View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762-Insertion-6 (Length: 578)
Name: NF0762-Insertion-6
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 6 - 578
Target Start/End: Complemental strand, 10463320 - 10462748
Alignment:
| Q |
6 |
cacacttgacacaccaataactttgctttcaaacagaaaaatagaataatcgctatgctgtcaattttgcttctcgtcatggtacttgccgcttacctaa |
105 |
Q |
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| T |
10463320 |
cacacttgacacaccaataactttgctttcaaacagaaaaatagaataattgctatgctgtcaattttgcttctcgtcatggtacttgccgcttacctaa |
10463221 |
T |
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| Q |
106 |
ccttacggatcaagttgaacatttgcatcttgcttttagatgatttaaagagtataaactaaaagtaatgattgtcttgttttgcttactaattgttnnn |
205 |
Q |
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| T |
10463220 |
ccttacggatcaagttgaacatttgcatcttgcttttagatgatttaaagagtataaactaaaagtaatgattgtcttgttttgcttactaattgttaaa |
10463121 |
T |
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| Q |
206 |
nnnntaataaaaacgattgtcctgatgctatggatttaaatactacgttttcattgtttatgtgctgtgcatgtgagtcacatgcttcatcttaatcttc |
305 |
Q |
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| T |
10463120 |
aaaataataaaaacgattgtcctgatgctatggatttaaatactacgttttcattgtttatgtgctgtgcatgtgagtcacatgcttcatcttaatcttc |
10463021 |
T |
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| Q |
306 |
tgctggcaatagaatttgcggtatatcttgttttttgatgaagtagcttaaataaatttatcaagctataataactaattcaacattgtggctaaacaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10463020 |
tgctggcaatagaatttgcggtatatcttgttttttgatgaagtagcttaaataaatttatcaagctataataactaattcaacattgtggctaaacaaa |
10462921 |
T |
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| Q |
406 |
ttctctgtataccatctgtgagatggaagtttcttgtttaagtcctactagtgcgctcattataaattgaattcaatcaatcttcctacattttttccaa |
505 |
Q |
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| T |
10462920 |
ttctctgtataccatctgtgagatggaagtttcttgtttaagtcctactagtgcgctcattataaattgaattcaatcaatcttcctacattttttccaa |
10462821 |
T |
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| Q |
506 |
atctgagttaattatcagttgaatttcatgatgaatttttaacaattgggtacaattccataacatttgtata |
578 |
Q |
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| T |
10462820 |
atctgagttaattatcagttgaatttcatgatgaatttttaacaattgggtacaattccataacatttgtata |
10462748 |
T |
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