View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0761_high_3 (Length: 462)

Name: NF0761_high_3
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0761_high_3
NF0761_high_3
[»] chr4 (13 HSPs)
chr4 (14-433)||(36407337-36407756)
chr4 (14-433)||(36412460-36412879)
chr4 (18-433)||(36399880-36400292)
chr4 (32-350)||(36419605-36419918)
chr4 (23-403)||(36401206-36401573)
chr4 (22-433)||(36370675-36371091)
chr4 (22-350)||(36389768-36390099)
chr4 (19-350)||(36429568-36429884)
chr4 (184-350)||(36436030-36436196)
chr4 (184-350)||(36376532-36376698)
chr4 (22-123)||(36436263-36436364)
chr4 (23-123)||(36376753-36376853)
chr4 (19-56)||(36418856-36418893)
[»] chr8 (6 HSPs)
chr8 (286-347)||(19357642-19357703)
chr8 (284-346)||(19500330-19500392)
chr8 (286-347)||(19339621-19339682)
chr8 (284-344)||(19407651-19407711)
chr8 (284-344)||(19551313-19551373)
chr8 (284-344)||(19581315-19581375)
[»] chr2 (1 HSPs)
chr2 (310-347)||(2711998-2712035)
[»] chr5 (1 HSPs)
chr5 (308-344)||(482848-482884)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 36407756 - 36407337
Alignment:
Q  14 atatcaggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36407756 atatcaagaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt 36407657  T
Q  114 taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36407656 taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggag 36407557  T
Q  214 tctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtcctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36407556 tctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtcctt 36407457  T
Q  314 ccattgcatattctggtgacatatatccactgcaattnnnnnnnntggttagagtatcataaaaatacatatccatctgtatattttcgtgatataagtg 413  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36407456 ccattgcatattctggtgacatatatccactgcaattaaacaaaatggttagagtatcataaaaatacatatccatctgtatattttcgtgatataagtg 36407357  T
Q  414 tgtgacacatactatgttcc 433  Q
    ||||||||||||||||||||    
T  36407356 tgtgacacatactatgttcc 36407337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 36412879 - 36412460
Alignment:
Q  14 atatcaggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412879 atatcaagaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt 36412780  T
Q  114 taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412779 taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggag 36412680  T
Q  214 tctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtcctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412679 tctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtcctt 36412580  T
Q  314 ccattgcatattctggtgacatatatccactgcaattnnnnnnnntggttagagtatcataaaaatacatatccatctgtatattttcgtgatataagtg 413  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412579 ccattgcatattctggtgacatatatccactgcaattaaacaaaatggttagagtatcataaaaatacatatccatctgtatattttcgtgatataagtg 36412480  T
Q  414 tgtgacacatactatgttcc 433  Q
    ||||||||||||||||||||    
T  36412479 tgtgacacatactatgttcc 36412460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 36400292 - 36399880
Alignment:
Q  18 caggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaa 117  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||||| |   ||||||||    
T  36400292 cagggggataagactggtttagtgcttcatcaactatatccaaggccctttcttctgtccatacagtccacacctataaatgcacaagag--tttttaaa 36400195  T
Q  118 taaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggagtctc 217  Q
    || | ||   |||| ||  ||||||||||||| ||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  36400194 tatacat---atgttatatatcattagattgtaggcctgttttaaggctactctttttaatatatttaacttacatgtccaattaaatttggggagtctc 36400098  T
Q  218 ttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36400097 ttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccat 36399998  T
Q  318 tgcatattctggtgacatatatccactgcaattnnnnnnnntggttagagtatcat-aaaaatacatatccatctgtatattttcgtga-tataagtgtg 415  Q
    ||||||||| |||||||| ||||||||||||||        ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||     
T  36399997 tgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatttcgtgattataagtgtt 36399898  T
Q  416 tgacacatactatgttcc 433  Q
    ||| ||||||||||||||    
T  36399897 tgagacatactatgttcc 36399880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 32 - 350
Target Start/End: Complemental strand, 36419918 - 36419605
Alignment:
Q  32 tggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaatatgtcatgt 131  Q
    |||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||| |||| |||  |||||||| ||   |||      
T  36419918 tggtttagtgcttgatcaaccatatccaaggcttttccttctgtccatagtgtccacacctacaaatgcataacataatgattaaataagta---cat-- 36419824  T
Q  132 catgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggagtctcttccaatttcacaa 231  Q
    |||||| ||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||    
T  36419823 catgcaccattaaattatcggccaattttaaggccactctttttattatatataacttacatgtccaattaaatttggggagtctcttcctgtctcacaa 36419724  T
Q  232 tgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggtg 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |    
T  36419723 tgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttgcattgcatattccggag 36419624  T
Q  332 acatatatccactgcaatt 350  Q
    |||||||||||||||||||    
T  36419623 acatatatccactgcaatt 36419605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 23 - 403
Target Start/End: Complemental strand, 36401573 - 36401206
Alignment:
Q  23 ggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaat 122  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||  ||||||| ||||| |||||||||||||||   |  ||||| |    
T  36401573 ggataaaactggtttagttctggatcaactatatccaaggctcttccttctgtccactgtgtccatacctacaaatgcacaacacaaaaatctaataagt 36401474  T
Q  123 atgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgtaacttacatgtccaattaaatttggggagtctcttcca 222  Q
    |   ||| |  |||| | ||| ||| |||   ||||||||||||||    | |||||||    |||||||||||||||||||||||||||  |||||||     
T  36401473 a---catct--tgcaccgttaaattattgtt-aattttaaggctacc---tctattata----acttacatgtccaattaaatttggggaagctcttcct 36401387  T
Q  223 atttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccattgcat 322  Q
     ||||||||||||||||||| |  |||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  36401386 gtttcacaatgtgtgtttctttgaccagcaataatctctagcagtaagaccccataactaaagacatcagatttcgttgaatatcgtccttccattgcat 36401287  T
Q  323 attctggtgacatatatccactgcaattnnnnnnnntggttagagtatcataaaaatacatatccatctgtatattttcgt 403  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  36401286 attctggtgacatatatccactgcaattaaacaaaatggttagagtatcataaaaatacatatccatctgtatattttcgt 36401206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 22 - 433
Target Start/End: Complemental strand, 36371091 - 36370675
Alignment:
Q  22 aggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaa-tgcacaacacaatttttaaataa 120  Q
    ||||||||| |||||||||||| ||||||| ||||||||||| ||| |||||||||| ||||||||| |||| ||| ||||||||| ||  |||    ||    
T  36371091 aggataagaatggtttagtgcttgatcaaccatatccaaggcccttccttctgtccacagtgtccacgcctacaaaatgcacaacaaaaaattttctaaa 36370992  T
Q  121 atatgtcatgtcatgcatcattagattgttggccaattttaaggctactct-ttttattatatgtaacttacatgtccaattaaatttggggagtctctt 219  Q
     ||   |||  |||||| ||||| ||||||| || ||||| ||| || ||| |||| || | | |||||||||||||||||||||||||| || ||||||    
T  36370991 gta---cat--catgcaccattaaattgttgaccgatttttaggtta-tctcttttcttttttataacttacatgtccaattaaatttggtgattctctt 36370898  T
Q  220 ccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccattg 319  Q
    ||  ||||||||| ||||||||| | ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36370897 cctgtttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattg 36370798  T
Q  320 catattctggtgacatatatccactgcaatt--------nnnnnnnntggttagagtatcataaaaatacatatccatctgtatattttcgtga-tataa 410  Q
    |||||||||||||||||||| ||||||||||                || | ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  36370797 catattctggtgacatatattcactgcaattatacattatacaaaattgttaagagtatcataaaaatacatatccatctgtataatttcgtgattataa 36370698  T
Q  411 gtgtgtgacacatactatgttcc 433  Q
    |||| ||| ||||||||||||||    
T  36370697 gtgtttgagacatactatgttcc 36370675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 36390099 - 36389768
Alignment:
Q  22 aggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaa 121  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||  ||    
T  36390099 aggataagactggtttagtgctggatcaactgtatccaaggcccttccttctgtccatagtgtccacacctacaaatgtacaacacaatctttaaa--aa 36390002  T
Q  122 tatgtcatgtcatgcatcattagattgttggccaattttaaggctactcttt--ttattatatgt-----aacttacatgtccaattaaatttggggagt 214  Q
    ||   ||| | |  ||  |||| ||| | | |||||||||||| |||| |||  ||||| ||| |     ||||||||||||||||||||||  ||||      
T  36390001 taatacatctta--cacgattaaattttcgaccaattttaaggatactttttctttattttattttttagaacttacatgtccaattaaattcagggatg 36389904  T
Q  215 ctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttc 314  Q
    |||||||  ||||| ||||||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  36389903 ctcttcctgtttcagaatgtgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttc 36389804  T
Q  315 cattgcatattctggtgacatatatccactgcaatt 350  Q
    |||||||||||| |||||||| ||||||||||||||    
T  36389803 cattgcatattccggtgacatgtatccactgcaatt 36389768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 36429884 - 36429568
Alignment:
Q  19 aggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaat 118  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||   ||   | ||| ||         
T  36429884 aggaggataaaactggtttagttctggatcaactatatccaaggctcttccttctgtccatagtctccacacctacaaa---actcaaaaatctt----- 36429793  T
Q  119 aaatatgtcatgtcatgcatcattagattgttggccaattttaaggctac-tctttttattatatgtaacttacatgtccaattaaatttggggagtctc 217  Q
      ||| ||||  ||||| | | ||| || ||||||||||| ||||||| | ||||| ||||     ||||||||||||||||||||||||||||| ||||    
T  36429792 --ataagtcaa-tcatgtaccgttaaatcgttggccaattctaaggctgcctctttctatt-----taacttacatgtccaattaaatttggggattctc 36429701  T
Q  218 ttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccat 317  Q
    ||||  ||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36429700 ttcctttttcacaatgtgtgtttctttggccagcaatagtctccagtagtatgaccccataactgaagacatcagatttcgttgaatatcgtccttccat 36429601  T
Q  318 tgcatattctggtgacatatatccactgcaatt 350  Q
    |||||||||||||||||||||||| ||||||||    
T  36429600 tgcatattctggtgacatatatccgctgcaatt 36429568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 184 - 350
Target Start/End: Complemental strand, 36436196 - 36436030
Alignment:
Q  184 taacttacatgtccaattaaatttggggagtctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactga 283  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||| || ||| ||||||    
T  36436196 taacttacatgtccaattaaatttggggagtctcttcctgtttcacaatgtgtgtttctttggccagcaataatctccagtagtaaaacaccaaaactga 36436097  T
Q  284 agacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactgcaatt 350  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36436096 agacatccgatttagttgaatatcgtccttccattgcatattccggtgacatatatccactgcaatt 36436030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 184 - 350
Target Start/End: Complemental strand, 36376698 - 36376532
Alignment:
Q  184 taacttacatgtccaattaaatttggggagtctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactga 283  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||| |||||||||||||||||||| || ||| ||||||    
T  36376698 taacttacatgtccaattaaatttggggagtctcttcctgtttcacaatgtgtgtttctttggccggcaataatctccagtagtaaaacaccaaaactga 36376599  T
Q  284 agacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactgcaatt 350  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36376598 agacatccgatttagttgaatatcgtccttccattgcatattccggtgacatatatccactgcaatt 36376532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 36436364 - 36436263
Alignment:
Q  22 aggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaa 121  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  36436364 aggataagactggtttagtgctggatcaactgtatccaaggcccttccttctgtccatagtgtccacacctacaaatgtacaacacaatctttaaataaa 36436265  T
Q  122 ta 123  Q
    ||    
T  36436264 ta 36436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 36376853 - 36376753
Alignment:
Q  23 ggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaat 122  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  36376853 ggataaaactggtttagttctggatcaactatatccaaggctcttccttctgtccatagtgtccacacctacaaatgtacaacacaatctttaaataaat 36376754  T
Q  123 a 123  Q
    |    
T  36376753 a 36376753  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 36418893 - 36418856
Alignment:
Q  19 aggaggataagactggtttagtgctggatcaacaatat 56  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  36418893 aggaagataagactggtttagtgctggatcaaccatat 36418856  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 19357703 - 19357642
Alignment:
Q  286 acatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactgca 347  Q
    |||||||| ||||||||| |   ||||||||||||||||||||| ||||| |||||||||||    
T  19357703 acatcagactttgttgaacaaattccttccattgcatattctggagacatgtatccactgca 19357642  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 19500330 - 19500392
Alignment:
Q  284 agacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactgc 346  Q
    |||| ||||| ||||||||| ||  ||||||||| ||||||||||| ||||| ||||||||||    
T  19500330 agacgtcagactttgttgaacatattccttccatggcatattctggagacatgtatccactgc 19500392  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 19339682 - 19339621
Alignment:
Q  286 acatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactgca 347  Q
    |||||||| ||||||||| |   ||||||||| ||||||||||| ||||| |||||||||||    
T  19339682 acatcagactttgttgaacaaattccttccatggcatattctggagacatgtatccactgca 19339621  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 19407711 - 19407651
Alignment:
Q  284 agacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccact 344  Q
    |||||||||||||||| ||| |   ||||||||| ||||||||||| ||||| ||||||||    
T  19407711 agacatcagattttgtagaacaaactccttccatggcatattctggagacatgtatccact 19407651  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 19551313 - 19551373
Alignment:
Q  284 agacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccact 344  Q
    |||||||||||||||| ||| |   ||||||||| ||||||||||| ||||| ||||||||    
T  19551313 agacatcagattttgtagaacaaactccttccatggcatattctggagacatgtatccact 19551373  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 19581375 - 19581315
Alignment:
Q  284 agacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccact 344  Q
    |||||||||||||||| ||| |   ||||||||| ||||||||||| ||||| ||||||||    
T  19581375 agacatcagattttgtagaacaaactccttccatggcatattctggagacatgtatccact 19581315  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 2711998 - 2712035
Alignment:
Q  310 ccttccattgcatattctggtgacatatatccactgca 347  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  2711998 cctttcattgcatattctggagacatatatccactgca 2712035  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 482848 - 482884
Alignment:
Q  308 gtccttccattgcatattctggtgacatatatccact 344  Q
    |||||||||||||||||||||| | ||||||||||||    
T  482848 gtccttccattgcatattctggagccatatatccact 482884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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