View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0762-Insertion-9 (Length: 344)

Name: NF0762-Insertion-9
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0762-Insertion-9
NF0762-Insertion-9
[»] chr7 (1 HSPs)
chr7 (7-344)||(40095118-40095451)
[»] chr5 (1 HSPs)
chr5 (54-141)||(13986732-13986820)
[»] chr4 (1 HSPs)
chr4 (39-79)||(23343301-23343341)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 40095451 - 40095118
Alignment:
Q  7 atctagtacctcgactcaagctcacaatatgttaatagggagtgttgagagtttgtcaatcaagaaacaaaaataaagtttaaaagaatgcttctttatg 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||    |||||||||||||||||||||||    
T  40095451 atctagtacctcgactcaagctcacaatgtgttaatagggagtgtcgagagtttgtcaatcaaaaaaaaaaaa----gtttaaaagaatgcttctttatg 40095356  T
Q  107 aataaatcatcaatttataaggtggaatagacaaattgtaatgttattgtttctggatgaagatgatgacgagtgaagtgataatcaatctaaatatgtt 206  Q
    |||||||||||||| || || | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40095355 aataaatcatcaatctacaaagcggaatagacaaattgtactgttattgtttctggatgaagatgatgacgagtgaagtgataatcaatctaaatatgtt 40095256  T
Q  207 tgttgcattcatgaaggcccggagcaatttgagtaacaatcttgttgtcgcagtgcatcggagttggttcaaaaagagagacactctacaagataatatc 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40095255 tgttgcattcatgaaggcccgaagcaatttgagtaacaatcttgttgtcgcagtgcatcagagttggttcaaaaagagagacactctacaagataatatc 40095156  T
Q  307 caacacaatcaaattattccaatagtagtggatatcat 344  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  40095155 caacacagtcaaattattccaatagtagtggatgtcat 40095118  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 13986820 - 13986732
Alignment:
Q  54 agagtttgtcaatcaagaaacaaaaataaa-gtttaaaagaatgcttctttatgaataaatcatcaatttataaggtggaatagacaaa 141  Q
    ||||||||||||||| |||||||||| |   |||||| ||||||||||||  ||||||||||| |||| |  |||| |||| |||||||    
T  13986820 agagtttgtcaatcatgaaacaaaaacattcgtttaacagaatgcttcttagtgaataaatcaacaatctgcaaggaggaagagacaaa 13986732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 23343341 - 23343301
Alignment:
Q  39 taatagggagtgttgagagtttgtcaatcaagaaacaaaaa 79  Q
    ||||||| ||| ||| |||||||||||||||||||||||||    
T  23343341 taataggaagtattgggagtttgtcaatcaagaaacaaaaa 23343301  T

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