View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762-Insertion-2 (Length: 671)
Name: NF0762-Insertion-2
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 138 - 582
Target Start/End: Complemental strand, 7646081 - 7645640
Alignment:
| Q |
138 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtctcattcctttggagaagggtatgctacgaggtctgatgaagaaggatttggaggga |
237 |
Q |
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| T |
7646081 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtctcattcctttggagaagggtatgctacaaggtctgatgaagaaggatttggaggga |
7645982 |
T |
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| Q |
238 |
tatatagtggaaaccaatcccttcagaaagataagtccgtccatgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaacta |
337 |
Q |
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| T |
7645981 |
tatatggtggaaaccaatcccttcagaaagataagtccgtccatgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaacta |
7645882 |
T |
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| Q |
338 |
gnnnnnnnccttacgtttaaaacattttacaccgtcaatttcttattacttttgtagaggtcatgatggaaattaattattaagcctaattcagacttgt |
437 |
Q |
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| T |
7645881 |
gtttttttccttacgtttaaaacattttacaccgtcattttcttattacttttgtagaggtc---atggaaattaattattaagcctaattaagacttgt |
7645785 |
T |
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| Q |
438 |
ttgtttttgtgcatgaagattatgacaagacacagggaagcgaggtgaaagagaaggaaaaagctaggcaccagagcagcgcaaatgcttaggtttttct |
537 |
Q |
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| T |
7645784 |
ttgtttttgtgcatgaagattatgacaagacacagggaagcgaggtgaaagagaaggaaaaagctaggcaccagagcagcgccaatgcttaggtttttct |
7645685 |
T |
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| Q |
538 |
tgtgtgtagtggtttatgcaataaacacatgtatttgcagttaga |
582 |
Q |
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| T |
7645684 |
tgtgtgtagtggtttatgcaataaacacatgtatttgcagttaga |
7645640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 671
Target Start/End: Complemental strand, 7645583 - 7645551
Alignment:
| Q |
639 |
ctcagagtgataatatggacaattatgtataag |
671 |
Q |
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| T |
7645583 |
ctcagagtgataatatggacaattatgtataag |
7645551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 7646210 - 7646166
Alignment:
| Q |
7 |
ataaattaacaatgaaaacttagaggac-aaacaaaattaaatat |
50 |
Q |
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| T |
7646210 |
ataaattaacaatgaaaacttagaggacaaaaaaaaattaaatat |
7646166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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