View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0761_low_24 (Length: 251)
Name: NF0761_low_24
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0761_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 48345214 - 48344972
Alignment:
| Q |
1 |
gaagaagctgaagaacaagttgttgaagcttgtcctggtttacctttcctctctgcatttgagtcttcataagacgaaacagtttttgttttctttgtgt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48345214 |
gaagaagccgaagaacaagttgttgaagcttgtcctggtttacctttcctctctgcatttgagtcttcataagacgaaacagtttttgttttctttgtgt |
48345115 |
T |
|
| Q |
101 |
ttatgaagagagagttgagaaaacttgtgagttttccacctggtgaaatgggttgcttcacttttttgagattgttgtaaatcttcaaagctcttgattt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48345114 |
ttatgaagagagagttgagaaaacttgtgagttttccacctggtgaaatgggttgcttcacttttttgagattgttgtaaatcttcaacgctcttgattt |
48345015 |
T |
|
| Q |
201 |
tgatttgattaaggtatcttcatcgtttgcaatgattcatctc |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48345014 |
tgatttgattaaggtatcttcatcgtttgcaatgattcttctc |
48344972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 3758806 - 3758715
Alignment:
| Q |
109 |
agagagttgagaaaacttgtgagttttccacctggtgaaatgggttgcttcacttttttgagattgttgtaaatcttcaaagctcttgattt |
200 |
Q |
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||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || | || ||||||||||| | ||||||||||| |
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| T |
3758806 |
agagagttgaggaaactcgtgagttttccacctggcgaaatcggttgcttcactttcttcaagttattgtaaatcttaacggctcttgattt |
3758715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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