View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0761_low_5 (Length: 452)

Name: NF0761_low_5
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0761_low_5
NF0761_low_5
[»] chr2 (20 HSPs)
chr2 (93-452)||(37092014-37092358)
chr2 (252-318)||(17981594-17981660)
chr2 (253-326)||(25423833-25423906)
chr2 (263-326)||(5394485-5394548)
chr2 (245-318)||(14551571-14551644)
chr2 (245-326)||(37179972-37180053)
chr2 (255-326)||(31579210-31579281)
chr2 (255-318)||(42745097-42745160)
chr2 (266-328)||(7020352-7020414)
chr2 (264-326)||(9438126-9438188)
chr2 (253-326)||(18105342-18105414)
chr2 (262-328)||(13835445-13835511)
chr2 (286-328)||(14121894-14121936)
chr2 (245-320)||(17655756-17655833)
chr2 (245-317)||(1682120-1682192)
chr2 (245-312)||(14412824-14412891)
chr2 (265-327)||(3562181-3562243)
chr2 (277-323)||(39401072-39401118)
chr2 (262-315)||(38372982-38373035)
chr2 (264-320)||(39562260-39562316)
[»] chr8 (15 HSPs)
chr8 (245-323)||(2744025-2744103)
chr8 (245-326)||(4124995-4125076)
chr8 (245-326)||(7839224-7839305)
chr8 (245-326)||(30936093-30936174)
chr8 (245-328)||(19715696-19715780)
chr8 (245-326)||(13468716-13468797)
chr8 (266-320)||(12958077-12958131)
chr8 (255-312)||(39086855-39086912)
chr8 (245-320)||(8521793-8521867)
chr8 (285-326)||(30056012-30056053)
chr8 (262-327)||(40320184-40320249)
chr8 (277-320)||(36994503-36994546)
chr8 (262-324)||(13005666-13005728)
chr8 (281-328)||(24988586-24988633)
chr8 (285-326)||(15683018-15683059)
[»] chr4 (25 HSPs)
chr4 (245-326)||(31307037-31307118)
chr4 (93-213)||(17346262-17346382)
chr4 (245-328)||(9012357-9012440)
chr4 (96-213)||(17137415-17137529)
chr4 (252-326)||(38766178-38766252)
chr4 (262-326)||(51626294-51626358)
chr4 (245-327)||(35972431-35972513)
chr4 (262-328)||(14854692-14854758)
chr4 (263-328)||(33529344-33529409)
chr4 (245-326)||(46016238-46016319)
chr4 (253-325)||(35334077-35334149)
chr4 (245-320)||(45994617-45994692)
chr4 (262-328)||(15133462-15133528)
chr4 (245-326)||(46250526-46250607)
chr4 (269-324)||(13948587-13948642)
chr4 (381-448)||(17345574-17345641)
chr4 (277-327)||(13686690-13686740)
chr4 (255-305)||(32005127-32005177)
chr4 (383-448)||(17138878-17138943)
chr4 (255-327)||(18841573-18841646)
chr4 (278-327)||(36990098-36990147)
chr4 (271-327)||(25768685-25768741)
chr4 (262-326)||(31308386-31308450)
chr4 (283-327)||(51853784-51853828)
chr4 (123-199)||(55295338-55295414)
[»] chr7 (24 HSPs)
chr7 (245-326)||(29059894-29059975)
chr7 (245-326)||(31492192-31492273)
chr7 (238-318)||(37339697-37339777)
chr7 (253-320)||(21747019-21747086)
chr7 (246-320)||(31776513-31776587)
chr7 (245-318)||(28665187-28665260)
chr7 (245-328)||(19477223-19477303)
chr7 (245-328)||(11486715-11486798)
chr7 (245-326)||(28537479-28537556)
chr7 (253-320)||(35707941-35708008)
chr7 (245-328)||(32470003-32470088)
chr7 (263-328)||(20207584-20207649)
chr7 (246-323)||(45778956-45779033)
chr7 (245-328)||(33299166-33299249)
chr7 (288-326)||(14545032-14545070)
chr7 (262-328)||(24172296-24172362)
chr7 (277-327)||(29428795-29428845)
chr7 (263-307)||(36821069-36821113)
chr7 (262-321)||(3231313-3231372)
chr7 (265-323)||(28828756-28828814)
chr7 (262-320)||(42741797-42741854)
chr7 (245-311)||(8839251-8839318)
chr7 (243-320)||(25421210-25421286)
chr7 (290-326)||(13254117-13254153)
[»] chr5 (10 HSPs)
chr5 (245-326)||(5123469-5123550)
chr5 (245-326)||(10592016-10592097)
chr5 (245-318)||(22187969-22188042)
chr5 (255-326)||(30784967-30785038)
chr5 (245-320)||(31113429-31113504)
chr5 (262-323)||(29553631-29553692)
chr5 (245-328)||(25983752-25983835)
chr5 (278-327)||(36212984-36213033)
chr5 (262-327)||(373752-373817)
chr5 (140-187)||(6796801-6796848)
[»] chr3 (20 HSPs)
chr3 (245-318)||(8757441-8757514)
chr3 (245-326)||(20861337-20861418)
chr3 (245-320)||(55123192-55123267)
chr3 (245-326)||(27763810-27763891)
chr3 (245-326)||(30995936-30996017)
chr3 (245-328)||(25224786-25224869)
chr3 (245-324)||(1642697-1642776)
chr3 (245-328)||(48204282-48204365)
chr3 (262-328)||(38331215-38331281)
chr3 (245-327)||(44941236-44941317)
chr3 (246-328)||(22288322-22288404)
chr3 (246-319)||(39950308-39950381)
chr3 (262-307)||(40318437-40318482)
chr3 (284-327)||(15446084-15446127)
chr3 (286-327)||(15283159-15283200)
chr3 (246-293)||(22288643-22288690)
chr3 (245-328)||(40294699-40294782)
chr3 (245-327)||(46725513-46725594)
chr3 (262-328)||(48210948-48211014)
chr3 (245-320)||(25739182-25739258)
[»] scaffold0182 (1 HSPs)
scaffold0182 (244-326)||(26420-26502)
[»] chr6 (11 HSPs)
chr6 (245-325)||(12836868-12836948)
chr6 (248-326)||(12411237-12411315)
chr6 (251-323)||(28099335-28099407)
chr6 (264-324)||(9536858-9536918)
chr6 (245-319)||(21910301-21910374)
chr6 (275-327)||(21028843-21028895)
chr6 (275-327)||(21028980-21029032)
chr6 (288-326)||(423744-423782)
chr6 (264-326)||(31412211-31412273)
chr6 (263-318)||(17177235-17177290)
chr6 (277-327)||(28933226-28933276)
[»] chr1 (19 HSPs)
chr1 (262-326)||(42297430-42297494)
chr1 (245-319)||(16756178-16756252)
chr1 (262-327)||(15642543-15642608)
chr1 (245-326)||(36806700-36806781)
chr1 (257-326)||(28724761-28724830)
chr1 (245-326)||(49071666-49071747)
chr1 (245-325)||(9780960-9781040)
chr1 (262-310)||(18428130-18428178)
chr1 (92-211)||(8571852-8571971)
chr1 (262-320)||(22022215-22022273)
chr1 (262-328)||(44913196-44913262)
chr1 (262-328)||(46864178-46864244)
chr1 (285-326)||(12035639-12035680)
chr1 (245-320)||(10367599-10367674)
chr1 (261-301)||(7242794-7242834)
chr1 (280-319)||(6607700-6607739)
chr1 (273-304)||(21774671-21774702)
chr1 (262-328)||(10750684-10750750)
chr1 (255-313)||(32534184-32534242)
[»] scaffold0013 (1 HSPs)
scaffold0013 (245-319)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (262-328)||(27213-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (284-327)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 93 - 452
Target Start/End: Original strand, 37092014 - 37092358
Alignment:
Q  93 ctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092014 ctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcc 37092113  T
Q  193 tctgctgcactccattcctattaagaatcatcacatactgttaacattagtcttttttggtataaacccggtatcctccgcgcacaactgcggagactaa 292  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  37092114 tctgctgcactccattcctattaagaatcatcacatactcttaacattagtcttttttggtgtaaaccgggtatcctccgtgcacaactgcggagactaa 37092213  T
Q  293 tccctcgagcattgtgggacccaaatggacggcaagatgatactttnnnnnnnnnnnnnctaaacaagaaagttagaagagagagtaaactaaccaagaa 392  Q
    ||||||||||| |||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  37092214 tccctcgagcactgtgggacccaaatggacggcaagatgatactt---------------taaacaagaaagttagaagagagagtaaactaaccaagaa 37092298  T
Q  393 ataaggaaaggttgatccaagttattgaaaacactaacaatcaagttatcattagtgaca 452  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37092299 ataaggaaaggttgatccaagctattgaaaacactaacaatcaagttatcattagtgaca 37092358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 17981660 - 17981594
Alignment:
Q  252 gtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  17981660 gtataaaccgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat 17981594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 25423906 - 25423833
Alignment:
Q  253 tataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||| | |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25423906 tataaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggca 25423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 5394548 - 5394485
Alignment:
Q  263 gtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5394548 gtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggca 5394485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 14551644 - 14551571
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    |||||||||||||| |  |||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||    
T  14551644 ttttttggtataaatcgagtatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaat 14551571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 37179972 - 37180053
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||| | |||||||||||||| ||| |||| |||||||||||||||| |||||||||| ||||||| |||||    
T  37179972 ttttttggtgtaaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggca 37180053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 31579210 - 31579281
Alignment:
Q  255 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||  |||||| |||||    
T  31579210 taaaccgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggca 31579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 42745097 - 42745160
Alignment:
Q  255 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||    
T  42745097 taaaccgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaat 42745160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 7020352 - 7020414
Alignment:
Q  266 tcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||| ||||||  |||||||||| |||||||||||| |||||||||||| |||||||    
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaag 7020414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 9438126 - 9438188
Alignment:
Q  264 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||| |||||| ||| ||||||||||| ||||||||||||| ||||||| |||||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggca 9438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 18105342 - 18105414
Alignment:
Q  253 tataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||| | |||||||||||| |||||||| |||||||||||||||| |||||| ||| ||||||| |||||    
T  18105342 tataaaccggatatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggca 18105414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 13835445 - 13835511
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||| | ||||||||| || ||||||||||| | ||||||||||| |||||| ||||||||    
T  13835445 ggtatcctccacacacaactgcagaaactaatccctcaaacattgtgggactcaaatgaacggcaag 13835511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 14121894 - 14121936
Alignment:
Q  286 agactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaag 14121936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 17655833 - 17655756
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcac--aactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||||  |||| | |||||||||| |||||  ||||||||||||||||||||||||| |||||| | ||||||||    
T  17655833 ttttttggcgtaaatcaggtatcctcctcgcacgcaactgcggagactaatccctcgagccttgtggaatccaaatgg 17655756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 1682192 - 1682120
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaa 317  Q
    |||||| |||||||   ||||||||| | || ||||||||||||||||||||||||| ||| | |||||||||    
T  1682192 tttttttgtataaattgggtatcctctgtgcgcaactgcggagactaatccctcgagtattataggacccaaa 1682120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 14412891 - 14412824
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggac 312  Q
    |||||| |||||||   |||||||| ||||||||||||| ||||||||| ||| ||||||| ||||||    
T  14412891 tttttttgtataaatttggtatccttcgcgcacaactgcagagactaattccttgagcattatgggac 14412824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 3562181 - 3562243
Alignment:
Q  265 atcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||| |||||| |||||||| |||||| | |||| ||| ||||||||||||||||| ||||||    
T  3562181 atccgccgcgcgcaactgcgaagactagtacctcaagctttgtgggacccaaatgggcggcaa 3562243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 39401072 - 39401118
Alignment:
Q  277 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 323  Q
    ||||||||||| |||||| | |||||||||||||||| |||||||||    
T  39401072 caactgcggagtctaatctcacgagcattgtgggacctaaatggacg 39401118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 38372982 - 38373035
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggaccca 315  Q
    |||||||||||||| ||||||   |||||||| ||| |||||||||||||||||    
T  38372982 ggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccca 38373035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 39562316 - 39562260
Alignment:
Q  264 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||||| ||||||||||||||| |||||| ||||  |||||||||  |||||||    
T  39562316 tatcctccgagcacaactgcggagattaatccttcgaatattgtgggattcaaatgg 39562260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 2744103 - 2744025
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 323  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2744103 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacg 2744025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 4124995 - 4125076
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4124995 ttttttggtgtaaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 4125076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 7839224 - 7839305
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7839224 tttttttgtataacccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 7839305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 30936174 - 30936093
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||||| |||| | ||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  30936174 ttttttggtataaaccgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggca 30936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 19715696 - 19715780
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaat-ccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||| || |||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19715696 tttttttgtgtaaaccaggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaag 19715780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 13468716 - 13468797
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||| ||| |||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  13468716 tttttgggtgtaaaccgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggca 13468797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 12958077 - 12958131
Alignment:
Q  266 tcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgg 12958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 39086912 - 39086855
Alignment:
Q  255 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggac 312  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  39086912 taaaccaggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggac 39086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 8521867 - 8521793
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||||| |||| | |||||| ||||||| |||||| ||| ||||||||||||||||||||||||| |||||||    
T  8521867 ttttttggtgtaaatcgggtatcttccgcgcgcaactg-ggatactaatccctcgagcattgtgggactcaaatgg 8521793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 30056012 - 30056053
Alignment:
Q  285 gagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  30056012 gagactaatccctcgagcattgtggaacccaaatggacggca 30056053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 40320249 - 40320184
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||||||| |||||| | |||||||||| ||||||||| |||||| |||||| ||||||||    
T  40320249 ggtatcctccgcgtacaactacagagactaatctctcgagcatcgtgggatccaaatagacggcaa 40320184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 320
Target Start/End: Original strand, 36994503 - 36994546
Alignment:
Q  277 caactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  36994503 caactgcagagactaatccctcgagccttgtgggacccaaatgg 36994546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 13005666 - 13005728
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 324  Q
    |||||| |||||||| ||||||||||||| ||| || |||| |||||||||| ||||||||||    
T  13005666 ggtatcttccgcgcagaactgcggagactgatctcttgagccttgtgggacctaaatggacgg 13005728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 24988633 - 24988586
Alignment:
Q  281 tgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  24988633 tgcggagactaatccctcgagtattgtgggactcaaatgagcggcaag 24988586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 15683059 - 15683018
Alignment:
Q  285 gagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggca 15683018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 31307037 - 31307118
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31307037 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 31307118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 17346382 - 17346262
Alignment:
Q  93 ctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcc 192  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||| |  |||||||| ||||| ||||| |||||||| |||||||| || ||||    
T  17346382 ctaccaatctgatcttttacttgaagaatataagtgaagttctgtcctggagagattggacaatttgtaccatacactccatcctgccatgagtttctcc 17346283  T
Q  193 tctgctgcactccattcctat 213  Q
    ||||  |||||||||||||||    
T  17346282 tctgtagcactccattcctat 17346262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 9012440 - 9012357
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9012440 tttttgggtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaag 9012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 17137415 - 17137529
Alignment:
Q  96 ccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctct 195  Q
    ||||||||||||||||||||||||| ||||||   |||||  ||||| |  |||||||| ||||| ||||| ||||||||||||||||| || |||||||    
T  17137415 ccaatctgatcttttacttgaagaatataagt---gttctttcctggagagattggacaatttgtaccatacactccatcttgccatgagtttctcctct 17137511  T
Q  196 gctgcactccattcctat 213  Q
    || |||||||||||||||    
T  17137512 gcagcactccattcctat 17137529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 38766252 - 38766178
Alignment:
Q  252 gtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  38766252 gtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggca 38766178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 51626294 - 51626358
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  51626294 ggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggca 51626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 35972513 - 35972431
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||| |||||  |||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  35972513 ttttttggtgtaaactaggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaa 35972431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 14854758 - 14854692
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| |||||||    
T  14854758 ggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaag 14854692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 33529409 - 33529344
Alignment:
Q  263 gtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||| || |||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  33529409 gtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaag 33529344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 46016319 - 46016238
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||| | |||||||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||| |||||    
T  46016319 ttttttggtgtaaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggca 46016238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 35334077 - 35334149
Alignment:
Q  253 tataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggc 325  Q
    |||||||| | |||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  35334077 tataaaccggatatccttcacgcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggc 35334149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 45994692 - 45994617
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||||||||||  ||||||||  |||  |||||||||||||||||| ||||||||||||| |||||||||||    
T  45994692 ttttttggtataaactgggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgg 45994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 15133528 - 15133462
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||||||| |||||||||||||||||| ||| | |||||||||||||||| ||||| ||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaacggacgacaag 15133462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 46250526 - 46250607
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| ||| || | |||||||| |||||||| |||||||||||| | |||||||| ||||||||||||||| |||||    
T  46250526 ttttttggtgtaatccggttatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggca 46250607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 13948587 - 13948642
Alignment:
Q  269 tccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 324  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacgg 13948642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 448
Target Start/End: Complemental strand, 17345641 - 17345574
Alignment:
Q  381 actaaccaagaaataaggaaaggttgatccaagttattgaaaacactaacaatcaagttatcattagt 448  Q
    |||||||||||||| |||||||||| ||||||| |||| |||||| | | |||||| |||||||||||    
T  17345641 actaaccaagaaatgaggaaaggttcatccaagctattaaaaacattgataatcaaattatcattagt 17345574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 13686740 - 13686690
Alignment:
Q  277 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||| ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  13686740 caactgtggagactaatctctcgagccttgtgagacccaaatggacggcaa 13686690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 32005127 - 32005177
Alignment:
Q  255 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcatt 305  Q
    |||||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  32005127 taaaccgggtatcctccgcgcataattgcggagactaatctctcgagcatt 32005177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 17138878 - 17138943
Alignment:
Q  383 taaccaagaaataaggaaaggttgatccaagttattgaaaacactaacaatcaagttatcattagt 448  Q
    |||||||||||| |||||||||| ||||||| | ||||||||| | | |||||| |||||||||||    
T  17138878 taaccaagaaatgaggaaaggttcatccaagctgttgaaaacattgataatcaaattatcattagt 17138943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 18841646 - 18841573
Alignment:
Q  255 taaacccggtatcctccgcgcacaact-gcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||| ||||||||||| || ||||| |||||||||||||||| |||| |||| ||| |||||| | ||||||    
T  18841646 taaaccaggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaa 18841573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 36990098 - 36990147
Alignment:
Q  278 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||| | |||||| |||||||||||||||||  ||||||||||||||    
T  36990098 aactgcgaatactaattcctcgagcattgtgggattcaaatggacggcaa 36990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 25768685 - 25768741
Alignment:
Q  271 cgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||| ||| || |||||||||||| || |||||||||| |||||||||| ||||||    
T  25768685 cgcgcgcaattgtggagactaatccttcaagcattgtggcacccaaatgggcggcaa 25768741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 31308450 - 31308386
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||| |||||| |||||||| |  |||||||||||| | |||||||||||| |||| |||||||    
T  31308450 ggtattctccgcacacaactgagaggactaatccctcaaacattgtgggacctaaatagacggca 31308386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 51853828 - 51853784
Alignment:
Q  283 cggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||||||||||||| |||||| |||| |||||||| ||||    
T  51853828 cggagactaatccctcgagtattgtgagaccaaaatggaccgcaa 51853784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 55295414 - 55295338
Alignment:
Q  123 taagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctg 199  Q
    ||||| ||||||| ||| || || || ||||||||||| ||| | |||||||| |||||||| |||||||| |||||    
T  55295414 taagtgaagttcttcccaggcgggatcggacagtttgtgccagaaactccatcctgccatgagttcctcctgtgctg 55295338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 29059975 - 29059894
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  29059975 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggca 29059894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 31492273 - 31492192
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  31492273 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggca 31492192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 37339697 - 37339777
Alignment:
Q  238 attagtcttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    |||||| |||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  37339697 attagtattttttggtataaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaat 37339777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 21747019 - 21747086
Alignment:
Q  253 tataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21747019 tataaaccaggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgg 21747086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 31776587 - 31776513
Alignment:
Q  246 tttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||||||||||| |||||||||||| | |||||||| ||| |||||||||||| ||||||||||||||||||    
T  31776587 tttttggtataaaccaggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgg 31776513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 28665260 - 28665187
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    |||||| || |||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  28665260 tttttttgtgtaaactgggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggaccaaaat 28665187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 19477223 - 19477303
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| ||| |||||| | |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  19477223 tttttgggtgtaaaccagctatcctccgcgca--actgcggagactaatccctc-agcattgtgggacccaaatggccggcaag 19477303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 11486715 - 11486798
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||| || |||||| |||||||||||||| ||||||  |||||||||| || ||||||||||| |||||||||| |||||||    
T  11486715 tttttttgtgtaaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaag 11486798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 28537556 - 28537479
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||||| |||||||| ||||  |||||||||||||||||||||| |||||    |||||||||||| |||||    
T  28537556 ttttttggtataaaccgggtatccttcgcgtgcaactgcggagactaatccctcaagcat----ggacccaaatgggcggca 28537479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 35708008 - 35707941
Alignment:
Q  253 tataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||| ||| | ||||||    
T  35708008 tataaaccgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgg 35707941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 32470088 - 32470003
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagc--attgtgggacccaaatggacggcaag 328  Q
    ||||| |||||||||| | |||||||||||  |||||||| | ||||||| |||||||  |||||| |||||||||||||||||||    
T  32470088 tttttgggtataaaccagatatcctccgcgtgcaactgcgaacactaatctctcgagcatattgtgagacccaaatggacggcaag 32470003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 20207649 - 20207584
Alignment:
Q  263 gtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||| | || ||||||||||||||||||||||||||||||| ||| |||||||  |||||||    
T  20207649 gtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaag 20207584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 45779033 - 45778956
Alignment:
Q  246 tttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 323  Q
    |||||||| |||||| ||||||||||   | ||||||||||||||||||||||||| |||||| ||| |||| |||||    
T  45779033 tttttggtgtaaaccaggtatcctccattcgcaactgcggagactaatccctcgagtattgtgagactcaaacggacg 45778956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 33299249 - 33299166
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||| || |||||| ||||| |||| |||| |||||||||||||||||| |  |||||||||| | ||||||||| ||||||    
T  33299249 tttttttgtgtaaaccgggtattctccacgcataactgcggagactaatccattaagcattgtggaatccaaatggatggcaag 33299166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 14545070 - 14545032
Alignment:
Q  288 actaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggca 14545032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 24172362 - 24172296
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| |||||||| |||||||  |||||||||| ||||||||||||||| |||| ||| |||||||    
T  24172362 ggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaag 24172296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 29428795 - 29428845
Alignment:
Q  277 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  29428795 caactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaa 29428845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 36821069 - 36821113
Alignment:
Q  263 gtatcctccgcgcacaactgcggagactaatccctcgagcattgt 307  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  36821069 gtatcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 3231372 - 3231313
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgga 321  Q
    ||||||||||||| |||||||  ||| |||||| ||||| |||||||||||| |||||||    
T  3231372 ggtatcctccgcgtacaactggtgagtctaatctctcgaacattgtgggacctaaatgga 3231313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 28828756 - 28828814
Alignment:
Q  265 atcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 323  Q
    ||||||||||  |||||||| |||||||||| | |||| ||||| ||||||||||||||    
T  28828756 atcctccgcgagcaactgcgcagactaatccattgagccttgtgagacccaaatggacg 28828814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 42741797 - 42741854
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||||||||| ||||||| |||| |||||||||||| ||| | ||||||||||||    
T  42741797 ggtatcctccgcgcgcaactgcagagattaatccctcgagtattat-ggacccaaatgg 42741854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 8839251 - 8839318
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcg--cacaactgcggagactaatccctcgagcattgtggga 311  Q
    |||||||||||||| | |||||| ||||||  | ||| ||||||||||||||||||||| |||||||||    
T  8839251 ttttttggtataaatcgggtatc-tccgcgtgcgcaattgcggagactaatccctcgagtattgtggga 8839318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 25421210 - 25421286
Alignment:
Q  243 tcttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||||||| |||||  |||||||||| |  ||||||||  | |||||||||| |||| |||||||||||||||||    
T  25421210 tcttttttggtgtaaactgggtatcctccact-acaactgcaaacactaatcccttgagctttgtgggacccaaatgg 25421286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 13254117 - 13254153
Alignment:
Q  290 taatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||||||||||||| |||||| |||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggca 13254153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 5123469 - 5123550
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5123469 ttttttggtgtaaacagggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 5123550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 10592097 - 10592016
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  10592097 ttttttggtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggca 10592016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 22187969 - 22188042
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  22187969 ttttttggtgtaagccgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaat 22188042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 30784967 - 30785038
Alignment:
Q  255 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||| |||||||||||||| ||||||||||||||||||||| || ||||||| |||| ||||||| ||||    
T  30784967 taaaccaggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggca 30785038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 31113504 - 31113429
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||| || |||| | |||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  31113504 tttttttgtgtaaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgg 31113429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 29553692 - 29553631
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 323  Q
    |||||||||| ||||||||||| |||||||||| || ||||||| |||||||||||||||||    
T  29553692 ggtatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacg 29553631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 25983835 - 25983752
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| ||| |||||| ||||||||||| |  |||||||||||||||||| ||||| |||| |||||| ||||||| |||||||    
T  25983835 tttttgggtgtaaaccgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaag 25983752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 36213033 - 36212984
Alignment:
Q  278 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaa 36212984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 373752 - 373817
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||||| || |||||||||||| |||||||| || ||||||  ||||||||| ||||||||    
T  373752 ggtatcctccgtgcgcaactgcggagattaatcccttgaacattgtatgacccaaatagacggcaa 373817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 6796848 - 6796801
Alignment:
Q  140 tggtggaattggacagtttgttccatatactccatcttgccatgaatt 187  Q
    ||||||||| ||||||||||||||   |||||||||||||||||||||    
T  6796848 tggtggaataggacagtttgttcccagtactccatcttgccatgaatt 6796801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 8757514 - 8757441
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8757514 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaat 8757441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 20861418 - 20861337
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  20861418 ttttttggtataaactgggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggca 20861337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 55123267 - 55123192
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  55123267 ttttttggtataaatcaggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgg 55123192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 27763891 - 27763810
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||| || |||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27763891 tttttttgtgtaaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggca 27763810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 30995936 - 30996017
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||| ||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  30995936 tttttaggtgtaaaccagatatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggca 30996017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 25224869 - 25224786
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| ||| |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  25224869 tttttgggtgtaaaccgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaag 25224786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 1642776 - 1642697
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 324  Q
    ||||||||| |||| | | |||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||    
T  1642776 ttttttggtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacgg 1642697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 48204282 - 48204365
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| ||| |||| | |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||| ||||    
T  48204282 tttttgggtgtaaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaag 48204365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 38331281 - 38331215
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  38331281 ggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaag 38331215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 44941236 - 44941317
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||||||||||||  | |||||||||||| ||||||||||||||||| ||||||||||  ||||| |||||||| ||||||    
T  44941236 ttttttggtataaactggatatcctccgcgcgcaactgcggagactaat-cctcgagcataatgggatccaaatgggcggcaa 44941317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 22288404 - 22288322
Alignment:
Q  246 tttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||| || |||||| |||||||||||||||||||||| ||||||||| ||| ||| ||||||  || |||||||||| ||||    
T  22288404 ttttttgtgtaaaccgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaag 22288322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 39950381 - 39950308
Alignment:
Q  246 tttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 319  Q
    |||||||||||||   ||||||||||||   ||||||||||||||||||| ||||||||||| ||| |||||||    
T  39950381 tttttggtataaattgggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatg 39950308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 40318437 - 40318482
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgt 307  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  40318437 ggtatcctccgcgcgcaactgcggagactaatccctcgaacattgt 40318482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 15446127 - 15446084
Alignment:
Q  284 ggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  15446127 ggagactaatccgtcgagcattgtgagacccaaatggacggcaa 15446084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 15283200 - 15283159
Alignment:
Q  286 agactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggcaa 15283159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 22288690 - 22288643
Alignment:
Q  246 tttttggtataaacccggtatcctccgcgcacaactgcggagactaat 293  Q
    ||||| || |||||| |||||||||||||||||||||| |||||||||    
T  22288690 ttttttgtgtaaaccgggtatcctccgcgcacaactgcagagactaat 22288643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 40294782 - 40294699
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||||||| |||| | ||||||||  | || ||||||||||||||||||| ||||| |||||||||  ||||||  |||||||    
T  40294782 ttttttggtgtaaatcgggtatcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaag 40294699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 46725594 - 46725513
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||| ||| ||||||  |||||||||||||  |||||  |||||||||||||| |||||||| ||||||| |||||| ||||    
T  46725594 tttttgggtgtaaaccaagtatcctccgcgcgtaactgaagagactaatccctcaagcattgt-ggacccagatggacagcaa 46725513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 48210948 - 48211014
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||| ||||||  ||||||||||||  ||| ||||||| ||||||||||| |||| |||||||||    
T  48210948 ggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaag 48211014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 25739258 - 25739182
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaac-tgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    ||||||||| |||||| |||||||||||| | |||| |||||||||||||   |||||  || ||||||||||||||    
T  25739258 ttttttggtgtaaaccgggtatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgg 25739182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 26502 - 26420
Alignment:
Q  244 cttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  26502 cttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggca 26420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 12836868 - 12836948
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggc 325  Q
    ||||| |||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  12836868 tttttgggtataaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggc 12836948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 12411315 - 12411237
Alignment:
Q  248 tttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||||||| ||||||| |||||| |||||| ||||||||||||||| |||||||||||||  |||||| |||||    
T  12411315 tttggtataaaccgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggca 12411237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 28099407 - 28099335
Alignment:
Q  251 ggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 323  Q
    |||||||||  |||||||||||| | ||||||||||||||||||||||||||||| ||| || ||||||||||    
T  28099407 ggtataaactgggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacg 28099335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 9536918 - 9536858
Alignment:
Q  264 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 324  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacgg 9536858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 21910374 - 21910301
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 319  Q
    ||||| ||| |||||| |||||||||||||  ||||||||||||||||||||| ||| ||||||||||| |||||    
T  21910374 tttttgggtgtaaaccaggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatg 21910301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 21028843 - 21028895
Alignment:
Q  275 cacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  21028843 cacaactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaa 21028895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 21028980 - 21029032
Alignment:
Q  275 cacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  21028980 cacaactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaa 21029032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 423782 - 423744
Alignment:
Q  288 actaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggca 423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 31412273 - 31412211
Alignment:
Q  264 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| || |||||| ||||||||||  |||||||||||||| |||||||||| |||||    
T  31412273 tatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggca 31412211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 17177290 - 17177235
Alignment:
Q  263 gtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 318  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||| || ||||||    
T  17177290 gtatcctccgcgcacaattacggagattaatccctcgagtattgtgagatccaaat 17177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 28933276 - 28933226
Alignment:
Q  277 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||||||| |||| || |||||||||||||| |||||||||| ||||||    
T  28933276 caactgcggatactattcactcgagcattgtggaacccaaatgggcggcaa 28933226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 42297430 - 42297494
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggca 42297494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 16756252 - 16756178
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 319  Q
    ||||||||| |||| |  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16756252 ttttttggtgtaaatcgagtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatg 16756178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 15642608 - 15642543
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  15642608 ggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaa 15642543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 36806781 - 36806700
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||| ||| |||||| |||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  36806781 tttttgggtgtaaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggca 36806700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 28724830 - 28724761
Alignment:
Q  257 aacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||| |||| |||||||||||||    
T  28724830 aaccgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggca 28724761  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 49071747 - 49071666
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    ||||||||| |||| | | |||| ||||| | |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  49071747 ttttttggtgtaaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaatgaacggca 49071666  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 9780960 - 9781040
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggc 325  Q
    |||||| ||| ||||  ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  9780960 tttttttgtacaaactgggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggc 9781040  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 18428130 - 18428178
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtggg 310  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  18428130 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggg 18428178  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 8571852 - 8571971
Alignment:
Q  92 actaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctc 191  Q
    ||||||||| ||||||||||||||||| |  || || |||||||  || |||||||| |||||  |||||||| | ||||||||||   |||| |||||     
T  8571852 actaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccatcttcgtatgagttcctt 8571951  T
Q  192 ctctgctgcactccattcct 211  Q
    |||||||| |||||||||||    
T  8571952 ctctgctggactccattcct 8571971  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 22022273 - 22022215
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||||||| ||  ||||||||||||||||||||||||  ||||||||||||||||||    
T  22022273 ggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgg 22022215  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 44913262 - 44913196
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||||||| ||||  |||||| |||||||||| |||||||||||||||||||| |||| |||||||    
T  44913262 ggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggcaag 44913196  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 46864244 - 46864178
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||||||  |||| ||||||| |||||||||||||||| |||||||  ||||||||||||||||||    
T  46864244 ggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaag 46864178  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 12035680 - 12035639
Alignment:
Q  285 gagactaatccctcgagcattgtgggacccaaatggacggca 326  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggca 12035639  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 10367674 - 10367599
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 320  Q
    |||||| ||||||| | ||||| || ||| | |||||||||||| |||||| ||||||||||| ||||||||||||    
T  10367674 tttttttgtataaatcgggtattcttcgcacgcaactgcggagattaatccttcgagcattgttggacccaaatgg 10367599  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 7242794 - 7242834
Alignment:
Q  261 cggtatcctccgcgcacaactgcggagactaatccctcgag 301  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  7242794 cggtatcttccgcgcgcaactgcggagactaatccctcgag 7242834  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 6607700 - 6607739
Alignment:
Q  280 ctgcggagactaatccctcgagcattgtgggacccaaatg 319  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6607700 ctgcggagactaatccctcgagcattgtgagacctaaatg 6607739  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 304
Target Start/End: Complemental strand, 21774702 - 21774671
Alignment:
Q  273 cgcacaactgcggagactaatccctcgagcat 304  Q
    ||||||||||||||||||||||||||||||||    
T  21774702 cgcacaactgcggagactaatccctcgagcat 21774671  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 10750750 - 10750684
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    ||||||||| |||| ||||||   ||||||||||||||| ||||||| || |||||||| |||||||    
T  10750750 ggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaag 10750684  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 32534242 - 32534184
Alignment:
Q  255 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacc 313  Q
    |||||| ||||||||| |||| ||| |||||||||||| | ||||||||||||| ||||    
T  32534242 taaaccaggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgagacc 32534184  T

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Target: scaffold0013 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 29123 - 29197
Alignment:
Q  245 ttttttggtataaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 319  Q
    |||||| || |||| | |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  29123 tttttttgtgtaaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaatg 29197  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 27213 - 27279
Alignment:
Q  262 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 328  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||| || |||||||| |||||||    
T  27213 ggtatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaag 27279  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 16065 - 16108
Alignment:
Q  284 ggagactaatccctcgagcattgtgggacccaaatggacggcaa 327  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  16065 ggagactaatccgtcgagcattgtgagacccaaatggacggcaa 16108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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