| |||||||| || | |||||||||||||||||    
T  31601010 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcactttagcc 31601086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 48780296 - 48780248
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  48780296 caaaattgcaagtttttaaaagttagggggggaaaagtgcactttagcc 48780248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 5526177 - 5526226
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  5526177 gccaaaattgcaagtttttgaaagttagagg-ggaaaagtgcactttagcc 5526226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 13386585 - 13386634
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtgg-aaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  13386585 caaaattgcaagtttttgaaagttagggggggaaaaagtgcactttagcc 13386634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 48781097 - 48781146
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||    
T  48781097 ccaaaattgcaaatttttgaaagttagagggggaaaagtgcactttagcc 48781146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1964466 - 1964542
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||   ||| | |||||||||| || ||||| ||||||| |||||||||||||||||||||||    
T  1964466 aaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcactttagcc 1964542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 13386090 - 13386014
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagttttt-gaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  13386090 aaattgtggttttggtacttagggggccaaaattgcaagttttttgaaagttagagggggaaaagtgcactttagcc 13386014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 49306850 - 49306775
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| ||| |  |||||||||||||||||||||||||| ||||   |||||||||||||||||    
T  49306850 aaaattgtagtttttgtacttaaatggccaaaattgcaagtttttgaaagtt-gggggaaaaaagtgcactttagcc 49306775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 3928909 - 3928959
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  3928909 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 3928959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 14868939 - 14868890
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  14868939 gccaaaattgcaagattttgaaagatagggg-ggaaaagtgcactttagcc 14868890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 14876995 - 14877044
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  14876995 gccaaaattgcaagattttgaaagatagggg-ggaaaagtgcactttagcc 14877044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 8155783 - 8155741
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  8155783 aaaattgcaagtttttgaaagttaggg--ggaaaagtgcacttta 8155741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35935558 - 35935631
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| |||| |||| | || |||||||||| ||||| ||||||| ||| || |||||||||||||    
T  35935558 aaaattgtagtttatgtacttagggggctaaaattgcaaatttttaaaagttaagggggggaaagtgcacttta 35935631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 1834167 - 1834119
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||||||| |||||||| || |||||||||||||||||||    
T  1834167 caaaattgtaagttttttaaagttagagggggaaaagtgcactttagcc 1834119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 5525407 - 5525360
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||    
T  5525407 caaaattgcaagtttttgaaagttagggg-ggaaaaatgtactttagcc 5525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 35934391 - 35934347
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||    
T  35934391 ccaaaattacaagtttttgaaagttaggg--ggaaaagtgcacttta 35934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 13509410 - 13509459
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||| ||||||||||| |||||||| ||||||||||    
T  13509410 gccaaaattgcaattttttaaaagttagggg-ggaaaagtacactttagcc 13509459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 55602451 - 55602379
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| | ||| |||||  | ||||||||||||||||||||||||  || |||||| |||||||||    
T  55602451 aaaattgtagtttttatatatagaggactaaaattgcaagtttttgaaagttaaagg-ggaaaaatgcacttta 55602379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10448285 - 10448361
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | || ||||| |||| ||||||||| ||||||| ||  |||||||||||||||    
T  10448285 aaaattgtagtttttgtacatagggggctaaaatcgcaactttttgaaacttaggggaggggaagtgcactttagcc 10448361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 21539122 - 21539162
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtg 67  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  21539122 gccaaaattgcaagtttttaaaaattaagggtggaaaagtg 21539162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 55603585 - 55603628
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  55603585 aaaattgcaagtttttgaaagttaaggg-gaaaaagtgcacttta 55603628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29931302 - 29931226
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29931302 aaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 29931226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29980456 - 29980380
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29980456 aaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 29980380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54539831 - 54539755
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| | |  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  54539831 aaaattgtagtttttgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcactttagcc 54539755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7267719 - 7267647
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  7267719 aaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcacttta 7267647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19984925 - 19984849
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  19984925 aaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttagggggggaaaagtgcactttagcc 19984849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22776837 - 22776913
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  22776837 aaaattgtagtttttgtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcactttagcc 22776913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29932724 - 29932799
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  29932724 aaaattgtagtttttgtacttaggg-gccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 29932799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29981878 - 29981953
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  29981878 aaaattgtagtttttgtacttaggg-gccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 29981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 535834 - 535883
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  535834 ccaaaattgcaagtttttgaaagttaggggtggaaaagtacactttagcc 535883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7268852 - 7268924
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||||| || ||||   ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7268852 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttgaaagttagggg-ggaaaagtgcacttta 7268924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12700249 - 12700175
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  12700249 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggg--gggaaagtgcactttagcc 12700175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7758478 - 7758402
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  7758478 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcc 7758402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 54540815 - 54540891
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  | | ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  54540815 aaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 54540891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 55192020 - 55192095
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  55192020 aaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaagttaaggggggaaaa-tacactttagcc 55192095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8456553 - 8456479
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||| ||||||||| |  |||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  8456553 aaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaaattagggg-gaaaaagtgcactttagc 8456479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 47615599 - 47615649
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  47615599 gccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 47615649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 52840655 - 52840705
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  52840655 gccaaaattgcaagtttttgaaagttaggggaggaaaagggcactttagcc 52840705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24516536 - 24516464
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttt 73  Q
    ||||||||||||| | || |||| | ||||||||||||||||||| ||||||||||| | |||||||||||||    
T  24516536 aaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 47609745 - 47609697
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  47609745 caaaattgcaagtttttgaaagttagggggggaaaagtgcattttagcc 47609697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 47610606 - 47610678
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||| ||||  ||| |||| | |||||||||||||||||||||||||||| || ||||||||||||||||    
T  47610606 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 47610678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 5001275 - 5001200
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  5001275 aaattgtggttttggtacttagggggccaaaattgcaagattttgaaagataggggaggaaaagtgcactttagcc 5001200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 51470047 - 51469972
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  51470047 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagcc 51469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 47614235 - 47614185
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| || | |||||||||||||||||    
T  47614235 gccaaaattgcaagtttttgaaagttagaggggaaaaagtgcactttagcc 47614185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 49216321 - 49216247
Alignment:
Q  3 aattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||| ||||  ||| | | ||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  49216321 aattgtagtttttgtacatagggggtcaaaattgcaactttttgaaacttaggcgtggaaaagtgcactttagcc 49216247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12703525 - 12703600
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||| ||| |||||||||||||| || | |||||||||||||||||    
T  12703525 aaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagg-gaaaaagtgcactttagcc 12703600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 51038843 - 51038891
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  51038843 caaaattgcaactttttaaaagttaagggtggaaaagtgcactttagcc 51038891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 53614895 - 53614819
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | ||| |||||  | ||||||| |||||||||||||||| ||| |||||| ||||||||||||    
T  53614895 aaaattgtagtttttatatatagaggactaaaattgtaagtttttgaaagttaagggaggaaaaatgcactttagcc 53614819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 11671371 - 11671441
Alignment:
Q  6 tgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| | ||||||| | || |||||||||||||||||||||||||| | | |||||||||||||||||    
T  11671371 tgtagtttttatatttagggggctaaaattgcaagtttttgaaagttaggcg-gaaaaagtgcactttagcc 11671441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 5029734 - 5029783
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  5029734 gccaaaattgcaagattttgaaagatagggg-ggaaaagtgcactttagcc 5029783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 19986123 - 19986173
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||||||||    
T  19986123 gccaaaattgcaagtttttgaaacttaagaggggaaaagtgcactttagcc 19986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 51470510 - 51470555
Alignment:
Q  31 aaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  51470510 aaattgcaagtttttgaaagttagggg-ggaagagtgcactttagcc 51470555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 534547 - 534499
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||| |||||| || | |||||||||||||||||    
T  534547 caaaattgcaagtttttgagagttagaggggaaaaagtgcactttagcc 534499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 51037611 - 51037536
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||   ||||| | ||||||||||| ||||||||||||| |||  ||||||||||||||||||    
T  51037611 aaaattgtagtttttgttcatagagggtcaaaattgcaactttttgaaagttaaggg-agaaaagtgcactttagcc 51037536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 6170320 - 6170281
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgc 68  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  6170320 caaaattgcaagtttttgaaagttatgggtgaaaaagtgc 6170281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 22775825 - 22775783
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcac 70  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  22775825 gccaaaattgcaactttttgaaagttagggg-ggaaaagtgcac 22775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 23769904 - 23769857
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||| || |||||||||| |||||||||||||||||| ||||    
T  23769904 aaaattgcaacttgttgaaagttaagggtggaaaagtgcacttcagcc 23769857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 28262242 - 28262193
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  28262242 gccaaaatcgcaacgttttgaaagttagggg-ggaaaagtgcactttagcc 28262193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 28263162 - 28263212
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||| ||||||||||| |||||||||||||||||||    
T  28263162 gccaaaatcgcaacgttttaaaagttagggggggaaaagtgcactttagcc 28263212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 52276354 - 52276304
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  ||||||||| |||||| |||||||||||||||||||    
T  52276354 gccaaaatcgcaacgttttgaaagatagggggggaaaagtgcactttagcc 52276304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 52281598 - 52281648
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  ||||||||| |||||| |||||||||||||||||||    
T  52281598 gccaaaatcgcaacgttttgaaagatagggggggaaaagtgcactttagcc 52281648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46720017 - 46719941
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | ||  ||| | |||||||| |||| ||||| ||||||| ||| |||||| ||||||||||||    
T  46720017 aaaattgtagtttttatacatagggggccaaaatcgcaactttttaaaagttaaggggggaaaaatgcactttagcc 46719941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46721245 - 46721321
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | |  ||||| |||| ||||| |||||||||||  ||||||||||||||||||    
T  46721245 aaaattgtagtttttgtacatagggggttaaaatcgcaactttttaaaagttagggggagaaaagtgcactttagcc 46721321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52839113 - 52839037
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  ||| |||||| | ||||||| ||| |||||| ||||||| || |||||| ||||||||||||    
T  52839113 aaaattgttgttttggtacttagagggtcaaaattacaaatttttggaagttagagggggaaaattgcactttagcc 52839037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18869000 - 18868924
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18869000 aaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttaggggtggaaaagtacactttagcc 18868924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7899907 - 7899983
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||| |||| |  |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7899907 aaaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 7899983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22848267 - 22848191
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| |  |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  22848267 aaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcc 22848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23869560 - 23869635
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  23869560 aaaattgtagtttttgtatttagggggccaaaattgcaagttttt-aaagttaagggtggaaaagtgcactttagcc 23869635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36449854 - 36449778
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  36449854 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 36449778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 11938840 - 11938889
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11938840 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 11938889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38840518 - 38840594
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | || |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  38840518 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 38840594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18299449 - 18299373
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | || ||||   |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  18299449 aaaattgtagtttttatacttaggtggccaaaattgaaagtttttgaaagttacgggtggaaaagtgcactttagcc 18299373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18904443 - 18904367
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  | |||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  18904443 aaaattgtagtttttgtacttaaggggccaaaattgcacgtttttgaaagttaaggggggaaaagtgcactttagcc 18904367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18906012 - 18906088
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | || |||||||||||||||||||||||||  | |||||||||||||||||||    
T  18906012 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcactttagcc 18906088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 36450947 - 36451018
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||||||| |||| |  |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  36450947 aaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcacttta 36451018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13568048 - 13567975
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||  | |||||||| |||||||    
T  13568048 aaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaacttagaaggggaaaagtacacttta 13567975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 18797295 - 18797246
Alignment:
Q  29 caaaattgcaagtttttgaaagtta-ggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18797295 caaaattgcaagtttttgaaagttagggggtggaaaagtgcactttagcc 18797246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11258836 - 11258912
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | |||||||||||||||||||||||||||| |  || ||| ||||||||||||    
T  11258836 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagagaggggaaaatgcactttagcc 11258912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41879237 - 41879313
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||| ||| ||| | ||||||| |||||||||    
T  41879237 aaaattgtagtttatgtacttagggggccaaaattgcaagtttttgaaaattaagggggaaaaagtgtactttagcc 41879313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 1034520 - 1034570
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  1034520 gccaaaattgcatgtttttgaaagttaaggggggaaaagtgcactttagcc 1034570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7898767 - 7898694
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||||| || ||||   || |||||||||||||||||||||||| |||  |||||||||||||||    
T  7898767 aaaattgtagtttctatacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcacttta 7898694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16446230 - 16446154
Alignment:
Q  1 aaaattgtagtttctgtattta-gagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||||||| ||| |  |||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  16446230 aaaattgtagtttttgtatttatgag-gttaaaattgcaagtttttgaaagttaagggtagaaaaatgcactttagcc 16446154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41878170 - 41878092
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgca---agtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||| |||| | ||||||||||||   ||||||||||||||| ||| || ||||||||||||||||    
T  41878170 aaaattgtagtttctgtacttagggggccaaaattgcaaatagtttttgaaagttaaggg-gggaaagtgcactttagcc 41878092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 802616 - 802691
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||   || | ||||||||||||||||||||||| ||||||| |||||||| ||||||||||    
T  802616 aaaattgtagtttttgtacacagggggccaaaattgcaagtttttgaaacttagggg-ggaaaagtacactttagcc 802691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13030365 - 13030293
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||| ||| |||| |||| | ||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  13030365 aaaattgtaatttttgtacttaggg-gccaaaattacaagtttttgaaagttaggg--ggaaaagtgcactttagc 13030293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18300749 - 18300822
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||| |||| |||| | | ||||||||||||||| ||||||||||||  ||||||||||| ||||||    
T  18300749 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttatgaaagttaggg--ggaaaagtgcaatttagc 18300822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22587979 - 22588054
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | ||||||||||||||||||||||||||| | | |||||| ||||||||||||    
T  22587979 aaaattgtagtttttgtacataggg-gccaaaattgcaagtttttgaaagttatgaggggaaaaatgcactttagcc 22588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38839318 - 38839242
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | || |||||||||||||||||||| ||| ||| | |||| ||||||||||||    
T  38839318 aaaattgtagtttttgtagttagggggctaaaattgcaagtttttgaaaattaagggggaaaaaatgcactttagcc 38839242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 11257669 - 11257622
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||    
T  11257669 aaaattgcaagtttttgaaagttagaggagtaaaagtgcactttagcc 11257622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 13570611 - 13570658
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  13570611 aaaattgcaagtttttgaaagttatgggtagaaaaatgcactttagcc 13570658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 21837306 - 21837354
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  21837306 gccaaaattgcaagtttttgaaagttaggg--gaaaaagtgcactttagcc 21837354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 1033260 - 1033212
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  1033260 gccaaaattgcaagtttttaaaagttagggg-ggaaaagtacactttagc 1033212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32739699 - 32739643
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||||||||| ||||  ||  | |||||||||||||||||||||||||||||||    
T  32739699 aaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagttagggg 32739643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 21837118 - 21837070
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| |  | |||||||||||||||||    
T  21837118 gccaaaattgcaagtttttgaaagttagag--gaaaaagtgcactttagcc 21837070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18869188 - 18869252
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattg-caagtttttgaaagttaggggtggaaaa 64  Q
    ||||||||||||| |||| |||||  |||||||||| ||| |||||||||||||| |||| ||||    
T  18869188 aaaattgtagtttttgtacttagaaggccaaaattgccaaatttttgaaagttagaggtgaaaaa 18869252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24475300 - 24475244
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||||||||| | || |||| | || |||||| |||||||||||||||||||||    
T  24475300 aaaattgtagtttttatacttagggggcaaaaattacaagtttttgaaagttagggg 24475244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11287852 - 11287779
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  11287852 aaaattgtagtttctgtacttagtgggccaaaattgcaagttttttaaagttaggggtgaaaaagtgcacttta 11287779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18979145 - 18979220
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||| | ||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  18979145 aaaattgtagtttttatatttagggggccaaaattgcaagttgttgaaagttagggggggaaaagtgcactttagc 18979220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10007788 - 10007864
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||||| || |||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  10007788 aaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10007864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 22221417 - 22221465
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22221417 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 22221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 22227759 - 22227807
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22227759 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 22227807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5514057 - 5513982
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | |||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  5514057 aaaattgtagtttttgtacttagggggccaaaattggaagtttttgaaagttagggg-gtaaaagtgcactttagcc 5513982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30335715 - 30335639
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||| ||| |||| |||| | ||||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  30335715 aaaattgtaatttttgtacttagcgagccaaaattgcaagtttttaaaagttaagggtggaaaaatgcactttagcc 30335639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45114541 - 45114617
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| |  |||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  45114541 aaaattgtagtttgtgtacatagtgaaccaaaattgcaagtttttgaaagttaggggcggaaaagtgcacttcagcc 45114617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 11288914 - 11288961
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  11288914 aaaattgcaagtttttgaaagttaggggtgaaaaagtgcactttagcc 11288961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 10006394 - 10006344
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10006394 gccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 10006344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32207350 - 32207424
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| ||| |||||||||||||||||||| |||||||  || ||||||||||||||||    
T  32207350 aaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggttaggg--gggaaagtgcactttagcc 32207424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12353386 - 12353460
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| |||||| |||| |||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  12353386 aaaattatagttt-tgtacttagggggccaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcactttagcc 12353460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 1823627 - 1823552
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||| |||| |||||| | ||||||||||||||||| ||||||| ||| | |||||| ||||||||||    
T  1823627 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcc 1823552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1824103 - 1824174
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 72  Q
    ||||||||||||| |||| |||| |  ||||||||||||||||||||||||||| || |||||| |||||||    
T  1824103 aaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaagttagagggggaaaaatgcactt 1824174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 1858072 - 1857997
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||| |||| |||||| | ||||||||||||||||| ||||||| ||| | |||||| ||||||||||    
T  1858072 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcc 1857997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1858548 - 1858619
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 72  Q
    ||||||||||||| |||| |||| |  ||||||||||||||||||||||||||| || |||||| |||||||    
T  1858548 aaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaagttagagggggaaaaatgcactt 1858619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 29968364 - 29968434
Alignment:
Q  3 aattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||| |||| |||| | ||||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  29968364 aattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaaggg-ggaaaagtgcacttta 29968434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 24483193 - 24483143
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  24483193 gccaaaattgcaagtttttgaaaattaggaggggaaaagtgcactttagcc 24483143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5514295 - 5514370
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||||  || |||||||||||||||| ||| |||||||   |||||||||||||||||    
T  5514295 aaaattgtagtttttgtatttagaaggctaaaattgcaagttttttaaaattagggg-ataaaagtgcactttagcc 5514370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12351997 - 12351921
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||| ||||||||||||| ||| || ||| ||||||||||||    
T  12351997 aaaattgtagtttttgtacttagggggtcaaaattgcaaatttttgaaagttaagggggggaaaatgcactttagcc 12351921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18970986 - 18970920
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgc 68  Q
    ||||||||||||| |||| |||| | |||||||||| ||| |||||||||||||||| ||||||||||    
T  18970986 aaaattgtagtttttgtacttagggggccaaaattgaaagattttgaaagttagggg-ggaaaagtgc 18970920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18978095 - 18978029
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgc 68  Q
    ||||||||||||| |||| |||| | |||||||||| ||| |||||||||||||||| ||||||||||    
T  18978095 aaaattgtagtttttgtacttagggggccaaaattgaaagattttgaaagttagggg-ggaaaagtgc 18978029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 43661877 - 43661924
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  43661877 aaaattgcaactttttgaaagttaagggtggaaaagtgcacttcagcc 43661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 11456688 - 11456638
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| |||||||  ||||||||||||||||||    
T  11456688 gccaaaattgcaaatttttgaaaattagggggagaaaagtgcactttagcc 11456638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 32968506 - 32968456
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  32968506 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 32968456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 36249602 - 36249552
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  36249602 gccaaaattgcaactttttgaaacttaaggggggaaaagtgcactttagcc 36249552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 38974845 - 38974795
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  38974845 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 38974795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 38980095 - 38980145
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  38980095 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 38980145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 39005943 - 39005893
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  39005943 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 39005893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 39011192 - 39011242
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  39011192 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 39011242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 22220436 - 22220388
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||| |||||||| || |||||||||||||||||||    
T  22220436 caaaattgcaagtattttaaagttagagggggaaaagtgcactttagcc 22220388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24122958 - 24122883
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| |||||| |||| |||| | | ||||||||||| ||||| ||||||||||| |||||| ||||||||||||    
T  24122958 aaaattatagtttttgtacttagggggtcaaaattgcaaattttttaaagttagggg-ggaaaaatgcactttagcc 24122883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 24488720 - 24488760
Alignment:
Q  17 tatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  24488720 tatttagggggccaaaattgcaagtttttgaaagttagggg 24488760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30336526 - 30336602
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| ||||   || ||||||  |||||||||||||||||||| | | |||||||||||||||    
T  30336526 aaaattgtagtttttgtacttaggaggctaaaattataagtttttgaaagttaggggggaagaagtgcactttagcc 30336602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 32973987 - 32974037
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| | |||||||||||||||||    
T  32973987 gccaaaatcgcaacgttttgaaagttaggggggaaaaagtgcactttagcc 32974037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11282084 - 11282011
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||  ||| ||||| ||| | ||||||||||||| ||||| ||||||| ||| | ||||||||||||||    
T  11282084 aaaattgtcatttttgtatatagggggccaaaattgcaactttttaaaagttaagggggaaaaagtgcacttta 11282011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40471172 - 40471244
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||||||  |  ||||||||| |||||||| |||||||  || ||||||||||||||||    
T  40471172 aaaattgtagtttttgtatttatgga-ccaaaattgtaagttttttaaagttaaagggggaaaagtgcacttta 40471244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 23170052 - 23170098
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  23170052 caaaattgcaagtttttgaaaattagggg-ggaaaa-tgcactttagcc 23170098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42982682 - 42982758
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||| |  || | ||||||||| ||| ||||| ||| |||  ||||||||||||||||||||||    
T  42982682 aaaattgtagtttttgtttacagggggccaaaattacaactttttaaaacttaaaggtggaaaagtgcactttagcc 42982758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19752987 - 19752912
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19752987 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagggg-ggaaaagtgcactttagcc 19752912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1796130 - 1796054
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| ||||   |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  1796130 aaaattgtagtttttgtacttaggtggccaaagttgcaagtttttgaaagttaggggtggaaaaatgcactttagcc 1796054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22940647 - 22940723
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||| ||| |||| |||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  22940647 aaaattgtaatttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 22940723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25523145 - 25523069
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | || |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  25523145 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 25523069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28538752 - 28538676
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28538752 aaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagtgcactttagcc 28538676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19754155 - 19754232
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtg-gaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |  |||| ||||||||||||    
T  19754155 aaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttaggggggaaaaaaatgcactttagcc 19754232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16650880 - 16650956
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | || |||| | | ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  16650880 aaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcactttagcc 16650956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18486927 - 18487003
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||||| || |||| | ||||||||||||||||||||||||||| ||| || ||||||||||||||||    
T  18486927 aaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaagggggggaaagtgcactttagcc 18487003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20214271 - 20214196
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  20214271 aaaattgtagtttttgtacatagagtgctaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcactttagcc 20214196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 25056434 - 25056482
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25056434 caaaattgcaagtttttgaaagttaggagtggaaaagtgcactttagcc 25056482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33160311 - 33160387
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||| || |||| | || |||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  33160311 aaaattgtagtttctatacttagggggctaaaattgcaagtttttgaaaattaaggggggaaaagtgcactttagcc 33160387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40255697 - 40255773
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||| ||| | | |||||||||||||||||||    
T  40255697 aaaattgtagtttctgtatttagggggtcaaaattgcaagtttttaaaaattaagaggggaaaagtgcactttagcc 40255773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20216788 - 20216861
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||| ||| | || |||||||||||||||||||| ||| ||| ||||||||||||||||    
T  20216788 aaaattgtagtttttgtatatagggagctaaaattgcaagtttttgaaaattaaggggggaaaagtgcacttta 20216861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28539845 - 28539917
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| |||| |||||| | ||||||||||||||||| ||||||||||| |||||| |||||||||    
T  28539845 aaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttagggg-ggaaaaatgcacttta 28539917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33158174 - 33158098
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | |||||||||||||||||||||||||||||   |||| ||||||||||||    
T  33158174 aaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggggaaaaaaatgcactttagcc 33158098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36486513 - 36486589
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  36486513 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcacttcagcc 36486589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 5730492 - 5730441
Alignment:
Q  27 gccaaaattgcaagtttttgaaagtt-aggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  5730492 gccaaaattgcaagtttttgaaagttaagggggggaaaagtgcactttagcc 5730441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 5778890 - 5778937
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  5778890 aaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 5778937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 18485188 - 18485138
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||| |||||||| || | |||||||||||||||||    
T  18485188 gccaaaattgcaagttttttaaagttagaggggaaaaagtgcactttagcc 18485138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 36485348 - 36485302
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttag 75  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  36485348 caaaattgtaagttttttaaagttaggggtggaaaaatgcactttag 36485302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 5777947 - 5777901
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||  || ||||||||||||||||    
T  5777947 caaaattgcaagtttttgaaagttaggg--gggaaagtgcactttagcc 5777901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24332989 - 24332916
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||  ||  | ||||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  24332989 aaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcacttta 24332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25524152 - 25524229
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagtta-ggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||| ||| ||||| ||| ||| |||| |||||||||||||||||||    
T  25524152 aaaattgtagtttttgtacttagggggccaaaattacaaatttttaaaaattaggggggggaaaagtgcactttagcc 25524229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 34893739 - 34893686
Alignment:
Q  3 aattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggg 56  Q
    ||||||||||| ||||  ||| | ||||||||||||||||||||||||||||||    
T  34893739 aattgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggg 34893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 31576542 - 31576493
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||  |||||||| |||||||| |||||||||| |||||||    
T  31576542 ccaaaattgcaacattttgaaacttaggggtcgaaaagtgcagtttagcc 31576493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7311666 - 7311610
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||||||||| |||| || |   ||||| |||||||||||||||||||||||||    
T  7311666 aaaattgtagtttttgtacttgggaggccaatattgcaagtttttgaaagttagggg 7311610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18154569 - 18154494
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | |||||||| |||||||||||||||| |||   |||||| ||||||||||    
T  18154569 aaaattgtagtttttgtacttaggg-gtcaaaattgtaagtttttgaaagttaaggggaaaaaagttcactttagcc 18154494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42196225 - 42196301
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||| |||||||| ||||  ||||| |||||| |  ||| ||||| ||||||||||| || ||||||||||||||||    
T  42196225 aaaaatgtagtttttgtacatagagggccaaattcacaactttttaaaagttaggggggggaaagtgcactttagcc 42196301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18371500 - 18371424
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  | ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  18371500 aaaattgtagtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagcc 18371424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 20163585 - 20163657
Alignment:
Q  5 ttgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||| ||||  ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20163585 ttgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggggtggagaagtgcactttagcc 20163657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22630477 - 22630553
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  22630477 aaaattgtagtttttgtaattagggggccaaaattgcaagtttttgaaagttatggagggaaaagtgcactttagcc 22630553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48934928 - 48935004
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| |||||| |||| |||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  48934928 aaaattttagtttttgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaaatgcactttagcc 48935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 3227620 - 3227695
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3227620 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 3227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 31949828 - 31949903
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  |||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  31949828 aaattgtggttttggtatttagggggccaaaattgcaagtttttgaaagttagggggggaagagtgcactttagcc 31949903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 17782579 - 17782654
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  17782579 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 17782654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 7501903 - 7501953
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  7501903 gccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 7501953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 17781709 - 17781663
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttag 75  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17781709 caaaattgcaagtttttgaaagttagggggggaaaagtgcactttag 17781663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 127385 - 127337
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  127385 ccaaaattgcaagtttttgaaagttagggg-ggaaaagtgcactttagcc 127337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31659699 - 31659622
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtgg-aaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | |||||||| |||||||||||||||||||| || |||||||||||||||||    
T  31659699 aaaattgtagtttttgtacttagggggtcaaaattgtaagtttttgaaagttagggggggtaaaagtgcactttagcc 31659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42886311 - 42886384
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||||||| | | ||||||||||| ||||||||||||||| |  |||||||||||||||    
T  42886311 aaaattgtagtttttgtatttagggggtcaaaattgcaaatttttgaaagttaggaggagaaaagtgcacttta 42886384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7500530 - 7500455
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||||| || ||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7500530 aaaattgtggtttctatacttagaggatcaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcactttagcc 7500455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 31949397 - 31949322
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  31949397 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagcc 31949322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 47525421 - 47525468
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  47525421 aaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 47525468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11662576 - 11662649
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||| |||||| ||||  ||||| || |||||||||||||||||||||||| ||| |||||| |||||||||    
T  11662576 aaaattatagtttttgtacatagagagctaaaattgcaagtttttgaaagttaaggggggaaaaatgcacttta 11662649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21505490 - 21505416
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||| | | | |||||||| |||| ||||||||||||||||  |||||||||||||||||||    
T  21505490 aaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaaagttaggg--ggaaaagtgcactttagcc 21505416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11658455 - 11658379
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | || ||||||||| |||||||||||||| ||| ||||||||||| |||||||    
T  11658455 aaaattgtagtttttgtacatagggggctaaaattgcatgtttttgaaagttaaggggggaaaagtgcaatttagcc 11658379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18372482 - 18372538
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||| |||||||    
T  18372482 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaaattagggg 18372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34351568 - 34351512
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||||||||||| || || ||| ||||||||||||||||||||||||| |||||    
T  34351568 aaaattgtagtttctatacttggagagccaaaattgcaagtttttgaaagtcagggg 34351512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14999180 - 14999249
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 72  Q
    ||||||||||||| ||||||||| | | |||||||||||| |||||||| ||||||| ||||||||||||||    
T  14999180 aaaattgtagtttttgtatttagggggtcaaaattgcaag-ttttgaaaattagggg-ggaaaagtgcactt 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 47524575 - 47524532
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcac 70  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  47524575 gccaaaattgcaagtttttgaaagttagagggggaaaagtgcac 47524532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 3227182 - 3227109
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  3227182 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaaattagggg-gggaaagtgcactttagc 3227109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 34174034 - 34174083
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  34174034 gccaaaattgcaagattttgaaagatagggg-ggaaaagtgcactttagcc 34174083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 769461 - 769413
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||| |||  ||||||||| ||||||||||||    
T  769461 caaaattgcaagtttttgaaaattacaggtggaaaattgcactttagcc 769413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 47369828 - 47369781
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||   ||||||||| |||||||    
T  47369828 aaaattgcaagtttttgaaagttaggggaaaaaaagtgcattttagcc 47369781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 128654 - 128699
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||| ||||||||||||| ||  ||||||||||||||||    
T  128654 caaaattgcaaatttttgaaagttatggtgggaaaagtgcacttta 128699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 34352838 - 34352887
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| | |||||||||||| |||| |||| |||||||||||||||||    
T  34352838 ccaaaatagaaagtttttgaaaattagaggtgaaaaagtgcactttagcc 34352887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 597309 - 597364
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||||||||| |||| |||  ||| ||||||| |||||||||||||||||||||    
T  597309 aaaattgtagtttttgtacttat-gcgtcaaaatttcaagtttttgaaagttagggg 597364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 31661062 - 31661110
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||| |||||||||||||| |  || ||||||||||||||||    
T  31661062 caaaattgcaaatttttgaaagttagagaggggaaagtgcactttagcc 31661110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 32253451 - 32253499
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||| |||||| || ||| ||||||||||||| |||||||||    
T  32253451 caaaattgcaactttttgcaacttaagggtggaaaagtgtactttagcc 32253499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7316319 - 7316395
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||||  ||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7316319 aaaattgtggtttcaatatttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 7316395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16704522 - 16704598
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  16704522 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggaggaaaagtgcactttagcc 16704598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 3722533 - 3722608
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  3722533 aaattgtggttttggtacttagagggtcaaaattgcaagtttttgaaagttagggagggaaaagtgcactttagcc 3722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 8659340 - 8659265
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  8659340 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 8659265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 8821948 - 8821873
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  ||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  8821948 aaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 8821873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 7314930 - 7314880
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  7314930 gccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 7314880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 3721660 - 3721612
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  3721660 caaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 3721612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 8660256 - 8660304
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  8660256 caaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagcc 8660304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 26574690 - 26574619
Alignment:
Q  6 tgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||| ||||||   |||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  26574690 tgtagtttttgtacttagaggttcaaaattgcaagtttttgaaagttagaggtgggaaattgcactttagcc 26574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 34834632 - 34834677
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  34834632 caaaattgcaagtttttgaaagttagggagggaaaagtgcacttta 34834677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6842308 - 6842384
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| || |  ||| | ||||||||||||| ||||||||| |||| || |||||||||||||||||||    
T  6842308 aaaattgtagtttttgcacatagggggccaaaattgcaactttttgaaacttagagggggaaaagtgcactttagcc 6842384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14822436 - 14822360
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||| || |||  | ||||||||||||||||||||||| ||| |||  |||||||||||| |||||    
T  14822436 aaaattgtagtttctatacttatggggccaaaattgcaagtttttgaaaattaaggggtgaaaagtgcactctagcc 14822360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27322093 - 27322168
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  ||| |||| | |||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  27322093 aaaattgtggttttggtacttagggggccaaaattgcaagattttgaaagatagggg-ggaaaagtgcactttagcc 27322168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1829628 - 1829701
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| | || |||| | | ||||||||||||||||| |||||||||||   ||||||||||||||    
T  1829628 aaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttagggggaaaaaagtgcacttta 1829701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 16703616 - 16703570
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||    
T  16703616 caaaattgcaagtttttgaaagataggg--ggaaaagtgcactttagcc 16703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 8822846 - 8822894
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||  |  |||||||||||||||||||    
T  8822846 caaaattgcaagtttttgaaagttaaagagggaaaagtgcactttagcc 8822894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27437904 - 27437828
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | | | ||| | ||||||||||||| ||||| ||||||| |||  ||||||||||||||||||    
T  27437904 aaaattgtagtttttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagcc 27437828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 26717137 - 26717183
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttag 75  Q
    ||||||||||||||| ||||| ||| ||| |||||||||||||||||    
T  26717137 caaaattgcaagtttctgaaacttaaggggggaaaagtgcactttag 26717183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10784669 - 10784592
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagtt-aggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | || |||| | |  |||||||||||||||| |||||| ||||  |||||||||||||||||||    
T  10784669 aaaattgtagtttttatacttagggggttaaaattgcaagtttttaaaagttaagggagggaaaagtgcactttagcc 10784592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14823600 - 14823677
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagtt-aggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||| |||  | || |||||||||||||||| ||| || |||||   |||||||||||||||||    
T  14823600 aaaattgtagtttctgtacttaaggggctaaaattgcaagttttttaaaattaagggggaaaaaagtgcactttagcc 14823677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17496873 - 17496817
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    ||||||| ||||| |||| |||||| |  ||||||| ||||||||||||||||||||    
T  17496873 aaaattgcagtttttgtacttagagggttaaaattgtaagtttttgaaagttagggg 17496817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 35594265 - 35594217
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594265 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 35594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39699792 - 39699867
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||| |||| | | |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  39699792 aaaattgtagtttctgtacttagggggtcaaaattgcaagttattgaaagttagggg-ggaaaagtgcactttagcc 39699867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52275044 - 52274968
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  52275044 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcc 52274968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24426100 - 24426173
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| |||| |||| | |||||||||||||||||||||||||||| || || |||||||||||||    
T  24426100 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagaggggggaaagtgcacttta 24426173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37526902 - 37526975
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  37526902 aaaattgtggtttctatatttagggagccaaaattgcaagtttttgaaagttaaggggggaaaagtacacttta 37526975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14999360 - 14999285
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  14999360 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttagggg-ggaaaagtacactttagcc 14999285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23980491 - 23980567
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| |||||| |||| |||| | ||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23980491 aaaattatagtttttgtacttagggagccaaaattgcaagttttttaaagttagagggggaaaagtgcactttagcc 23980567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24422876 - 24422800
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  24422876 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcactttagcc 24422800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36613929 - 36614005
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||| ||||||||| ||||||||||| |||||| ||||||||||||    
T  36613929 aaaattgtagtttttgtacttagggggccaaaattacaagtttttaaaagttaggggaggaaaaatgcactttagcc 36614005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 51685790 - 51685866
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||||| |||||||| |||| |||||||||||||| || |||||||||||||||||||    
T  51685790 aaaattgtagtttttgtacatagagggccaaaatcgcaactttttgaaagttagagggggaaaagtgcactttagcc 51685866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 52827395 - 52827347
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52827395 caaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 52827347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 41364903 - 41364829
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||  |||||||| | |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  41364903 aaattgtggttttggtatttagggggccaaaattgcaagtttttgaaagttagggg-agaaaagtgcactttagcc 41364829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45149996 - 45150068
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||||| |||| |||| |||  | ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45149996 aaaattgttgtttttgtacttaaggggccaaaattgcaagtttttgaaagttagggg-ggaaaagtgcacttta 45150068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 50681632 - 50681705
Alignment:
Q  4 attgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||| | || |||||| ||||||||||||||||||||||| ||| | | |||||||||||||||||||    
T  50681632 attgtagtttttatagttagagagccaaaattgcaagtttttgaaaattaagaggggaaaagtgcactttagcc 50681705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7674602 - 7674528
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| || |||||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  7674602 aaaattgtagtttttgtacttagggc-ccaaaattgcaagtttttaaaagttagggg-ggaaaagggcactttagcc 7674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11436118 - 11436042
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | || ||| |  |||||||||||||||||||||||||||  || |||||||||||||||||||    
T  11436118 aaaattgtagtttttatacttaaaaggccaaaattgcaagtttttgaaagttaaagggggaaaagtgcactttagcc 11436042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11437224 - 11437300
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  |  |||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  11437224 aaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcc 11437300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33088642 - 33088718
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| ||| || | |||||||||||||||||||| ||||| |  |||||||||||||||||||    
T  33088642 aaaattgtagtttttgtacttaaagggtcaaaattgcaagtttttgaatgttagagagggaaaagtgcactttagcc 33088718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39698639 - 39698563
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| ||||||||||| |||| | |||||||||| |||||||| ||||||| ||| || ||||||||||||||||    
T  39698639 aaaattatagtttctgtacttagggggccaaaattgaaagtttttaaaagttaaggggggtaaagtgcactttagcc 39698563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45157234 - 45157309
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| ||||  ||| | ||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45157234 aaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttagggg-gggaaagtgcactttagcc 45157309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36612928 - 36612853
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| ||| ||  |||||||||||| ||||||||||||| ||| |||||| ||||||||||||    
T  36612928 aaaattgtagtttttgtactta-agatccaaaattgcaaatttttgaaagttaaggggggaaaaatgcactttagcc 36612853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45148656 - 45148581
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | || |||| | ||||||||||||||||||||||||||| | | | |||||||||||||||||    
T  45148656 aaaattgtagttttt-tacttagggggccaaaattgcaagtttttgaaagttaagcgggaaaaagtgcactttagcc 45148581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 51684442 - 51684366
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | ||  ||| | ||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  51684442 aaaattgtagtttttatacatagggggccaaaattgcaactttttaaaagttaaggggggaaaagtgcactttagcc 51684366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 52828096 - 52828168
Alignment:
Q  2 aaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||| ||||  ||| |||| | ||||||||||||||||||||||| |||| || ||||||||||||||||    
T  52828096 aaattgtggttttggtacttagggagccaaaattgcaagtttttgaaaattagagggggaaaagtgcacttta 52828168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 41366184 - 41366231
Alignment:
Q  30 aaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||||    
T  41366184 aaaattgcatgtttttgaaagttaggaggggaaaagtgcactttagcc 41366231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 39222501 - 39222575
Alignment:
Q  4 attgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagtt-aggggtggaaaagtgcactttagcc 77  Q
    |||||||||| | || |||| | |||||||||||||||||||||||||| | ||| | |||||||||||||||||    
T  39222501 attgtagtttttatacttagggggccaaaattgcaagtttttgaaagttaaagggggtaaaagtgcactttagcc 39222575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39153141 - 39153214
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||  ||  | ||||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  39153141 aaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcacttta 39153214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43058861 - 43058789
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| |||| |||| | | ||||||||||||||||| ||||||||||| | ||||||| ||||||    
T  43058861 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttcaaagttagggg-gaaaaagtgtacttta 43058789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35067027 - 35067103
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||   ||| | |||||||| |||| ||||||||| ||| ||| |||||||||||||||||||    
T  35067027 aaaattgtagtttttgttcatagggggccaaaatcgcaactttttgaaacttaaggggggaaaagtgcactttagcc 35067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 39221405 - 39221358
Alignment:
Q  31 aaattgcaagtttttgaaagttag-gggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  39221405 aaattgcaagtttttgaaagttagaggggggaaaagtgcaatttagcc 39221358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39152007 - 39151934
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||  ||| | ||||||||| ||||||||||||| ||| ||| | |||| |||||||||    
T  39152007 aaaattgtagtttttgtacatagggggccaaaattacaagtttttgaaacttaagggggaaaaaatgcacttta 39151934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 45156125 - 45156052
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    ||||||||||||| ||||  ||||  | |||||||| |||||||||||| ||| ||| ||||||||| ||||||    
T  45156125 aaaattgtagtttttgtacatagaaggtcaaaattgtaagtttttgaaacttaagggaggaaaagtgaacttta 45156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 50680407 - 50680335
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 74  Q
    |||||| |||||| | || |||| | |||||||||||||||||||| |||||| ||| |||||| |||||||||    
T  50680407 aaaattatagtttttatacttagggggccaaaattgcaagtttttggaagttaaggg-ggaaaaatgcacttta 50680335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 7675512 - 7675559
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||    
T  7675512 caaaattgcaagtttttgaaagttaaaggtgg-aaagtacactttagcc 7675559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11190461 - 11190385
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| ||||| ||||| ||| |  |||||||||||| ||||| ||| ||| |||  ||||||||||||||||||    
T  11190461 aaaattgcagtttttgtatatagggaaccaaaattgcaactttttaaaatttaaggggtgaaaagtgcactttagcc 11190385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 15000008 - 15000056
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||| ||||||||||  | ||||||| |||||||||    
T  15000008 caaaattgcaagtttttaaaagttagggaggaaaaagtgaactttagcc 15000056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 43060031 - 43060107
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  | | ||||||| ||| |||||||||||||| || || ||||| ||||||||||    
T  43060031 aaaattgtagtttttgtacttaaggggtcaaaatttcaaatttttgaaagttagagggggtaaagtacactttagcc 43060107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44404518 - 44404442
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| |||||| |||| |||| | || |||||||| ||||||||||||||| | | | ||||||||| |||||||    
T  44404518 aaaattatagtttttgtacttagggggctaaaattgctagtttttgaaagttatgagggaaaaagtgcattttagcc 44404442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17546 - 17470
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||| ||||||| ||| | |||||||||||||||||    
T  17546 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcactttagcc 17470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 18828 - 18877
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||| ||||| ||||||||| | | |||||||||||||||||    
T  18828 ccaaaattgcaaatttttaaaagttaggagggaaaaagtgcactttagcc 18877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5463 - 5539
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| |||| |||  | | ||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  5463 aaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaaattagggggggaaaagtgcactttagcc 5539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4518 - 4442
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||| ||| |||| |||  | || ||||||| |||||||||||| ||||||| | ||| |||||||||||||    
T  4518 aaaattgtaatttttgtacttaaggggctaaaattgtaagtttttgaaaattaggggggaaaatgtgcactttagcc 4442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4755 - 4829
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||||||||||||| | |||||||||||| |||||| ||||||| ||| || |||||||||||||||    
T  4755 aaaattgtagtttctgtatttagggggccaaaattgcatgtttttaaaagtta-gggagggaaagtgcactttagc 4829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3751 - 3695
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttagggg 57  Q
    |||||| |||||||| || | || | |||||||||||||||||||||||||||||||    
T  3751 aaaattatagtttctttactcagggggccaaaattgcaagtttttgaaagttagggg 3695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 61484 - 61559
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagc 76  Q
    |||||| |||||| |||| |||| | || |||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  61484 aaaattatagtttttgtacttagggggctaaaattgcaagtttttgaaaattaagggaggaaaagtgcactttagc 61559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 60138 - 60090
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||    
T  60138 caaaattgcaagtttttaaaagttagaggaggaaaagtgcactttagcc 60090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 23136 - 23081
Alignment:
Q  20 ttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  23136 ttagagggacaaaattgcaagtttttgaaagttaggg--ggaaaagtgcactttagcc 23081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 23931 - 23991
Alignment:
Q  17 tatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||| | ||||||||||||||||||||||||||||||    |||||||||||||||||    
T  23931 tatttagggagccaaaattgcaagtttttgaaagttagggagaaaaaagtgcactttagcc 23991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 49135 - 49185
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  49135 gccaaaattgcaagtttttaaaagttaagggtggaaaagtgcaatttagcc 49185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19564 - 19488
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | || |||| | |||||||||||||| |||||||| ||| ||| |||||| ||||||||||||    
T  19564 aaaattgtagtttttatacttagggggccaaaattgcaaggttttgaaaattaaggggggaaaaatgcactttagcc 19488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 170 - 220
Alignment:
Q  27 gccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  170 gccaaaatcgcaacgttttgaaagttagggggggaaaagtgcactttagcc 220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 282 - 233
Alignment:
Q  28 ccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||||||| ||||||||||||| ||| || ||||||||||||||||    
T  282 ccaaaattgcaactttttgaaagttaagggggggaaagtgcactttagcc 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 1487 - 1439
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||||||    
T  1487 caaaattgcaagttttttaaagttagagggggaaaagtacactttagcc 1439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 3361 - 3408
Alignment:
Q  29 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  3361 caaaattgtaagtttttgaaagtaagggg-ggaaaagtgcactttagcc 3408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49458 - 49534
Alignment:
Q  1 aaaattgtagtttctgtatttagagcgccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 77  Q
    ||||||||||||| | | | ||| | ||||||||||||| ||||| ||||||| |||  ||||||||||||||||||    
T  49458 aaaattgtagtttttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagcc 49534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 2518 - 2564
Alignment:
Q  29 caaaattgcaagttttt-gaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  2518 caaaattgcaagttttttgaaagttagggg--gaaaagtgcactttagc 2564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 7141 - 7187
Alignment:
Q  29 caaaattgcaagttttt-gaaagttaggggtggaaaagtgcactttagc 76  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  7141 caaaattgcaagttttttgaaagttagggg--gaaaagtgcactttagc 7187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2965 times since January 2019
Visitors: 4805