View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762_high_1 (Length: 445)
Name: NF0762_high_1
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 445
Target Start/End: Complemental strand, 40985472 - 40985056
Alignment:
| Q |
20 |
agagaagaaagtggacatatatagtttattgaattcatggctgttcaagctcaatatccatccaatattcttcttcttcttaacaacaataacaataaca |
119 |
Q |
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| T |
40985472 |
agagaagaaagtggacata----gtttattgaattgatggctgttcaagctcaatatccatccaatattcttcttcttcttaacaacaataaca------ |
40985383 |
T |
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| Q |
120 |
ggttctttcacatttctctttgtaatgtaatcatgtacc-tcggcctcaaatacaattctatatgaatctctttt-cttattgtaattgtaacagcagaa |
217 |
Q |
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| T |
40985382 |
ggttctttcacatttctctttgtaatctaatcatgtaccctcggcctcaaatacaattctatatgaatctctttttcttattgtaattgtaacagcagaa |
40985283 |
T |
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| Q |
218 |
atggacaagaaggacaacaaccatcaggagcattaggactatcacttcttgatcaaactcatcattctcataatatcctatgcaacaacacaagtatgtt |
317 |
Q |
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| T |
40985282 |
atggacaagaaggacaacaaccatcaggagcattaggactatcacttcttgatcaaactcatcattctcataatatcctatgcaacaacacaagtatgtt |
40985183 |
T |
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| Q |
318 |
tgtttgtttctttgtttcacaattaaaaacatacatctct--tt------tcattc-ttcttgatgtctcaactcaccgcaggtaccaattctcgcaaga |
408 |
Q |
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| T |
40985182 |
tgt-------tttgtttcacaattaaaaacatacatctctccttcacaaataattcattcatcatgtctcaactcatcgcaggtaccaattctcgcaaga |
40985090 |
T |
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| Q |
409 |
gagtaagagaagaaggaacatcacataacgttattaa |
445 |
Q |
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| T |
40985089 |
gagtaag---agaaggaacatcccctaacgttattaa |
40985056 |
T |
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