View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0761_low_7 (Length: 386)
Name: NF0761_low_7
Description: NF0761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0761_low_7 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0206 (1 HSPs) |
| | |
|
| [»] scaffold0771 (1 HSPs) |
| | |
|
| [»] scaffold0334 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 14635537 - 14635183
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14635537 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaagtcttggtcacagctcatcaccaactaagcaagcacgtgctctata |
14635438 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14635437 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
14635338 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14635337 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
14635238 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14635237 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
14635183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 14645237 - 14644883
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14645237 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaagtcttggtcacagctcatcaccaactaagcaagcacgtgctctata |
14645138 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14645137 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
14645038 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14645037 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
14644938 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14644937 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
14644883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 33292959 - 33292608
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33292959 |
gacatcatcaagatgatctaagcaaacatcatcaactgggcagcaagttacaaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
33292860 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33292859 |
attt-cgttcaagttttggttggaactgagagaatgatctgggtgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaaa |
33292762 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33292761 |
attcaaattcaaattgaaagcacaacagctctttattggcttgctctccaaggggttcagctctataaatagaagaggacattgaaggagaaatgcaaga |
33292662 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33292661 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatc-aatctcttca |
33292608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 15948170 - 15947818
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcat-caagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15948170 |
gacatcatcaagatgaccttagcaaacatcattcaagtgggcagcaagttacaaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
15948071 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15948070 |
aattt-cgttcaagttttggttggaactgagagaatgatctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaa |
15947973 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15947972 |
aattcaaattcaaattggaagcacaacaactctttattagcttgctctccaagg-attcagctctataaatagaagaggacattgaaggagaaatgcaag |
15947874 |
T |
|
| Q |
319 |
agtttgaaatacaaagcatttatctctctc-aaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
15947873 |
agtttgaaatacaaagcatttatctctctcaaaagaaaaagctatc-aatctcttca |
15947818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 11634830 - 11634762
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
11634830 |
ctctataaatagaagaggtcgttgaaggttaagagcaagagttttgaaatacaaaagcaattatctctc |
11634762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 22065695 - 22066048
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22065695 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
22065794 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22065795 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
22065894 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22065895 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
22065994 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
22065995 |
gtttgaaatacaaagcatttatttctctcaaagcaaaagctatc-aatctcttca |
22066048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 23883896 - 23884247
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23883896 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcatgtgctctaca |
23883995 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
23883996 |
attt-cgttcaagttttggttggaactgagagaatgatctgggcaaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccata |
23884093 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23884094 |
attcaaattcaaaatggaagcacaacagctctttattggcttgctctccaagggattcagctctataaatagaagaggacattgaaggagaaatgcaaga |
23884193 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23884194 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatc-aatctcttca |
23884247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 13218051 - 13218116
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||| |||| ||||||||| || ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13218051 |
tctataaatagaggaggtcattgaaggttaagagcaagagtttcaaatacaaaacatttatctctc |
13218116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 14272812 - 14272460
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14272812 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttacaaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
14272713 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14272712 |
attt-cgttcaagttttggttgggactgagagaatgttctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaaa |
14272615 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14272614 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaagggattcagctctataaatagaagaggacattgaaggagaaatgcaaga |
14272515 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctc-aaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
14272514 |
gtttgaaatacaaagcatttatctctctcaaaagcaaaagctatc-aatctcttca |
14272460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 14282679 - 14282326
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282679 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttacaaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
14282580 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctggg-cgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14282579 |
attt-cgttcaagttttggttgggactgagagaatgttctggggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaa |
14282482 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14282481 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaagggattcagctctataaatagaagaggacattgaaggagaaatgcaag |
14282382 |
T |
|
| Q |
319 |
agtttgaaatacaaagcatttatctctctc-aaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
14282381 |
agtttgaaatacaaagcatttatctctctcaaaagcaaaagctatc-aatctcttca |
14282326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 40 - 374
Target Start/End: Complemental strand, 3471722 - 3471392
Alignment:
| Q |
40 |
agcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattttcgttcaagttttgg |
138 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
3471722 |
agcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacagctcatcaccaacta-gcaagcacgtactctacaattt-cgttcaagttt-gg |
3471626 |
T |
|
| Q |
139 |
ttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaaattcaaattcaaattggaa |
238 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
3471625 |
ttgggactgagagaatattctgggaaaaactgaagaaacattctctacatgctttcttcccaagtctcttt-ggagccaaaattcgaattcaaattggaa |
3471527 |
T |
|
| Q |
239 |
gcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatt |
338 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3471526 |
gcacaacagctcttttttagcttgctttccaagggattcaactctataaatagaagaggatattgaaggagaaatgcaagagtttgaaatacaaagcatt |
3471427 |
T |
|
| Q |
339 |
tatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
3471426 |
tatctctctcaaagcaaaaactatc-aatctcttca |
3471392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 21633278 - 21633361
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatttatctctctcaaagcaaaagctatca |
364 |
Q |
| |
|
|||||||||||| ||| ||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21633278 |
tctataaatagagaaggtcattgaaggttaagagtaagaatttgaaatacaaagcatttatctctctcaaagcaaaagcaatca |
21633361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 21919875 - 21919799
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaa-gcatttatctctctcaaagcaaa |
356 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21919875 |
tctataaatagaggaagacatccaaggcaaaaaccaagagtttgaaatacaaaagcatttatctctctcaaagcaaa |
21919799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 12924744 - 12925096
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924744 |
gacatcatcaagatgaccttagcaaacatcatcaagtgggtagcaagttacaaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
12924843 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12924844 |
attt-cgttcaagttttggttggaactgagagaatgatctgtgcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaaa |
12924941 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
12924942 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaagggattcagctctataaatagaagaggacattgaaggagaaatgtaaga |
12925041 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctc-aaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
12925042 |
gtttgaaatacaaagcatttatctctctcaaaagcaaaagctat-aaatctcttca |
12925096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 42712967 - 42712652
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| | |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42712967 |
gacatcatcaagatgacttcagcaaaaatcattaagtgggcagcaagttacaaaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
42712868 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42712867 |
aattt-cgttcaagttttggttggaactgagagaatgatctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaa |
42712770 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42712769 |
aattcaaattcaaattggaagcacaacagctctttattggcttgctcttcaagggattcagctctataaatagaagaggacattgaaggagaaatgcaag |
42712670 |
T |
|
| Q |
319 |
agtttgaaatacaaagca |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42712669 |
agtttgaaatacaaagca |
42712652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 20037327 - 20037672
Alignment:
| Q |
25 |
catcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattt |
123 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||| || |||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20037327 |
catcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttggtcacatctcatcaccaacta-gcaagcacgtgctctacaattt |
20037425 |
T |
|
| Q |
124 |
tcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaaattc |
223 |
Q |
| |
|
||||||||||| |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
20037426 |
-cgttcaagttt-ggttgggactaagagaatgttctgggcgaaactgaagaaacattctctacatgctttctccccaactctcttt-ggagccaaaattc |
20037522 |
T |
|
| Q |
224 |
aaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaagagttt |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20037523 |
aaattcaaattggaagtacaacagctcttttttagcttgctctccaagggattcaactctataaatagaagaggacattgaaggagaaatgcaagagttt |
20037622 |
T |
|
| Q |
324 |
gaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20037623 |
gaaataaataacatttatctctctcaaagcaaaagctatc-aatctcttca |
20037672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 20029566 - 20029911
Alignment:
| Q |
25 |
catcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattt |
123 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||| || |||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20029566 |
catcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttggtcacatctcatcaccaacta-gcaagcacgtgctctacaattt |
20029664 |
T |
|
| Q |
124 |
tcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaaattc |
223 |
Q |
| |
|
||||||||||| |||||| ||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
20029665 |
-cgttcaagttt-ggttgggactaaaagaatgttctgggcgaaactgaagaaacattctctacatgctttctccccaactctcttt-ggagccaaaattc |
20029761 |
T |
|
| Q |
224 |
aaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaagagttt |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20029762 |
aaattcaaattggaaggacaacagctcttttttagcttgctctccaagggattcaactctataaatagaagaggacattgaaggagaaatgcaagagttt |
20029861 |
T |
|
| Q |
324 |
gaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20029862 |
gaaataaataacatttatctctctcaaagcaaaagctatc-aatctcttca |
20029911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 24633712 - 24633787
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatttatctctctcaaagcaaa |
356 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24633712 |
tctataaatagaggaagacatccaaggctaaaaccaagagtttgaaatacaaagcatttatctatctcaaagcaaa |
24633787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 18883661 - 18883593
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18883661 |
ctctataaatagaagaggtcattgaaggttaaaagcaagagttttgaaatacaaaagcaattatctctc |
18883593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 33592579 - 33592484
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatac-aaagcatttatctctctcaaagcaa--aagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||||| ||||||||||||| || |||||||| |||||||| |||||||||| |
|
|
| T |
33592579 |
tctataaatagaggaagacatccaaggcaaaaaccaagagtttgaaatacaaaagcatttatctttcacaaagcaaacaagctatc-aatctcttca |
33592484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 33602218 - 33602123
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatac-aaagcatttatctctctcaaagcaa--aagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||||| ||||||||||||| || |||||||| |||||||| |||||||||| |
|
|
| T |
33602218 |
tctataaatagaggaagacatccaaggcaaaaaccaagagtttgaaatacaaaagcatttatctttcacaaagcaaacaagctatc-aatctcttca |
33602123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 18232614 - 18232682
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18232614 |
ctctataaatagaagaggtcattgaaggttaagagcaagagttttgaaatacaaaagcaattatctctc |
18232682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 18242065 - 18242133
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18242065 |
ctctataaatagaagaggtcattgaaggttaagagcaagagttttgaaatacaaaagcaattatctctc |
18242133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 18251516 - 18251584
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18251516 |
ctctataaatagaagaggtcattgaaggttaagagcaagagttttgaaatacaaaagcaattatctctc |
18251584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 42896594 - 42896499
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatac-aaagcatttatctctctcaaagcaa--aagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||||| ||| ||||||||| || |||||||| |||||||| |||||||||| |
|
|
| T |
42896594 |
tctataaatagaggaagacatccaaggcaaaaaccaagagtttgaaatacaaaaacatttatctttcacaaagcaaacaagctatc-aatctcttca |
42896499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 20833822 - 20834173
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20833822 |
gacatcatcaagatgaccttagcaaacatcatcaagtgggcagcaagttacaaaggcttgatcacagctcatcaccaactaagcaagcacatgctctaca |
20833921 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| | ||| |
|
|
| T |
20833922 |
attt-cgttcaagttttggttgggactgagagaatgttctgggcgaaactgaagaaacattctctacatactttctccccaagtctcttt-ggaactaaa |
20834019 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20834020 |
attcaaattcaaattggaagcacaacaactctttattggcttgctctccaagggattcagctctataaatagaagaggacattgaaggagaaatgcaaga |
20834119 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20834120 |
gtttgaaatacaaagcatttatctctctcaaagcaaaagctatc-aatctcttca |
20834173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 33956296 - 33955946
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||| ||||| | |||||| |||||||||||||||||||||| | || ||||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
33956296 |
gacatcatcatgatgacttcagcaaaaatcatcaagtgggcagcaagtttcaaaaggcttgatcgcagctcatcaccaacta-gcaaacacgtgctctac |
33956198 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33956197 |
aattt-cgttcaagttt-ggttgggactgagagaatgtcctgggcaaaactgaagaaacattctctacatgctttctccccaagtctctttag-agccaa |
33956101 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33956100 |
aattcaaattcaaattggaagcacaacaactcttttttagcttgctctccaagggattcagctctataaatagaagaggacattgaaggagaaatgcaag |
33956001 |
T |
|
| Q |
319 |
agtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33956000 |
agtttgaaatacaaagcatttatctctctcaaagcaaaagctatc-aatctcttca |
33955946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 20035377 - 20035730
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatca---ccaactaagcaagcacgtgctc |
115 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||||||| || || ||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
20035377 |
gacatcatcaagatgacatcagcaaaaatcatcaagtgggcagcaagttacaaaaggtttgatcacacctcatcatcaccaacta-gcaagcacgtgctc |
20035475 |
T |
|
| Q |
116 |
tacaattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagc |
215 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||| ||||||| ||||| ||||||||| |||||||| |||||||| ||| ||||||||||||| ||||| |
|
|
| T |
20035476 |
tacaattt-cgttcaagttt-ggatgggactgggagaatgttctggtaaaaactgaagaaacattctttacatgctctcttcccaagtctcttt-ggagc |
20035572 |
T |
|
| Q |
216 |
caaaattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaact-ctataaatagaagaggacattgaaggagaaaag |
314 |
Q |
| |
|
|||| |||||||| |||||||||||| |||| |||||| |||||||| | ||||||| |||| | | ||||||||| ||||||||||||||||||||| | |
|
|
| T |
20035573 |
caaatttcaaatttaaattggaagcaaaacaactcttt-ttagcttgttttccaagggattccagttctataaataaaagaggacattgaaggagaaatg |
20035671 |
T |
|
| Q |
315 |
caagagtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
20035672 |
caagagtttgaaatgcaaagcatttatctctctcaaagcaaaagccatc-aatctcttca |
20035730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 11222940 - 11223075
Alignment:
| Q |
242 |
caacagctctttattagcttgctctccaaggaattcaact-ctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcattta |
340 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || || || ||||||||||| || | | |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
11222940 |
caacagctcttttttagcttgatctccaagacatacatcttctataaatagaggacgtctatgaaggttaaaagcaagagtttgaaacacaaagcattta |
11223039 |
T |
|
| Q |
341 |
tctctctcaaagcaaaa-gctatcaaatctcttcatc |
376 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
11223040 |
tctctctcaaagcaaaaggctatc-aatctcttcatc |
11223075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 22448776 - 22448677
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatac-aaagcattta--tctctctcaaagcaa--aagctatcaaatctcttcat |
375 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22448776 |
tctataaatagaggaagacatccaaggcaaaaatcaagagtttgaaatacaaaagcatttatctctctctcaaagcaaacaagctatc-aatctcttcat |
22448678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 22458094 - 22457995
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatac-aaagcattta--tctctctcaaagcaa--aagctatcaaatctcttcat |
375 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22458094 |
tctataaatagaggaagacatccaaggcaaaaatcaagagtttgaaatacaaaagcatttatctctctctcaaagcaaacaagctatc-aatctcttcat |
22457996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 24244543 - 24244475
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
24244543 |
ctctataaatagaagaggtcattgaaggttaagagcaagagttttgaaatacaaaagcaattatctctc |
24244475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 42733122 - 42733027
Alignment:
| Q |
242 |
caacagctctttattagcttgctctccaaggaattcaact-ctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagca |
336 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || || || ||||||||||| || | | |||||| |||||||||||||||||| |||||||| |
|
|
| T |
42733122 |
caacagctcttttttagcttgatctccaagacatacatcttctataaatagaggacgtctatgaaggttaaaagcaagagtttgaaacacaaagca |
42733027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 24291167 - 24291099
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| ||| |||||| |||||| ||||||||| |
|
|
| T |
24291167 |
ctctataaatagaagaggtcattgaaggttaagagcaagagttttaaaatacaaaagcaattatctctc |
24291099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 20885246 - 20884902
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaaggcttgatcacagctcatcaccaactaagcaagcacgtgctctaca |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20885246 |
gacatcatcaagatgaccttagcaaacatcatcaagtgggcagcaagttacaaaggtttgatcacacctcatcaccaactaagcaagcacgtgctctaca |
20885147 |
T |
|
| Q |
120 |
attttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaa |
219 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20885146 |
attt-cgttcaagttttggttgggactgagagaatgttctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaaa |
20885049 |
T |
|
| Q |
220 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20885048 |
attcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggggttcagctctataaatagaagaggacattgaaggagaaatgcaaga |
20884949 |
T |
|
| Q |
320 |
gtttgaaatacaaagcatttatctctctc-aaagcaaaagctatcaa |
365 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20884948 |
gtttgaaatagaaagcatttatctctctcaaaagcaaaagctatcaa |
20884902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 35876915 - 35877229
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
35876915 |
gacatcatcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacagctcatcacctacta-gcaagcacgtgctctac |
35877013 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35877014 |
aattta-gttcaagttttggttggaactgagagaatgatctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaa |
35877111 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
35877112 |
aattcaaattcaaattggaagcacaacagctctttattggcttgctctccaagggattcagctctataaatagaagagaacattgaaggagaaatgcaag |
35877211 |
T |
|
| Q |
319 |
agtttgaaatacaaagca |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35877212 |
agtttgaaatacaaagca |
35877229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 35884404 - 35884718
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
35884404 |
gacatcatcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacagctcatcacctacta-gcaagcacgtgctctac |
35884502 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35884503 |
aattta-gttcaagttttggttggaactgagagaatgatctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaa |
35884600 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
35884601 |
aattcaaattcaaattggaagcacaacagctctttattggcttgctctccaagggattcagctctataaatagaagagaacattgaaggagaaatgcaag |
35884700 |
T |
|
| Q |
319 |
agtttgaaatacaaagca |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35884701 |
agtttgaaatacaaagca |
35884718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 36724117 - 36724431
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
36724117 |
gacatcatcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacagctcatcacctacta-gcaagcacgtgctctac |
36724215 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36724216 |
aattta-gttcaagttttggttggaactgagagaatgatctgggcgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaa |
36724313 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
36724314 |
aattcaaattcaaattggaagcacaacagctctttattggcttgctctccaagggattcagctctataaatagaagagaacattgaaggagaaatgcaag |
36724413 |
T |
|
| Q |
319 |
agtttgaaatacaaagca |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36724414 |
agtttgaaatacaaagca |
36724431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 3396403 - 3396589
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttac-caaggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| || || |||||||||||||||||| |
|
|
| T |
3396403 |
gacatcatcaagatgacatcagcaaaaatcatcaagggggcagcaagttacaaaaggcttgatcacaactcatcatcagct-agcaagcacgtgctctac |
3396501 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctcttt |
209 |
Q |
| |
|
|| ||||||||||| ||| ||||| |||||||||||| ||| ||| ||||||||| ||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
3396502 |
aa-tttcgttcaag-tttagttgggactgagagaatgttct-ggcaaaactgaagaaacattctctacatggtttcttcccaattctcttt |
3396589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 3396590 - 3396655
Alignment:
| Q |
306 |
ggagaaaagcaagagtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
3396590 |
ggagaaatgcaagagtttgaaatacaaagcattta--tctctcaaagcaaaagctgtc-aatctcttca |
3396655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 374
Target Start/End: Original strand, 142571 - 142901
Alignment:
| Q |
40 |
agcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattttcgttcaagttttgg |
138 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
142571 |
agcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacagctcatcaccaacta-gcaagcatgtgctctacaattt-cgttcaagttt-gg |
142667 |
T |
|
| Q |
139 |
ttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaaattcaaattcaaattggaa |
238 |
Q |
| |
|
|||| |||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
142668 |
ttggcactgagagaatgttctaggtgaaactgaagaaacattctctacatgctttctccccaagtctcttt-ggagccaaaattcaaattcaaattggaa |
142766 |
T |
|
| Q |
239 |
gcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatt |
338 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
142767 |
gcacaacaactcttttttagctcgctctccaagggattcaactctataaatagaagaggacattgaaggagaaatgcaagagtttgaaatacaaagcatt |
142866 |
T |
|
| Q |
339 |
tatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| |
|
|
| T |
142867 |
tatctctctcaaagaaaaagctatc-aatctcttca |
142901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 1496 - 1841
Alignment:
| Q |
25 |
catcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattt |
123 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||| || |||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1496 |
catcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttggtcacatctcatcaccaacta-gcaagcacgtgctctacaattt |
1594 |
T |
|
| Q |
124 |
tcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaaattc |
223 |
Q |
| |
|
||||||||||| |||||| ||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
1595 |
-cgttcaagttt-ggttgggactaaaagaatgttctgggcgaaactgaagaaacattctctacatgctttctccccaactctcttt-ggagccaaaattc |
1691 |
T |
|
| Q |
224 |
aaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaagagttt |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1692 |
aaattcaaattggaaggacaacagctcttttttagcttgctctccaagggattcaactctataaatagaagaggacattgaaggagaaatgcaagagttt |
1791 |
T |
|
| Q |
324 |
gaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1792 |
gaaataaataacatttatctctctcaaagcaaaagctatc-aatctcttca |
1841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 46306372 - 46306028
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
46306372 |
gacatcatcaagatgacttcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacaactcatcaccaacta-gcaagcacgtgctctac |
46306274 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
46306273 |
aattt-cgttcaagttt-ggttggaactgagagaatgttctgggcaaaactgaagaaatattctctacatgctttcttcccaagtctcttt-ggagcca- |
46306178 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46306177 |
-----aaattcaaattggaagcacaacagctcttttttagcttgctttccaagggaatcagctctataaatagaagaggacattgaaggagaaaagcaac |
46306083 |
T |
|
| Q |
319 |
agtttgaaatacaaagcatttatctctctcaaagcaaaagctatcaaatctcttca |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
46306082 |
agtttgaaatacaaagcatttatctctctcaaagcaaaaacta-ccaatctcttca |
46306028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 40 - 365
Target Start/End: Original strand, 5385092 - 5385414
Alignment:
| Q |
40 |
agcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattttcgttcaagttttgg |
138 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
5385092 |
agcaaatatcatcaagtgggtagcaagttacaaaaggcttgatcacagctcatcaccaacta-gcaagcacgtgctttacaattt-cgttcaagttt-gg |
5385188 |
T |
|
| Q |
139 |
ttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaaaattcaaattcaaattggaa |
238 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||| |||||| || ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
5385189 |
ttgggactgagagaatgttctgggcaaaactgaagaaacattttcaacatgctttcttcccaagtctcttt-ggagccaaaattctaattcaaattggaa |
5385287 |
T |
|
| Q |
239 |
gcacaacagctctttattagcttgctctccaaggaattcaactctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatt |
338 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5385288 |
gcacaacagctcttttttagcgtgctttccaagggattcagctctataaatagaagaagacattgaaggagaaaagcaagagtttgaaatacaaagtatt |
5385387 |
T |
|
| Q |
339 |
tatctctctcaaagcaaaagctatcaa |
365 |
Q |
| |
|
|||||||||||||| |||| ||||||| |
|
|
| T |
5385388 |
tatctctctcaaagtaaaaactatcaa |
5385414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 13329127 - 13328826
Alignment:
| Q |
20 |
gacatcatcaagatgatctaagcaaacatcatcaagtgggcagcaagttaccaa-ggcttgatcacagctcatcaccaactaagcaagcacgtgctctac |
118 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
13329127 |
gacatcatcaagatgatatcagcaaaaatcatcaagtgggcagcaagttacaaaaggcttgatcacagctcatcaccaacta-gcaagcacatgatctac |
13329029 |
T |
|
| Q |
119 |
aattttcgttcaagttttggttggaactgagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctctttaggagccaa |
218 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
13329028 |
aattt-cgttcaagttt-ggttgtgactgagagaatgttctgggcaaaactgaagaaacattctctacatgctttcttcccaagtctcctt-ggagccaa |
13328932 |
T |
|
| Q |
219 |
aattcaaattcaaattggaagcacaacagctctttattagcttgctctccaaggaatt-caactctataaatagaagaggacattgaaggagaaaagcaa |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| | || |||| ||| || |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13328931 |
aattcgaattcaaattggaagcacaacagctcttttttagcttgatttctaagggattccagctctataaatagaagaggtcattgaaggagaaaagcaa |
13328832 |
T |
|
| Q |
318 |
gagttt |
323 |
Q |
| |
|
|||||| |
|
|
| T |
13328831 |
gagttt |
13328826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 13952938 - 13952780
Alignment:
| Q |
48 |
tcatcaagtgggcagcaagttac-caaggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattttcgttcaagttttggttggaact |
146 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||||||||||| | ||| |||||| || |||||||||||| |||||||| || |||| | ||| |
|
|
| T |
13952938 |
tcatcaagtaggcagcaaaatactcaaggcttgatcacagctcatcacaagcta-gcaagcgcgcgctctacaattt-cgttcaagatt-ggttaggact |
13952842 |
T |
|
| Q |
147 |
gagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctcttt |
209 |
Q |
| |
|
|||||||| ||| ||| | ||||||| || |||||||||||| |||||| |||||||||||| |
|
|
| T |
13952841 |
aagagaatgttctaggc-agactgaagaaatattctctacatggtttctctccaagtctcttt |
13952780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 5078 - 4920
Alignment:
| Q |
48 |
tcatcaagtgggcagcaagttac-caaggcttgatcacagctcatcaccaactaagcaagcacgtgctctacaattttcgttcaagttttggttggaact |
146 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||||||||||| | ||| |||||| || |||||||||||| |||||||| || |||| | ||| |
|
|
| T |
5078 |
tcatcaagtaggcagcaaaatactcaaggcttgatcacagctcatcacaagcta-gcaagcgcgcgctctacaattt-cgttcaagatt-ggttaggact |
4982 |
T |
|
| Q |
147 |
gagagaatgatctgggcgaaactgaaggaacattctctacatgctttctccccaagtctcttt |
209 |
Q |
| |
|
|||||||| ||| ||| | ||||||| || |||||||||||| |||||| |||||||||||| |
|
|
| T |
4981 |
aagagaatgttctaggc-agactgaagaaatattctctacatggtttctctccaagtctcttt |
4920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 12988 - 12893
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaa-gcatttatctctctcaaagcaa--aagctatcaaatctcttca |
374 |
Q |
| |
|
|||||||||||| || |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
12988 |
tctataaatagaggaagacaaataaggcgaaaaccaagagtttgaaatacaaaagcatttatctctctcaaagcaaacaagctatc-aatctcttca |
12893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 256644 - 256712
Alignment:
| Q |
280 |
ctctataaatagaagaggacattgaaggagaaaagcaagag-tttgaaatac-aaagcatttatctctc |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
256644 |
ctctataaatagaagaggtcattgaaggttaaaagcaagagttttgaaatacaaaagcaattatctctc |
256712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 2707 - 2639
Alignment:
| Q |
281 |
tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatac-aaagcatttatctctctc |
348 |
Q |
| |
|
|||||||||||| || ||||| |||| |||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
2707 |
tctataaatagaggaagacatccaaggctaaaatcaagagtttgaaatacaaaagcatttatctctctc |
2639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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