View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0761_low_13 (Length: 336)

Name: NF0761_low_13
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0761_low_13
NF0761_low_13
[»] chr8 (2 HSPs)
chr8 (26-322)||(30964642-30964939)
chr8 (1-71)||(30964846-30964916)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 30964939 - 30964642
Alignment:
Q  26 ataaacctcaataactaagtcttcatgtttgccttaatttgagctgcaataaacctcaataactaagtcttcatgtttgccttaatttgagctggataag 125  Q
    ||||||||||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30964939 ataaacctcaacaatcaagtattcatgtttgccttaatttgagctgcaataaacctcaataactaagtattcatgtttgccttaatttgagctggataag 30964840  T
Q  126 caaggaaacacacagctttgttttattctcttgacattgcatttaacacaaacatgcttcttcttgaggttgaattagttcaatcc-nnnnnnnggacga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||     
T  30964839 caaggaaacacacagctttgttttattctcttgacattgcatttaacacaaacatgcttcttcttgaggttgaattagttcaatcctttttttgggacgg 30964740  T
Q  225 gcatgtcctttgaagtgtgaatatgtttttctatttaaatttcccatcaggtaatattgtttgcttgcagaagatgaggatgatgatgatgtccatct 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30964739 gcatgtcctttgaagtgtgaatatgtttttctatttaaatttcccatcaggtaatattgtttgcttgcagaagatgaggatgatgatgatgttcatct 30964642  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30964916 - 30964846
Alignment:
Q  1 catgtttgccttaatttgagctgcaataaacctcaataactaagtcttcatgtttgccttaatttgagctg 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30964916 catgtttgccttaatttgagctgcaataaacctcaataactaagtattcatgtttgccttaatttgagctg 30964846  T

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