View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762-Insertion-5 (Length: 630)
Name: NF0762-Insertion-5
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 44682303 - 44682606
Alignment:
| Q |
8 |
gatctgatgtaggtatacatgttaattagctaatatgttagccttattgtcannnnnnnattttatggatatcttattaaactaatgtgcttctagtaaa |
107 |
Q |
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| T |
44682303 |
gatctgatgtaggtatacatgttaattagctaatatgttagccttattgtcattttttttttttatggatatcttattaatctaatgtgcttctagtaaa |
44682402 |
T |
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| Q |
108 |
ttagttaaaagttactccaatttatcttgaagttaccttttttgttttgtttctatagtcaattttggttataaatatgtagagagaaattgtttacacc |
207 |
Q |
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| T |
44682403 |
ttagttaaaagttactccaatttatcttgaagttaccttttttgttttgtttctatagtcaattttggttataaatatgtagagagaaattgtttacacc |
44682502 |
T |
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| Q |
208 |
caagatcacttcataaatatatattcagaaaaagtatataatttttgtgtcctccaaaagtacatttatggacaaattttatcataaaaaagtgtacttt |
307 |
Q |
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| T |
44682503 |
caagatcacttcataaatatatattcagaaaaagtatataatttttgtgtcctccaaaagtacatttatggacaaattttatcataaaaaagtgtacttt |
44682602 |
T |
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| Q |
308 |
aaca |
311 |
Q |
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|||| |
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| T |
44682603 |
aaca |
44682606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 368 - 630
Target Start/End: Original strand, 44682606 - 44682868
Alignment:
| Q |
368 |
ataagtagaaaaatttaatgaatttaaacgtattgagatgatttaatcaagtcttcacttgatgataatatacaagcaaggcacgagaaattgtacctac |
467 |
Q |
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| T |
44682606 |
ataagtagaaaaatttaatgaatttaaacgtattgagatgatttaatcaagtcttcacttgatgataatatacaagtaaggcacgagaaattgtacctac |
44682705 |
T |
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| Q |
468 |
tatttcatttttcaaattgacatccttattttattgcaaaaacatagtgaaattatgtgtttaataatgtaaatgttgatgcatttaacttgtccaagat |
567 |
Q |
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| T |
44682706 |
tatttcatttttcaaattgacatccttattttattgcaaaaacataatgacattatgtgtttaataatgtaaatgttgatgcatttaacttgtccaagat |
44682805 |
T |
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| Q |
568 |
gaggcagagtttgggcaaagaacgcagcagttgtgtccgtaataataaagtggggtccggggg |
630 |
Q |
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| T |
44682806 |
gaggcagagtttgggcaaagaacgcagcagttgtgtccgtaataataaagtggggtccggggg |
44682868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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