View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_78 (Length: 238)
Name: NF0760_low_78
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 7278977 - 7278837
Alignment:
| Q |
3 |
atcaaaagggctatagttttgcgagaatttgttgatcaaattcaaacggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
102 |
Q |
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| T |
7278977 |
atcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
7278878 |
T |
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| Q |
103 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
143 |
Q |
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| T |
7278877 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
7278837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 7374862 - 7375002
Alignment:
| Q |
3 |
atcaaaagggctatagttttgcgagaatttgttgatcaaattcaaacggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
102 |
Q |
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|||||||||||||| ||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374862 |
atcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
7374961 |
T |
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| Q |
103 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374962 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
7375002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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