View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0762_low_1 (Length: 462)

Name: NF0762_low_1
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0762_low_1
NF0762_low_1
[»] chr6 (9 HSPs)
chr6 (16-433)||(10102904-10103323)
chr6 (318-399)||(10095711-10095791)
chr6 (67-131)||(10089795-10089859)
chr6 (82-204)||(10101560-10101678)
chr6 (318-399)||(10079043-10079123)
chr6 (318-381)||(10085975-10086037)
chr6 (327-396)||(10076591-10076659)
chr6 (319-389)||(18344822-18344892)
chr6 (319-352)||(16015155-16015188)
[»] chr5 (4 HSPs)
chr5 (319-389)||(8427488-8427558)
chr5 (319-389)||(37374180-37374250)
chr5 (319-381)||(14190901-14190963)
chr5 (319-389)||(27882330-27882400)
[»] scaffold0090 (1 HSPs)
scaffold0090 (319-389)||(47863-47933)
[»] chr8 (5 HSPs)
chr8 (319-389)||(7823077-7823147)
chr8 (319-389)||(25217468-25217538)
chr8 (319-389)||(30326712-30326782)
chr8 (319-389)||(25207949-25208020)
chr8 (319-389)||(33861215-33861285)
[»] chr7 (5 HSPs)
chr7 (319-389)||(12780051-12780121)
chr7 (319-389)||(12784905-12784975)
chr7 (319-389)||(9000047-9000117)
chr7 (319-389)||(45122208-45122278)
chr7 (319-389)||(7037966-7038036)
[»] chr4 (6 HSPs)
chr4 (319-389)||(13345182-13345252)
chr4 (319-389)||(35857153-35857223)
chr4 (319-389)||(49785755-49785825)
chr4 (319-389)||(617673-617743)
chr4 (319-389)||(31921783-31921853)
chr4 (319-352)||(49711417-49711450)
[»] chr3 (4 HSPs)
chr3 (319-389)||(34019-34089)
chr3 (319-389)||(52919273-52919343)
chr3 (319-389)||(41763197-41763267)
chr3 (319-352)||(10967722-10967755)
[»] chr2 (6 HSPs)
chr2 (319-389)||(28665099-28665169)
chr2 (319-389)||(37823933-37824003)
chr2 (319-381)||(35611711-35611773)
chr2 (319-389)||(41919100-41919170)
chr2 (319-389)||(27194537-27194607)
chr2 (319-389)||(27844351-27844421)
[»] scaffold0499 (1 HSPs)
scaffold0499 (319-389)||(10439-10509)
[»] chr1 (2 HSPs)
chr1 (319-389)||(6309897-6309967)
chr1 (319-389)||(48234075-48234146)
[»] scaffold0356 (1 HSPs)
scaffold0356 (319-389)||(15129-15199)
[»] scaffold0073 (1 HSPs)
scaffold0073 (319-389)||(997-1067)
[»] scaffold0107 (1 HSPs)
scaffold0107 (319-352)||(43222-43255)


Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 10102904 - 10103323
Alignment:
Q  16 atcgcaaaaggctatgtccaaatgaaagagttttgacagcattattgtgtccatttcttttttagtaactaaacaaaaatggagaagcttctgaaatgtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10102904 atcgcaaaaggctatgtccaaatgaaagagttttgacagcattattgtgtccatttcttttttagtaactaaacaaaaatggagaagcttctgaaatgtt 10103003  T
Q  116 aaatcaaaaccaaataggatcccttgtataaatgaaaattccaaaagatatacaacataaaagaggaataatgcagaaatgtcattgcaattatatgtct 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103004 aaatcaaaaccaaataggatcccttatataaatgaaaattccaaaagatatacaacataaaagaggaataatgcagaaatgtcattgcaattatatgtct 10103103  T
Q  216 ggcaataatc----nnnnnnnnnnnnnncattgcacaaaaggcagaatatattgtagatgactacttaactcgttttagtggaaagatttagatataata 311  Q
    ||||||||||                  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103104 ggcaataatctttttcttttttttttttcattgcacaaaaggcagaat-tattgtagatgactacttaactcgttttagtggaaagatttagatataata 10103202  T
Q  312 taattctaaaagcttctttcaacttaactcaaactaaaaaatcagcttatttagtgaaggatttcccaagtcattattgcataggctatgtgtgatctta 411  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103203 taattctaaaagcttctttcaacttaactc-aactaaaaaatcagcttatttagtgaaggatttcccaagtcattattgcataggctatgtgtgatctta 10103301  T
Q  412 tccaaatgtcatgaatggaaac 433  Q
    ||||||||||||||||||||||    
T  10103302 tccaaatgtcatgaatggaaac 10103323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 10095711 - 10095791
Alignment:
Q  318 taaaagcttctttcaacttaactcaaactaaaaaatcagcttatttagtgaaggatttcccaagtcattattgcataggcta 399  Q
    ||||||||||||||| ||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||    
T  10095711 taaaagcttctttcagcttaattcaaactaataaatgaacttattt-gtgaaggatttcccaagtcattattgcataggcta 10095791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 10089795 - 10089859
Alignment:
Q  67 catttcttttttagtaactaaacaaaaatggagaagcttctgaaatgttaaatcaaaaccaaata 131  Q
    ||||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10089795 catttcttttccagcaactaaacaaaaatggagaagcttctgaaattttaaatcaaaaccaaata 10089859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 10101560 - 10101678
Alignment:
Q  82 aactaaacaaaaatggagaagcttctgaaatgttaaatcaaaaccaaataggatcccttgtataaatgaaaattccaaaagatatacaacataaaagagg 181  Q
    ||||||||||| |||||  ||||| |||||| |||||||||||||||||| |||| |||||||| | |||| ||| ||||||| || | |||  ||||||    
T  10101560 aactaaacaaacatgga--agcttatgaaattttaaatcaaaaccaaatatgatcacttgtatacaagaaagttcaaaaagatttagatcat--aagagg 10101655  T
Q  182 aataatgcagaaatgtcattgca 204  Q
    ||||||||| |||||||||||||    
T  10101656 aataatgcacaaatgtcattgca 10101678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 10079043 - 10079123
Alignment:
Q  318 taaaagcttctttcaacttaactcaaactaaaaaatcagcttatttagtgaaggatttcccaagtcattattgcataggcta 399  Q
    |||||||||||||||  |||| ||||||||| |||| | ||||||| ||||||||||| |||||||||||||||||||||||    
T  10079043 taaaagcttctttcagtttaattcaaactaataaatgaacttattt-gtgaaggattttccaagtcattattgcataggcta 10079123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 10085975 - 10086037
Alignment:
Q  318 taaaagcttctttcaacttaactcaaactaaaaaatcagcttatttagtgaaggatttcccaag 381  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10085975 taaaagcttatttcagcttaactcaaactcaaaaatcagcttattta-tgaaggatttcccaag 10086037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 10076591 - 10076659
Alignment:
Q  327 ctttcaacttaactcaaactaaaaaatcagcttatttagtgaaggatttcccaagtcattattgcatagg 396  Q
    |||||| ||||| ||||||||| |||| |  |||||| ||||||||||||||||||||||||||||||||    
T  10076591 ctttcagcttaattcaaactaataaatgaagttattt-gtgaaggatttcccaagtcattattgcatagg 10076659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 18344822 - 18344892
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  18344822 aaaagtttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 18344892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 16015188 - 16015155
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaaaaaa 352  Q
    |||||||||||||| |||||||||||||||||||    
T  16015188 aaaagcttctttcagcttaactcaaactaaaaaa 16015155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 8427558 - 8427488
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||    
T  8427558 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagtcattatt 8427488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 37374180 - 37374250
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaaa-aaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||| || |||||||||||||| |||||||    
T  37374180 aaaagcttctttcagcttaactcaaactaaataaataagcttattt-gtaaaggatttcccaagccattatt 37374250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 14190963 - 14190901
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaag 381  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || ||||||||||||||    
T  14190963 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaag 14190901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 27882330 - 27882400
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  27882330 aaaagcttttttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 27882400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 47933 - 47863
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  47933 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 47863  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 7823077 - 7823147
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  7823077 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 7823147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 25217538 - 25217468
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  25217538 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 25217468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 30326712 - 30326782
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || ||||| |||||||| |||||||    
T  30326712 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggacttcccaagccattatt 30326782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 25208020 - 25207949
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa--aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| |||||||||||||||  ||||  ||||||||| || |||||||||||||| |||||||    
T  25208020 aaaagcttctttcagcttaactcaaactaaaaaaaaaaagcttattt-gtaaaggatttcccaagccattatt 25207949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 33861285 - 33861215
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||| |||||||| ||||||||||||||| ||||| |||||||||  | |||||||||||||| |||||||    
T  33861285 aaaagtttctttcagcttaactcaaactaaaaaaataagcttattt-ctaaaggatttcccaagacattatt 33861215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 12780121 - 12780051
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  12780121 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 12780051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 12784975 - 12784905
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  12784975 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 12784905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 9000117 - 9000047
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| ||| || |||||||||||||| |||||||    
T  9000117 aaaagcttctttcagcttaactcaaactaaaaaaataagcttgttt-gttaaggatttcccaagccattatt 9000047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 45122278 - 45122208
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| ||| || |||||||||||||| |||||||    
T  45122278 aaaagcttctttcagcttaactcaaactaaaaaaataagcttgttt-gttaaggatttcccaagccattatt 45122208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 7037966 - 7038036
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||| ||||| ||||||||||||| ||||||| || |||||| || |||||||||||||| |||||||    
T  7037966 aaaagcttatttcagcttaactcaaactaaaaaaataagtttattt-gtaaaggatttcccaagccattatt 7038036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 13345182 - 13345252
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  13345182 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 13345252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 35857153 - 35857223
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  35857153 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 35857223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 49785825 - 49785755
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  49785825 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 49785755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 617743 - 617673
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||| |||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  617743 aaaagtttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 617673  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 31921783 - 31921853
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||  | |||||||||||||| |||||||    
T  31921783 aaaagtttctttcagcttaactcaaactaaaaaaataagcttattt-ctaaaggatttcccaagacattatt 31921853  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 49711417 - 49711450
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaaaaaa 352  Q
    |||||||||||||| |||||||||||||||||||    
T  49711417 aaaagcttctttcagcttaactcaaactaaaaaa 49711450  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 34019 - 34089
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  34019 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 34089  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 52919273 - 52919343
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||    
T  52919273 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 52919343  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 41763267 - 41763197
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||| |||||||| ||||||||||||||| ||||| |||||||||  | |||||||||||||| |||||||    
T  41763267 aaaagtttctttcagcttaactcaaactaaaaaaataagcttattt-ctaaaggatttcccaagacattatt 41763197  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 10967755 - 10967722
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaaaaaa 352  Q
    |||||||||||||| |||||||||||||||||||    
T  10967755 aaaagcttctttcagcttaactcaaactaaaaaa 10967722  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 28665169 - 28665099
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  28665169 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 28665099  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 37824003 - 37823933
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  37824003 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 37823933  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 35611711 - 35611773
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaag 381  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  35611711 aaaagcttctttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaag 35611773  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 41919170 - 41919100
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||| ||||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  41919170 aaaagcttttttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 41919100  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 27194537 - 27194607
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||| ||||||| ||||||||||||| ||||||| | ||||||| || |||||||||||||| |||||||    
T  27194537 aaaagcatctttcagcttaactcaaactaaaaaaataaacttattt-gtaaaggatttcccaagccattatt 27194607  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 27844351 - 27844421
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||| ||||||| ||||||||||||| ||||||| | ||||||| || |||||||||||||| |||||||    
T  27844351 aaaagcatctttcagcttaactcaaactaaaaaaataaacttattt-gtaaaggatttcccaagccattatt 27844421  T

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Target: scaffold0499 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 10439 - 10509
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||| |||||||    
T  10439 aaaagcttctttcagcttaactcaaactaaaaaaataagcttgttt-gttaaggatttcccaagccattatt 10509  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 6309967 - 6309897
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||||||| |||| ||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||    
T  6309967 aaaagcttccttcagcttaactcaaactaaaaaaataagcttattt-gtaaaggatttcccaagccattatt 6309897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 48234075 - 48234146
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact--aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||||||||| |||||||||||||  ||||||| | ||||||| || |||||||||||||| |||||||    
T  48234075 aaaagcttctttcagcttaactcaaactaaaaaaaataaccttattt-gtaaaggatttcccaagccattatt 48234146  T

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Target: scaffold0356 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 15199 - 15129
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaa-aaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    ||||| |||||||| ||||||||||||||| ||||| |||||||||  | |||||||||||||| |||||||    
T  15199 aaaagtttctttcagcttaactcaaactaaaaaaataagcttattt-ctaaaggatttcccaagacattatt 15129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 997 - 1067
Alignment:
Q  319 aaaagcttctttcaacttaactcaaact-aaaaaatcagcttatttagtgaaggatttcccaagtcattatt 389  Q
    |||||||| ||||| ||||||||||||| ||||||| || |||||| || |||||||||||||| |||||||    
T  997 aaaagcttatttcagcttaactcaaactaaaaaaataagtttattt-gtaaaggatttcccaagccattatt 1067  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 43222 - 43255
Alignment:
Q  319 aaaagcttctttcaacttaactcaaactaaaaaa 352  Q
    |||||||||||||| |||||||||||||||||||    
T  43222 aaaagcttctttcagcttaactcaaactaaaaaa 43255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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