View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0761_low_19 (Length: 274)
Name: NF0761_low_19
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0761_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 4332619 - 4332426
Alignment:
| Q |
47 |
cgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctt |
146 |
Q |
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| T |
4332619 |
cgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagagatgtgaagtgaatgatgcgcgagtgtctt |
4332520 |
T |
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| Q |
147 |
tgcctctaaaactcaagaacacattgtactttcttatactatgaatatcaaaccgatc-tttggagcgaacatgtcatcaacgtctatgttcat |
239 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
4332519 |
cgcctctaaaactcaagaacacatcgtactttcttatactatgaatatcaaaccgatcttttggagcgaacatgtcatcagcgtctatgttcat |
4332426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 4356701 - 4356588
Alignment:
| Q |
68 |
tgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaaca |
167 |
Q |
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| T |
4356701 |
tgatcgtccttgaagacaataattccggcgttttgaagagagaaagtaagatgtgaagtgaatgatgctctagtgtcttctcctctaaaactcaaaaaca |
4356602 |
T |
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| Q |
168 |
cattgtactttctt |
181 |
Q |
| |
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||| |||||||||| |
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| T |
4356601 |
catcgtactttctt |
4356588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 4323974 - 4324086
Alignment:
| Q |
56 |
ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa |
155 |
Q |
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| T |
4323974 |
ctttgaagcgactgatcatccttgaaaatgaggattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgtcttctcctcgga |
4324073 |
T |
|
| Q |
156 |
aactcaagaacac |
168 |
Q |
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||||||| ||||| |
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| T |
4324074 |
aactcaaaaacac |
4324086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 5422167 - 5422053
Alignment:
| Q |
56 |
ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa |
155 |
Q |
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|||||||| |||| ||||||| ||||||| ||||||| | |||||||||| | | |||| ||||||||||||||||| ||||| || | ||||||| |
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| T |
5422167 |
ctttgaagcgaatcatcgtccctgaaaactttaattccgtaattttgaagagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaa |
5422068 |
T |
|
| Q |
156 |
aactcaagaacacat |
170 |
Q |
| |
|
|||| |||||||||| |
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| T |
5422067 |
aacttaagaacacat |
5422053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 5092902 - 5092790
Alignment:
| Q |
56 |
ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa |
155 |
Q |
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|||||||| |||| ||| ||| | ||||| ||||||||| ||||||| || | | |||| ||||||||||||||||| ||||| ||||| ||||||| |
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| T |
5092902 |
ctttgaagcgaatcatcatccctaaaaacattaattccagcattttgaagtgaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaa |
5092803 |
T |
|
| Q |
156 |
aactcaagaacac |
168 |
Q |
| |
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|||| |||||||| |
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| T |
5092802 |
aacttaagaacac |
5092790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 5160638 - 5160750
Alignment:
| Q |
56 |
ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa |
155 |
Q |
| |
|
|||| ||| |||| ||||||| | |||||| ||| ||||| | ||||||| | | | |||| ||||||||||||||||| ||||| ||||| ||||||| |
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| T |
5160638 |
ctttcaagagaatcatcgtccctaaaaacgttaagtccagcgttttgaagtgcagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaa |
5160737 |
T |
|
| Q |
156 |
aactcaagaacac |
168 |
Q |
| |
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|||| |||||||| |
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|
| T |
5160738 |
aacttaagaacac |
5160750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 5174107 - 5173995
Alignment:
| Q |
56 |
ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa |
155 |
Q |
| |
|
|||||||| |||| ||||||||| |||||| |||||||| | |||||||||| | | ||||||||||||||||| | ||| ||||| | |||||| | |
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| T |
5174107 |
ctttgaagtgaatcatcgtccttaaaaacgctaattccattgttttgaagagaagcgtataggtgtgaagtgaatgaagtgcgcgtgtcctcgcctctga |
5174008 |
T |
|
| Q |
156 |
aactcaagaacac |
168 |
Q |
| |
|
|||| |||||||| |
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| T |
5174007 |
aacttaagaacac |
5173995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 5149885 - 5149954
Alignment:
| Q |
99 |
tttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac |
168 |
Q |
| |
|
|||||||||| | | |||| |||||||||||||||||||| || |||| ||||||||||| |||||||| |
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| T |
5149885 |
tttgaagagaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacac |
5149954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 5070590 - 5070671
Alignment:
| Q |
89 |
attccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacat |
170 |
Q |
| |
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||||||||| || ||||||| | | |||| |||||||||||||| | ||||||||| | ||||| ||||| |||||||||| |
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| T |
5070590 |
attccagagtttcgaagagaagcatagagatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacat |
5070671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 34715183 - 34715254
Alignment:
| Q |
99 |
tttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacat |
170 |
Q |
| |
|
|||||||||| ||| |||| |||||||| ||| | ||||||| ||||| ||||| |||||||||||||||| |
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|
| T |
34715183 |
tttgaagagaggtatagagatgtgaagtcaatctttcgcgagtatctttccctctgaaactcaagaacacat |
34715254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 48016274 - 48016374
Alignment:
| Q |
68 |
tgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaaca |
167 |
Q |
| |
|
||||||||| | ||||| ||||||||||| |||||||||| | | |||| || ||||| || || || || ||||||||||||| |||||| | ||||| |
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| T |
48016274 |
tgatcgtccctataaacgttaattccagagttttgaagagaagcatagagatgcgaagtaaaggaagcacgtgtgtctttgcctcgaaaacttaggaaca |
48016373 |
T |
|
| Q |
168 |
c |
168 |
Q |
| |
|
| |
|
|
| T |
48016374 |
c |
48016374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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