View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_69 (Length: 251)

Name: NF0760_low_69
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_69
NF0760_low_69
[»] chr4 (8 HSPs)
chr4 (21-244)||(26646911-26647134)
chr4 (36-152)||(13682689-13682805)
chr4 (64-152)||(13669832-13669920)
chr4 (36-196)||(13689216-13689373)
chr4 (36-141)||(22188262-22188367)
chr4 (118-196)||(13687264-13687342)
chr4 (170-212)||(13669772-13669814)
chr4 (170-212)||(13682629-13682671)
[»] chr8 (2 HSPs)
chr8 (64-240)||(37001797-37001973)
chr8 (64-212)||(36992080-36992228)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 26646911 - 26647134
Alignment:
Q  21 acatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataata 120  Q
    ||||||||||||| |||||||||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26646911 acatcatcatcaaccaccaactcaaaacaatctttctcaattatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgcataata 26647010  T
Q  121 tctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttcatgcaccaaggcttccttaattacatcttccttttcccaaatcattatgttcgt 220  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26647011 tctccattagcaaaggagatgtcacaacaccatctataaaaaattcatgcaccaaggcttccttaattacatcttccttttcccgaatcattatgttcgt 26647110  T
Q  221 tgaacttttgccactttctttcat 244  Q
    ||||||||||||||||||||||||    
T  26647111 tgaacttttgccactttctttcat 26647134  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 13682805 - 13682689
Alignment:
Q  36 accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag 135  Q
    ||||||||||||| || |||||  | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| |||||||||||||    
T  13682805 accaactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaag 13682706  T
Q  136 gagatgtcacaacacca 152  Q
    |||||||||||||||||    
T  13682705 gagatgtcacaacacca 13682689  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 13669920 - 13669832
Alignment:
Q  64 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacacca 152  Q
    ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13669920 tgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacacca 13669832  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 13689373 - 13689216
Alignment:
Q  36 accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag 135  Q
    ||||||||||||| || |||||  | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| |||||   | |||||||||||||    
T  13689373 accaactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtata---tgtccattagcaaag 13689277  T
Q  136 gagatgtcacaacaccatctnnnnnnnnttcatgcaccaaggcttccttaattacatcttc 196  Q
    ||||||||||||||||||||         |  | |||||||||||||||||||||||||||    
T  13689276 gagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc 13689216  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 22188262 - 22188367
Alignment:
Q  36 accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag 135  Q
    |||||| |||||| || ||||| || | | |||| ||||  ||||||||||||||| |||||||||| |||||||| ||||||||| ||||||| |||||    
T  22188262 accaacccaaacctattttcctcaattctaacaaccttagacgtagtattgttagcatttattgattgataaccattgtataatatgtccattatcaaag 22188361  T
Q  136 gagatg 141  Q
    ||||||    
T  22188362 gagatg 22188367  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 13687342 - 13687264
Alignment:
Q  118 atatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttcatgcaccaaggcttccttaattacatcttc 196  Q
    |||| |||||||||||||||||||||||||||||||||         |  | |||||||||||||||||||||||||||    
T  13687342 atatgtccattagcaaaggagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc 13687264  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 13669814 - 13669772
Alignment:
Q  170 caccaaggcttccttaattacatcttccttttcccaaatcatt 212  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  13669814 caccaaggcttccttaattacatcttcttcttcccaaaacatt 13669772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 13682671 - 13682629
Alignment:
Q  170 caccaaggcttccttaattacatcttccttttcccaaatcatt 212  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  13682671 caccaaggcttccttaattacatcttcttcttcccaaaacatt 13682629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 37001797 - 37001973
Alignment:
Q  64 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn 163  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||            
T  37001797 tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaa 37001896  T
Q  164 ttcatgcaccaaggcttccttaattacatcttccttttcccaaatcattatgttcgttgaacttttgccactttctt 240  Q
     |  | ||||||||||||| ||||||||||||  |||||||||| ||||  || | ||||| ||| |||||||||||    
T  37001897 gtgcttcaccaaggcttccataattacatcttgtttttcccaaaacatttggtcctttgaaatttggccactttctt 37001973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 36992080 - 36992228
Alignment:
Q  64 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn 163  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||            
T  36992080 tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaa 36992179  T
Q  164 ttcatgcaccaaggcttccttaattacatcttccttttcccaaatcatt 212  Q
     |  | ||||||||||||| ||||||||||||  |||||||||| ||||    
T  36992180 gtgcttcaccaaggcttccataattacatcttgtttttcccaaaacatt 36992228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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