View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_7 (Length: 560)
Name: NF0760_low_7
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Original strand, 17410410 - 17410942
Alignment:
| Q |
19 |
aacctgtgcaaggactgtgattgcaggacacttgatcataggtatggtttacattccgtatattcaatgccctttttggaattttatttagcaggcagtg |
118 |
Q |
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| T |
17410410 |
aacctgtgcaaggactgtgattgcaggacacttgatcataggtatggtttacattccgtatattcaatgccctttttggaatttaatttagcaggcagtg |
17410509 |
T |
|
| Q |
119 |
attttaatcaaggacttaatatatattactaagtgtttgattattattttttatacttgttacgaaacttagt----agcttatttttcttatgttatct |
214 |
Q |
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| T |
17410510 |
attttaatcaaggacttaatatatattactaagtgtttgattattattttttatacttgttacgaaactgagttgttagcttatttttcttatgttatct |
17410609 |
T |
|
| Q |
215 |
catcatataaaatactactacaatcttgaaggacttgatgcatctaatgccgtctggacgctgctcatgtggaaccgagacatatgatatgccttcattt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17410610 |
catcatataaaatactactacaatcttgaaggacttgatgtatctaatgccgtctgggcgctgctcatgtggaaccgagacatatgatatgccttcattt |
17410709 |
T |
|
| Q |
315 |
ttggaggatattcatatctaaatctttatacttaatactgttacaactttgcaaacatttgatccgtcttccgaagcg--ttctctttttgaatgcttta |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
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| T |
17410710 |
ttggaggatattcatatctaaatctttatacttaatattgttacaactttgcaaacatttgatccgtcttccgaagcgttttctctgtttgaatgattta |
17410809 |
T |
|
| Q |
413 |
gttagaagttctgtttttacactattgcattgttcac-nnnnnnnnatcattattgcattgtttactgattatattcgctatacctgtgctcttttgcag |
511 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17410810 |
attagaagttctgtttttacactattgcattgttcactttttttttatcattatttcattgtttactgattatattcgctatacctgtgctcttttgcag |
17410909 |
T |
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| Q |
512 |
ctcctctaaagtttgttcaaactgctcccacag |
544 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
17410910 |
ctcctctaaagtatgttcaaactgctcccacag |
17410942 |
T |
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