View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762-Insertion-4 (Length: 646)
Name: NF0762-Insertion-4
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 8 - 646
Target Start/End: Complemental strand, 39675457 - 39674815
Alignment:
| Q |
8 |
aataagtggaaaattaaggatttatacctcgacttctgcatatataatgtgatgttcatatcgactgagttaagttcaagagaaaatcaatatgcctatt |
107 |
Q |
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| T |
39675457 |
aataagcggaaaattgaggatttatatcccgaattctgcatatataatgtgatgtttataccgactgagttaagttcaagagaaaatcaatatgcctatt |
39675358 |
T |
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| Q |
108 |
ttatttgacggaaagcaaaatcataccaactagcttcatttattttggatatctttaaattttagggtcaattacattaacctcccttgaggtttatcta |
207 |
Q |
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| T |
39675357 |
ttatttgacggaaagcaaaatcataccaactagcttcatttattttggatatctttaaattttagggtaaattacattaaactcccttgaggtttatcta |
39675258 |
T |
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| Q |
208 |
attacatcccacctcccctctattttctcactcaacaataagannnnnnnntgctgttatctccatccattctccg--------------------ttaa |
287 |
Q |
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| T |
39675257 |
attacatcccacctcccctctattttctcactcaacaaaaaga-ccccccctgctgttatctccatccattctccgttaaaacaattttcaatcaattaa |
39675159 |
T |
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| Q |
288 |
agacaatgaatactgatctttcactcttaagatttacatgttatctactgctaaaattgatccatttgcaattggcaaagttctcaccatccacttttta |
387 |
Q |
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| T |
39675158 |
agacaatgaaaactcttctttcactcttaagatttacatgttatctactgctaaaattgatccatttgcaattggcaaagttctcaccatccacttttta |
39675059 |
T |
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| Q |
388 |
acgataataaaacagagaaatcaatataaatgcccattttttccaggataaaacttgaaatcaaataacttgaaatcaagatgtagaactagaatcatga |
487 |
Q |
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| T |
39675058 |
acgataataaaacagagaaataaatataaatgcccattttttccaggataa---------------aacttgaaatcaagatgtagaactagaatcatga |
39674974 |
T |
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| Q |
488 |
aacgattgaaataaaaaagcaaaataaggaatatgtgactctgtaatcacgtgcccaaatgggtggagaagaaacaagatgtagaatcattacaaaggat |
587 |
Q |
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| T |
39674973 |
aacgattgaaataaaaaagcaaaataaggaatatgtgactctgtaatcacgtgcccaaatgggtggagaagaaacaagatgtagaatcattacaaaggat |
39674874 |
T |
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| Q |
588 |
agagactctattcttctaaattggttccttattgttacaacctatgaagccccgatacc |
646 |
Q |
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| T |
39674873 |
agagactctattcttctaaattggctccttacttttacaacctatgaagccccgatacc |
39674815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 52283050 - 52282990
Alignment:
| Q |
177 |
aattacattaacctcccttgaggtttatctaattacatcccacctcccctctattttctca |
237 |
Q |
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| T |
52283050 |
aattacacaaacctcccctgaggtttatgtaaatacatccaacctcccgtctattttctca |
52282990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 50983648 - 50983716
Alignment:
| Q |
163 |
taaattttagggtcaattacattaacctcccttgaggtttatctaattacatcccacctcccctctatt |
231 |
Q |
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| T |
50983648 |
taaattttagggtaatttacactaacctaccctgaggtttatgttaatatatctcacctcccctctatt |
50983716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 24551280 - 24551340
Alignment:
| Q |
177 |
aattacattaacctcccttgaggtttatctaattacatcccacctcccctctattttctca |
237 |
Q |
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| T |
24551280 |
aattacacaaacctcccctgaggtttatgtaaatatatccaacctcccctctgttttctca |
24551340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 2444263 - 2444195
Alignment:
| Q |
177 |
aattacattaacctcccttgaggtttatctaattacatcccacctcccctctattttctcactcaacaa |
245 |
Q |
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| T |
2444263 |
aattacattaacctcccctgaggtttatgttaatataccctacctcccctctatttattcacttaacaa |
2444195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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