View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762-Insertion-7 (Length: 483)
Name: NF0762-Insertion-7
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 7500558 - 7500243
Alignment:
| Q |
8 |
cagaaaacagagattacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaat |
107 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500558 |
cagaaaacagagattacatagcataacaaaaagattgaaggttgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaat |
7500459 |
T |
|
| Q |
108 |
acagctacattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500458 |
acagctacattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaaca |
7500359 |
T |
|
| Q |
208 |
acttattattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500358 |
acttattattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttca |
7500259 |
T |
|
| Q |
308 |
tagctactccaaccgc |
323 |
Q |
| |
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|||||||||||||||| |
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| T |
7500258 |
tagctactccaaccgc |
7500243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 15171776 - 15171463
Alignment:
| Q |
8 |
cagaaaacagagattacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaat |
107 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
15171776 |
cagaaaacagagattacatagcataacaaaa-gattgaggattgaaggtttttattgaaatacac--gagtgcctaacagtagttcttattctaatcaat |
15171680 |
T |
|
| Q |
108 |
acagctacattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacat-agatagaaacatatgcataaaaaac |
206 |
Q |
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||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| | |||| | ||||||||||||||||||||| ||| |
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| T |
15171679 |
acagcctcatcagtgctaagcaaacttcctgaaacataaaccttcaacttctgtgccaaacaagcatgaaaccttagatagaaacatatgcataaataac |
15171580 |
T |
|
| Q |
207 |
aacttattattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttc |
306 |
Q |
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| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |
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| T |
15171579 |
agcttattattttaatacacaacatataagtagtgaaccctcttgaaagttaagacacaaatcacacactcctacgcatcttcagaactcttcttccatc |
15171480 |
T |
|
| Q |
307 |
atagctactccaaccgc |
323 |
Q |
| |
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| ||||||||||||||| |
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| T |
15171479 |
aaagctactccaaccgc |
15171463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 413 - 483
Target Start/End: Complemental strand, 7500153 - 7500083
Alignment:
| Q |
413 |
gtgtctcccctctttggttgcctccatcctcctcctgcctcgctctcggtctcaccctcttcttcgcgccc |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7500153 |
gtgtctcccctctttggttgcctccatcctcctcctgtctcgctctcggtctcaccctcttcttcgcgccc |
7500083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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