View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0762-Insertion-3 (Length: 655)

Name: NF0762-Insertion-3
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0762-Insertion-3
NF0762-Insertion-3
[»] chr5 (1 HSPs)
chr5 (8-655)||(16896887-16897545)


Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 8 - 655
Target Start/End: Original strand, 16896887 - 16897545
Alignment:
Q  8 aaattaaatttccaaaatttgaaaattggtgttttctgtgcactggaaattgttactctcatggaacnnnnnnnnnnnnnnn---gaagaaagaactaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||    
T  16896887 aaattaaatttccaaaatttgaaaattggtgttttctgtgcactggaaattgttactctcatggaacttttttttttttttttttgaagaaagaactaat 16896986  T
Q  105 ctttaaatgctgaccttttaacaaaacattatatttacgattggaattttgcaagtgaatctatgatttaaatggtgcgaaaggagagagtgaaaattaa 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  16896987 ctttaaatgccgaccttttaacaaaacattatatttacgattggaattttgcaagtgaatctacgatttaaatggtgcgaaagaagagagtgaaaattaa 16897086  T
Q  205 caaa-tgcctcctcaaaaccgcaactcaagtgaatctcagaaaaatatgcattatgctttgcaacatcatgtcattgagtatatcttatctagagctgaa 303  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||     |||||||||    
T  16897087 caaaatgcctcctcaaaaccgcaactcaagtaaatctcagaaaaatatgcaatatgctttgcaacatcatgtcattgagtatatct-----agagctgaa 16897181  T
Q  304 aacataaatttccattccaatttcaacataaaaataagcttaacaactatagtcatatta------------agagactaattgatatttgttctcacca 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| ||||||||||    
T  16897182 aacataaatttccattccaatttcaacataaaaataagcttaacaactatagtcatattattacacgctgaaagagactaattgatattcgttctcacca 16897281  T
Q  392 acatacctgagtctgtggactcatctgatctaccaatagctctgatataaaaattcttggcaacggaccattcatgccgctgccactgccagaaaatgaa 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  16897282 acatacctgagtctgtggactcatctgatctaccaatagctctgatataaaaattcttggcaagggaccattcatgccactgccactgccagaaaatgaa 16897381  T
Q  492 tcagcaggaggtgagaaccacaatgcccttaattttttccctggaaatctcagctcctctcgttgtgtatagccataatccaggaaaaaaccagccatgg 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  16897382 tcagcaggaggtgagaaccacaatgcccttaattttttccctggaaatctcagctcctctcgttgtgtatagccataatccagaaaaaacccagccatgg 16897481  T
Q  592 agtcaattccataaccattcacctataatcaagtgcacgaggcacaataactgagctaacagag 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16897482 agtcaattccataaccattcacctataatcaagtgcacgaggcacaataactgagctaacagag 16897545  T

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