View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0761_low_1 (Length: 498)
Name: NF0761_low_1
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0761_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 4170315 - 4170775
Alignment:
| Q |
11 |
cacagactgtatacacactttcaaagaaacagcatcgaacaccagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaa |
110 |
Q |
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| T |
4170315 |
cacagattgtatacacactttcaaagaaacagcatcgaacatcagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaa |
4170414 |
T |
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| Q |
111 |
gctaaagttgcgcgaaacgacttgcaacgaagcccaccgatcgaaccaattccagattctgtaatatcaacccaataatgcaaa-ccaagggatgacgaa |
209 |
Q |
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| T |
4170415 |
gctgaagttgcgcgaaacgacttgcaatgaagcccaccaaacgaaccaattccagattctgtaatatcaacccaataatgcaaatccaagggatgacgaa |
4170514 |
T |
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| Q |
210 |
tcggagaagaacaacaaacctatgtcataaaacataacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaagg |
309 |
Q |
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| T |
4170515 |
tcggagaagagcaacaaacctatgtcataaaacataacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaagg |
4170614 |
T |
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| Q |
310 |
atagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctt |
409 |
Q |
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| T |
4170615 |
atagatctcaataagagacaataatccagtacaaggagatattttgtagttttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctc |
4170714 |
T |
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| Q |
410 |
tcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgt |
470 |
Q |
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| T |
4170715 |
tcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgt |
4170775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 294 - 467
Target Start/End: Complemental strand, 4161229 - 4161056
Alignment:
| Q |
294 |
cattagtgttttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttcca |
393 |
Q |
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| T |
4161229 |
cattagtattttaaggatagatctctataagagacattaatccagtaaaaggagatattttgtaatcttggaagcctgcttctataaagagctttttcca |
4161130 |
T |
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| Q |
394 |
ttcttcctcatttctttcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagtt |
467 |
Q |
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| T |
4161129 |
ttcttcctcatttctctcttttccattaacacatgaaattgtaacattcatgagtagctttatttgagtaagtt |
4161056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 464
Target Start/End: Original strand, 4176443 - 4176604
Alignment:
| Q |
303 |
tttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctc |
402 |
Q |
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| T |
4176443 |
tttatggatagatctcaataagagacaaaaatccagtcaaaggagatatcttatagtcttggaaaccagcttctatgaagagtttcttccattcttcctc |
4176542 |
T |
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| Q |
403 |
atttctttcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaa |
464 |
Q |
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| T |
4176543 |
atttctctcttttccattaagacaagccatgtttacatccataaggagcttaatttgagtaa |
4176604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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