View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_68 (Length: 251)

Name: NF0760_low_68
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_68
NF0760_low_68
[»] chr6 (1 HSPs)
chr6 (1-218)||(11073152-11073368)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11073368 - 11073152
Alignment:
Q  1 ttagtgttgaaaatatgatgaatgacnnnnnnn-taaattgattctaacattatagtggaaaagttgttgttctaaatagtccaatatcttcttcctcgt 99  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  11073368 ttagtgttgaaaatatgatgaatgacaaaaaaaataaattgattctaacattatagtggaaaagttgttgttccaaatagtccaattacttcttcctcgt 11073269  T
Q  100 aactaagtcacaattccattctttcattcaagatatagacctcttatgtttaaatattaattctaatattaatattatcggat--tatatatttttgtct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||     ||||||||||||||||||||  |||||||||||||||    
T  11073268 aactaagtcacaattccattctttcattcaagatatagacctcttacttttaaatattt----taatattaatattatcggataatatatatttttgtct 11073173  T
Q  198 ctaaaactaaaaccatctaaa 218  Q
    ||||||||||| |||||||||    
T  11073172 ctaaaactaaagccatctaaa 11073152  T

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