View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0762_low_4 (Length: 342)

Name: NF0762_low_4
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0762_low_4
NF0762_low_4
[»] scaffold0010 (1 HSPs)
scaffold0010 (11-334)||(143008-143331)
[»] chr7 (7 HSPs)
chr7 (12-335)||(16067944-16068267)
chr7 (126-233)||(9692989-9693096)
chr7 (261-327)||(16379147-16379212)
chr7 (250-327)||(11091519-11091593)
chr7 (261-326)||(11800097-11800160)
chr7 (250-293)||(46579864-46579907)
chr7 (262-292)||(9693111-9693141)
[»] chr5 (10 HSPs)
chr5 (11-327)||(25791740-25792056)
chr5 (11-178)||(25756188-25756355)
chr5 (11-141)||(19020257-19020386)
chr5 (172-327)||(14137865-14138017)
chr5 (126-313)||(32948741-32948924)
chr5 (190-293)||(13938909-13939012)
chr5 (126-292)||(25581331-25581495)
chr5 (172-252)||(23909154-23909234)
chr5 (220-292)||(24564858-24564929)
chr5 (220-292)||(24605895-24605966)
[»] chr4 (16 HSPs)
chr4 (11-327)||(17419393-17419705)
chr4 (127-326)||(19727534-19727733)
chr4 (126-324)||(13267937-13268132)
chr4 (117-252)||(12230795-12230930)
chr4 (126-293)||(15870947-15871113)
chr4 (126-252)||(18554721-18554842)
chr4 (11-92)||(19727457-19727538)
chr4 (126-233)||(13559366-13559473)
chr4 (126-293)||(15888522-15888688)
chr4 (205-292)||(9886878-9886965)
chr4 (188-252)||(13235220-13235284)
chr4 (250-294)||(20872335-20872379)
chr4 (253-327)||(10057547-10057619)
chr4 (261-327)||(18554837-18554902)
chr4 (261-327)||(13235161-13235225)
chr4 (262-292)||(13559488-13559518)
[»] chr6 (5 HSPs)
chr6 (19-327)||(14746470-14746770)
chr6 (11-327)||(22395344-22395638)
chr6 (126-252)||(19545145-19545266)
chr6 (250-327)||(20733349-20733424)
chr6 (261-327)||(19545261-19545326)
[»] scaffold1043 (1 HSPs)
scaffold1043 (12-324)||(402-708)
[»] scaffold0408 (1 HSPs)
scaffold0408 (19-327)||(14906-15205)
[»] chr8 (6 HSPs)
chr8 (180-334)||(17861384-17861537)
chr8 (126-275)||(10454072-10454220)
chr8 (126-327)||(15727669-15727870)
chr8 (188-283)||(1683187-1683281)
chr8 (195-283)||(1681149-1681236)
chr8 (250-327)||(22237155-22237230)
[»] scaffold0061 (2 HSPs)
scaffold0061 (11-141)||(16550-16680)
scaffold0061 (11-141)||(25608-25738)
[»] chr2 (8 HSPs)
chr2 (126-325)||(29718097-29718294)
chr2 (127-202)||(18985275-18985350)
chr2 (250-327)||(34858297-34858372)
chr2 (250-327)||(34873359-34873434)
chr2 (126-211)||(26861212-26861297)
chr2 (11-90)||(22521725-22521805)
chr2 (250-293)||(20916211-20916254)
chr2 (264-327)||(26861336-26861398)
[»] chr1 (3 HSPs)
chr1 (126-327)||(21496470-21496675)
chr1 (136-293)||(17451354-17451508)
chr1 (250-327)||(21995769-21995844)
[»] scaffold0385 (1 HSPs)
scaffold0385 (126-327)||(16060-16258)
[»] scaffold0290 (1 HSPs)
scaffold0290 (129-327)||(11838-12033)
[»] chr3 (12 HSPs)
chr3 (126-252)||(21977092-21977218)
chr3 (126-252)||(21999523-21999649)
chr3 (126-252)||(22161718-22161844)
chr3 (126-250)||(19186771-19186895)
chr3 (126-233)||(10341062-10341169)
chr3 (131-293)||(16357825-16357985)
chr3 (130-214)||(10302744-10302828)
chr3 (231-285)||(27868366-27868419)
chr3 (250-327)||(52988963-52989038)
chr3 (261-292)||(10341017-10341048)
chr3 (250-293)||(14967088-14967131)
chr3 (261-291)||(10302693-10302723)
[»] scaffold0207 (1 HSPs)
scaffold0207 (126-286)||(739-897)
[»] scaffold0118 (2 HSPs)
scaffold0118 (136-252)||(11943-12059)
scaffold0118 (263-327)||(11883-11946)
[»] scaffold0364 (2 HSPs)
scaffold0364 (126-214)||(14588-14676)
scaffold0364 (250-284)||(14532-14566)
[»] scaffold0170 (1 HSPs)
scaffold0170 (232-296)||(18095-18159)
[»] scaffold0686 (1 HSPs)
scaffold0686 (250-327)||(1311-1386)
[»] scaffold0094 (1 HSPs)
scaffold0094 (126-252)||(2501-2621)
[»] scaffold0395 (1 HSPs)
scaffold0395 (250-327)||(11761-11836)
[»] scaffold0381 (1 HSPs)
scaffold0381 (205-292)||(11579-11666)


Alignment Details
Target: scaffold0010 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 143331 - 143008
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  143331 tgagatgaataagcattgatgtcattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 143232  T
Q  111 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttat 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||    
T  143231 gtggatagattagatgtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttat 143132  T
Q  211 gatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtt 310  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  143131 gatgtgaattttgatgagagattgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttgtttgagtt 143032  T
Q  311 tttagtcttaaaaagagaataatc 334  Q
    ||||||||||||||||||||||||    
T  143031 tttagtcttaaaaagagaataatc 143008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 335
Target Start/End: Original strand, 16067944 - 16068267
Alignment:
Q  12 gagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgag 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||  ||||||||||| ||||||||||||||||||||||||| ||    
T  16067944 gagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacaag 16068043  T
Q  112 tggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatg 211  Q
     ||||| |||||||||||||||| ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||    
T  16068044 gggataaattagatgtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatg 16068143  T
Q  212 atgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagttt 311  Q
    ||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068144 atgtgaattttgatgagaaaatgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagttt 16068243  T
Q  312 ttagtcttaaaaagagaataatct 335  Q
    ||||||||||||||||||||||||    
T  16068244 ttagtcttaaaaagagaataatct 16068267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 9692989 - 9693096
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    |||||| || ||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||||| | ||||||  |||||||||| ||| ||||||    
T  9692989 gtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgat 9693088  T
Q  226 gagagaat 233  Q
    ||||||||    
T  9693089 gagagaat 9693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 16379147 - 16379212
Alignment:
Q  261 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    ||||||| ||||||||||||||||||||||||| || ||| | ||||||||||||| ||||||||||    
T  16379147 ttgaaagttgagaattgaggaaaactagtttaggtt-tttgaattgagtttttagttttaaaaagag 16379212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 11091593 - 11091519
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||   |||  | |||||||| |||||||||||||||    
T  11091593 aaaagatgaaattgaaagctgagaattaaggaaaactagtttag---gttcgaattgagtttctagtcttaaaaagag 11091519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 11800097 - 11800160
Alignment:
Q  261 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 326  Q
    |||||||||||||||||||||||||||||| || || ||||| | ||| |||||||||||||||||    
T  11800097 ttgaaagatgagaattgaggaaaactagttaagctt-ttttaatagag-ttttagtcttaaaaaga 11800160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 46579864 - 46579907
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  46579864 aaaagatgaaattgaaagttgagaattaaggaaaactagtttag 46579907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 9693111 - 9693141
Alignment:
Q  262 tgaaagatgagaattgaggaaaactagttta 292  Q
    |||||||||||||||||||||||||||||||    
T  9693111 tgaaagatgagaattgaggaaaactagttta 9693141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 25792056 - 25791740
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 110  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||| | |||| ||||||   ||||||||||||||||||||||||||||||| ||||||    
T  25792056 tgagattaataagcattgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacga 25791957  T
Q  111 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttat 210  Q
    | ||| | |||||||||||| ||| ||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  25791956 ggggacaaattagatgtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttat 25791857  T
Q  211 gatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtt 310  Q
    ||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||| || || |||||||    
T  25791856 gatgtgaactttgatgagagaatgatgatgaacgaattgaaaatgtgaagttgaaagatgagaattgagaaaaactagtttagttttttctaattgagtt 25791757  T
Q  311 tttagtcttaaaaagag 327  Q
    |||||||||||||||||    
T  25791756 tttagtcttaaaaagag 25791740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 25756188 - 25756355
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| | |||| ||||||   ||||||||||||||||||||||||||||||| ||||||    
T  25756188 tgagatgaataagcattgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacga 25756287  T
Q  111 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggt 178  Q
    | ||| | |||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||    
T  25756288 ggggacatattagatgtaagagggagaatctttgcactttagggtatcttaatctatgacaggagggt 25756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 19020386 - 19020257
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgac-atgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacg 109  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||| |||||| |||  | ||| |||| |||||||||||||||||||||||||| |    
T  19020386 tgagatgaataagcattgatgttattatttagatgacaaagtagtgatggttccaacttgggttgttgatggcgctcttaaggagtatcttaggccaatg 19020287  T
Q  110 agtggatagattagatgtaagggggtgaatct 141  Q
    |  ||| |||||||||||||||||| ||||||    
T  19020286 a--ggagagattagatgtaagggggagaatct 19020257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 172 - 327
Target Start/End: Complemental strand, 14138017 - 14137865
Alignment:
Q  172 ggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatga 271  Q
    ||||||||||||||||| |||| ||||||||  ||||||| |||||| ||||||||  |||| ||| |||||||||| ||||||| ||||||||||||||    
T  14138017 ggagggttgtcttaaatcttaatatgttgttgttgttatgctgtgaattttgatgaaggaataatgatgaacaaatt-aaaagataaagttgaaagatga 14137919  T
Q  272 gaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    ||||||||| |||||||||||| || ||| |  ||||||||||| | |||||||||    
T  14137918 gaattgagg-aaactagtttaggtt-tttaaaatgagtttttagccgtaaaaagag 14137865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 32948924 - 32948741
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| ||||||||||||||||  |||||| |||||  ||  ||||||||||||| |||||||| |||||||| ||||||||||| | | | ||||    
T  32948924 gtaagggggagaatctttgcactttagagtatctaaatctt-gatgggagggttgtctttaattttaatatgttgttgctgttatgatgag-attgtgat 32948827  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagttttt 313  Q
    | |||| | ||| |||||  ||| |||||||||||||||||||| ||||| |||||||||| |||||| || ||||| ||||||||||    
T  32948826 gtgagatttatgatgaacggatt-aaaagatgaagttgaaagataagaatcgaggaaaacttgtttaggtt-ttttaattgagttttt 32948741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 13939012 - 13938909
Alignment:
Q  190 ttaaaatgttgttactgttatgatgtga-actttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactag 288  Q
    |||| ||||||||  ||||||||||||| | |||||||||||| | ||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  13939012 ttaagatgttgttgttgttatgatgtgagattttgatgagagatttatgatgaacgaattgaaa-gataaagttgaaagatgagaattgaggaaaactag 13938914  T
Q  289 tttag 293  Q
    |||||    
T  13938913 tttag 13938909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 292
Target Start/End: Original strand, 25581331 - 25581495
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaa-atgttgttactgttatgatgtgaactttga 224  Q
    ||||||||| |||||||| ||||||| ||||||||| |||| ||  |||||   ||||| ||||||||  ||||||||  |||||||||| || || |||    
T  25581331 gtaagggggagaatctttccactttagggtatctta-tctatgattggaggaacgtctttaattttaattatgttgttgttgttatgatgaga-ctgtga 25581428  T
Q  225 tgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 292  Q
    ||||||| | ||| ||||| |||| |||||||||||||||||||||||||||||| |||||| |||||    
T  25581429 tgagagatttatgatgaacgaatt-aaaagatgaagttgaaagatgagaattgagtaaaacttgttta 25581495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 23909234 - 23909154
Alignment:
Q  172 ggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaa 252  Q
    |||||||||||||||||||||| | ||||||  |||||||||| ||| |||||||||||||| | | ||||| ||||||||    
T  23909234 ggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatgagagaataacgatgaacgaattgaaa 23909154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 24564929 - 24564858
Alignment:
Q  220 tttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 292  Q
    |||||||||||| | ||| ||||| || | ||||||||||||||||| |||||||||||||||||||| ||||    
T  24564929 tttgatgagagatttatgatgaacgaaat-aaaagatgaagttgaaaaatgagaattgaggaaaactaattta 24564858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 24605966 - 24605895
Alignment:
Q  220 tttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 292  Q
    |||||||||||| | ||| ||||| || | ||||||||||||||||| |||||||||||||||||||| ||||    
T  24605966 tttgatgagagatttatgatgaacgaaat-aaaagatgaagttgaaaaatgagaattgaggaaaactaattta 24605895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 17419705 - 17419393
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatg-tagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacg 109  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||| ||| | ||||||||   ||||||||||||||||||||||||||    
T  17419705 tgagatgaataagcattgatgttattctttatatgacaaggtagtgatggttccagtttatgttgtagatggtactcttaaggagtatcttaggccaacg 17419606  T
Q  110 agtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgtta 209  Q
    |||||||||||     ||||||||  |||||||||||||||| |||||||||||||| ||  | ||  |||| ||||||||||||||||||||||| |||    
T  17419605 agtggatagat-----gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactatta 17419511  T
Q  210 tgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagt 309  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||    
T  17419510 tgatgtgaattttgatgagagaatgatgatgaacgaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagttttttttaattaagt 17419411  T
Q  310 ttttagtcttaaaaagag 327  Q
    ||||||||||| ||||||    
T  17419410 ttttagtcttataaagag 17419393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 127 - 326
Target Start/End: Original strand, 19727534 - 19727733
Alignment:
Q  127 taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 226  Q
    ||||| || |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg 19727633  T
Q  227 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 326  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19727634 agagaatgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 19727733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 126 - 324
Target Start/End: Complemental strand, 13268132 - 13267937
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||||||||||||||| ||||||||||| || ||  |||||||| ||||||||||||| |  |||||  |||||||||||||| |||||     
T  13268132 gtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgac 13268033  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaa 324  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||| || ||| | ||||| |||||||||||||||    
T  13268032 gagagaatgatgatgaacgaattg-aaagatgaagttgaaagatgacaattgagtaaaactagtttagatt-tttgaattgag-ttttagtcttaaaaa 13267937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 12230930 - 12230795
Alignment:
Q  117 agattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtg 216  Q
    ||||| || |||||||||  ||||||||||||||| ||||||||||||||  |  |||||||||||||||||||||| |||||||| || ||||||||||    
T  12230930 agattcgaggtaagggggataatctttgcactttagggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtg 12230831  T
Q  217 aactttgatgagagaatgatggtgaacaaattgaaa 252  Q
    || |||||||||||||||||| ||||||||||||||    
T  12230830 aattttgatgagagaatgatgatgaacaaattgaaa 12230795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 293
Target Start/End: Original strand, 15870947 - 15871113
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||||||||||||||| ||||||||||| || ||  ||||||||||||||||||||||     | || |||||||||||| || ||||||    
T  15870947 gtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaattttgat 15871046  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    ||| |||||||| || || ||||| ||||||||| || |||||||| |||||||| ||||||||||||    
T  15871047 gagtgaatgatgatggacgaattg-aaagatgaaattaaaagatgacaattgagggaaactagtttag 15871113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 18554721 - 18554842
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||||||||||||||| |||||||||||||| || | ||||||||||     |||||| |||||||| ||||||||||||||| ||||||    
T  18554721 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaattttgat 18554815  T
Q  226 gagagaatgatggtgaacaaattgaaa 252  Q
    |||| ||||||| ||||  ||||||||    
T  18554816 gagaaaatgatgatgaaagaattgaaa 18554842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 19727457 - 19727538
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaagg 92  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| | |||||||||| |||||||||    
T  19727457 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttatgttgtagatgacactcttaagg 19727538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 13559366 - 13559473
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    |||||| || ||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||||| | ||||||  |||||||||| ||| ||||||    
T  13559366 gtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgat 13559465  T
Q  226 gagagaat 233  Q
    ||||||||    
T  13559466 gagagaat 13559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 293
Target Start/End: Original strand, 15888522 - 15888688
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||| ||| |||||||||||||||| | ||||| ||| || ||  ||||||||||||||||||||||     | || |||||||||||| ||  |||||    
T  15888522 gtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaatattgat 15888621  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    ||| |||||||| || || |||||||| |||||| || |||||||| |||||||| ||||||||||||    
T  15888622 gagtgaatgatgatggacgaattgaaa-gatgaaattaaaagatgacaattgagggaaactagtttag 15888688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 9886965 - 9886878
Alignment:
Q  205 tgttatgatgtgaactt-tgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 292  Q
    |||||||||||||  || |||||||||| | ||| | ||| |||| |||||||| || ||||||||||||||||| |||||||||||||    
T  9886965 tgttatgatgtgagattgtgatgagagatttatgataaacgaatt-aaaagatgcagatgaaagatgagaattgaagaaaactagttta 9886878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 13235284 - 13235220
Alignment:
Q  188 ttttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaa 252  Q
    |||||| ||||||||| |||||||||||||| ||||| |||||||||| | | ||| ||||||||    
T  13235284 ttttaatatgttgttagtgttatgatgtgaattttgacgagagaatgacgattaacgaattgaaa 13235220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 20872335 - 20872379
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagt 294  Q
    ||||||||||||||||| || | ||||||||||||||||||||||    
T  20872335 aaaagatgaagttgaaatatcataattgaggaaaactagtttagt 20872379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 10057619 - 10057547
Alignment:
Q  253 agatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    ||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  10057619 agatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 10057547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 18554837 - 18554902
Alignment:
Q  261 ttgaaagatgagaattgagg-aaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||||||||||||| ||||||||||||| || ||| | ||||| ||||||||||||||||||    
T  18554837 ttgaaagatgagaattgaggaaaaactagtttaggtt-tttgaattgag-ttttagtcttaaaaagag 18554902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 13235225 - 13235161
Alignment:
Q  261 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||| |||||||||||||||||| ||||||| || ||| | ||||| ||||||||||||||||||    
T  13235225 ttgaaatatgagaattgaggaaaaccagtttaggtt-tttgaattgag-ttttagtcttaaaaagag 13235161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 13559488 - 13559518
Alignment:
Q  262 tgaaagatgagaattgaggaaaactagttta 292  Q
    |||||||||||||||||||||||||||||||    
T  13559488 tgaaagatgagaattgaggaaaactagttta 13559518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 14746770 - 14746470
Alignment:
Q  19 ataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatag 118  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||||| ||||||    
T  14746770 ataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatag 14746671  T
Q  119 attagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaa 218  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||| ||   || ||||| |||||||||||||||||||||||||||||||||||||    
T  14746670 attagatgtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaa 14746571  T
Q  219 ctttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtct 318  Q
     ||| |||||||||||||| ||||| |||||||||||||       ||||||||||||| ||||||||||||| |||| ||||| ||||  |||||||||    
T  14746570 tttttatgagagaatgatgatgaacgaattgaaaagatg-------aagatgagaattgcggaaaactagttttgttttttttaattga-attttagtct 14746479  T
Q  319 taaaaagag 327  Q
    | |||||||    
T  14746478 tgaaaagag 14746470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 22395344 - 22395638
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 110  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||    
T  22395344 tgaggtgaataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgtagatgccgctcataaggaatatcttaggccaatga 22395443  T
Q  111 gtggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttat 210  Q
    | ||||| ||| |||||||||||| || ||||||||||||| ||||||||||| || ||  |||||||||||                      ||||||    
T  22395444 ggggataaattggatgtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggttgtc----------------------tgttat 22395521  T
Q  211 gatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtt 310  Q
    |||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||  |||| || ||||| |||| ||    
T  22395522 gatgtgaattttgatgagagaaagatgatgaacgaattgaaaggatgaagttgaaagatgagaattaaggaaaagtatattaggttcttttaattgaatt 22395621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 19545145 - 19545266
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||||||||||||||| |||||||||||||| || | ||||||||||     |||||| |||||||| ||||||| ||||||| ||||||    
T  19545145 gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaattttgat 19545239  T
Q  226 gagagaatgatggtgaacaaattgaaa 252  Q
    |||| ||||||| ||||  ||||||||    
T  19545240 gagaaaatgatgatgaaagaattgaaa 19545266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 20733349 - 20733424
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  20733349 aaaagatgaaattgaaagctgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 20733424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 19545261 - 19545326
Alignment:
Q  261 ttgaaagatgagaattgagg-aaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||||||||||||| ||||||||||||| || ||| | ||||| ||||||||||||||||||    
T  19545261 ttgaaagatgagaattgaggaaaaactagtttaggtt-tttgaattgag-ttttagtcttaaaaagag 19545326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 402 - 708
Alignment:
Q  12 gagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgag 111  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||  |||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  402 gagatggataagcattgatgttattctttagatgacaagtagggatgattccagcttatgttgtagatgacactcttaaggagtatcttaggccaacgag 501  T
Q  112 tggatagattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaa-ttttaaaatgttgttactgttat 210  Q
     |||||||||||||||||||||| ||||||||||| | ||  ||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||    
T  502 gggatagattagatgtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttat 601  T
Q  211 gatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtt 310  Q
    ||| |||| ||| |||||||||||||| ||||| |||||||||||||       ||||||||||||||||||||||||||||| || ||||| |||| ||    
T  602 gatatgaatttttatgagagaatgatgatgaacgaattgaaaagatg-------aagatgagaattgaggaaaactagtttaggtttttttaattgaatt 694  T
Q  311 tttagtcttaaaaa 324  Q
    ||||||||| ||||    
T  695 tttagtcttgaaaa 708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 15205 - 14906
Alignment:
Q  19 ataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatag 118  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||||| ||||||    
T  15205 ataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatag 15106  T
Q  119 attagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaa 218  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||| ||   || ||||| |||||||||||||||||||||||||||||||||||||    
T  15105 attagatgtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaa 15006  T
Q  219 ctttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtct 318  Q
     ||| |||||||||||||| ||||| |||||||||||||       ||||||||||||| ||||||||||||| |||| ||||| ||||  |||||||||    
T  15005 tttttatgagagaatgatgatgaacgaattgaaaagatg-------aagatgagaattgcggaaaactagttttgttt-ttttaattga-attttagtct 14915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 17861384 - 17861537
Alignment:
Q  180 gtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgag 279  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  17861384 gtcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatggtgaataaattgaaaagatgaagtggaaagatgagaattgag 17861483  T
Q  280 gaaaactagtttagtttgttttatttgagtttttagtcttaaaaagagaataatc 334  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17861484 gaaaactag-ttagtttgttttatttgagtttttagtcttaaaaagagaataatc 17861537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 10454072 - 10454220
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||  ||||||||| |||||| |||||||||||||| ||  || |||||||| || ||||||| ||||| || |||||||| |||||| ||||||    
T  10454072 gtaaggggaagaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaattttgat 10454171  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaat 275  Q
    |||||||||||| ||||| |||| |||| |||| ||||||||||||||||    
T  10454172 gagagaatgatgatgaacgaatt-aaaatatgatgttgaaagatgagaat 10454220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 327
Target Start/End: Complemental strand, 15727870 - 15727669
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacagga------gggttgtcttaaattttaaaatgttgttactgttatgatgtgaac 219  Q
    ||||||||| ||||| || ||||||| |||||||||||||| ||  |||      ||||||| ||| ||||||| ||||||||   |||||||||||||     
T  15727870 gtaagggggagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaatatgttgtt---gttatgatgtgaat 15727774  T
Q  220 tttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtctt 319  Q
    ||| ||||||| |||| | ||||  |||| |||||||||||||||||||| ||||||||||||||||||||| | |  ||| | ||||||||||| ||||    
T  15727773 ttttatgagaggatgaagatgaatgaatt-aaaagatgaagttgaaagataagaattgaggaaaactagttttgat--tttgaattgagtttttattctt 15727677  T
Q  320 aaaaagag 327  Q
    ||||||||    
T  15727676 aaaaagag 15727669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 1683281 - 1683187
Alignment:
Q  188 ttttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaa 283  Q
    |||||| |||||||| | ||||||||||||| |||||||||||| ||||| ||||| |||| ||||||||||||||| | ||||||||| ||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatgaacgaatt-aaaagatgaagttgacatatgagaattaaggaaa 1683187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 1681236 - 1681149
Alignment:
Q  195 atgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaa 283  Q
    |||||||| | ||||||||||||| |||||||||||| ||||| | ||| |||| |||||||||| |||| ||||||||||| ||||||    
T  1681236 atgttgttgcggttatgatgtgaattttgatgagagactgatgataaacgaatt-aaaagatgaaattgacagatgagaattaaggaaa 1681149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 22237155 - 22237230
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  22237155 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 22237230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 16550 - 16680
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16550 tgagatgaataagcattgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 16649  T
Q  111 gtggatagattagatgtaagggggtgaatct 141  Q
    |||||||||||||||||||||||| ||||||    
T  16650 gtggatagattagatgtaagggggagaatct 16680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 25608 - 25738
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25608 tgagatgaataagcattgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 25707  T
Q  111 gtggatagattagatgtaagggggtgaatct 141  Q
    |||||||||||||||||||||||| ||||||    
T  25708 gtggatagattagatgtaagggggagaatct 25738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 126 - 325
Target Start/End: Original strand, 29718097 - 29718294
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||| |||||||||||  ||||||||||||| ||  | |||||||||||||||||||| ||||||||  |||||||||||||| ||||||    
T  29718097 gtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaattttgat 29718196  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaag 325  Q
    |||||||||||| ||||  |||| ||||||||||||||||||||||||||| ||| |||||||||||| || ||  | |||||||||||  |||||||||    
T  29718197 gagagaatgatgatgaatgaatt-aaaagatgaagttgaaagatgagaattaagg-aaactagtttaggtttttcgaattgagtttttaaccttaaaaag 29718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 18985275 - 18985350
Alignment:
Q  127 taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgtt 202  Q
    |||||||| |||||||||||| ||| |||||| ||||||| || ||||||||||| ||||||||||| ||||||||    
T  18985275 taagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgtt 18985350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 34858297 - 34858372
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  34858297 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 34858372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 34873359 - 34873434
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  34873359 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 34873434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 26861212 - 26861297
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatg 211  Q
    ||||||||| || ||||||||||||| |||||||||||| | ||  | |||||||| ||||||||||| || || || ||||||||    
T  26861212 gtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatg 26861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 22521805 - 22521725
Alignment:
Q  11 tgagatgaataagcattgatgttattctttagatgac-atgtagtgattgttccagcttacgatgtagatgacgctcttaa 90  Q
    |||||||||||| ||||||||||||| |||||||||| | |||||||| ||| || |||  | |||||||| |||||||||    
T  22521805 tgagatgaataaccattgatgttattttttagatgacaaagtagtgatggttacaacttgtgttgtagatggcgctcttaa 22521725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 20916254 - 20916211
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  20916254 aaaagatgaaattgaaagctgagaattaaggaaaactagtttag 20916211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 26861336 - 26861398
Alignment:
Q  264 aaagatgagaattgaggaa-aactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    ||||||||||||||||| | ||||||||||| ||  || | ||||||||||||||||||||||||    
T  26861336 aaagatgagaattgagggagaactagtttaggtt--ttgaattgagtttttagtcttaaaaagag 26861398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 126 - 327
Target Start/End: Complemental strand, 21496675 - 21496470
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||||||||||||||| |||||||||||||| |   |||||||| |||||||||| || |||||||| ||  |||||| ||||  || ||    
T  21496675 gtaagggggagaatctttgcactttagggtatcttaatctatgtg-ggagggttatcttaaatttaaatatgttgtttctaatatgatatgaatatttat 21496577  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttattt------gagtttttagtctt 319  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||| |||      ||||||||||||||    
T  21496576 gagagaatgatgatgaacaaattgaaa-gatgaagttgaatgatgagaattgacgaaaactagtttagttttttttttttttaatagagtttttagtctt 21496478  T
Q  320 aaaaagag 327  Q
    ||||||||    
T  21496477 aaaaagag 21496470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 293
Target Start/End: Complemental strand, 17451508 - 17451354
Alignment:
Q  136 gaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactt-tgatgagagaatg 234  Q
    |||||||||||||||| ||||||||||| || ||  |||||||  |  ||| | |||| ||| |||| || |||||||||||  || |||||||||| |     
T  17451508 gaatctttgcactttagggtatcttaatatatgat-ggagggtaat--taattcttaagatgatgttgctcttatgatgtgagattgtgatgagagattt 17451412  T
Q  235 atggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    ||| ||||  |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17451411 atgatgaaagaatt-aaaagatgaagttgaaagatgagaattgaggaaagctagtttag 17451354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 21995769 - 21995844
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  21995769 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 21995844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 126 - 327
Target Start/End: Complemental strand, 16258 - 16060
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| ||||||||| |||||| ||||||||||| || ||  ||||||| |||||||||||||| |  ||||| || |||||||||||| ||||||    
T  16258 gtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaattttgat 16159  T
Q  226 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaag 325  Q
    ||| |||||||| ||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||  || ||| | ||||| ||||||||||||||||    
T  16158 gagtgaatgatgatgaacgaattg-aaagatgaaattgaaagatgacaattgaggaaaactagtttaagtt-tttgaattgag-ttttagtcttaaaaag 16062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 129 - 327
Target Start/End: Original strand, 11838 - 12033
Alignment:
Q  129 agggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgag 228  Q
    |||||| |||||||||||||||| ||| || |||| || || ||||||||||| ||||||||||| |||||||| |||||||||||| || |||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatgag 11937  T
Q  229 agaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    | | | ||| ||||| |||| |||||||||||||||| |||||||| |||||||||||||||||| || ||| | ||||| ||||||| ||||||||||    
T  11938 aaatttatgatgaacgaatt-aaaagatgaagttgaatgatgagaaatgaggaaaactagtttaggtt-tttgaattgag-ttttagttttaaaaagag 12033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 21977218 - 21977092
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||  |||||||||||||||| ||||||||||| || ||  | |||||||||||||||||||| |  ||||| ||||||||||||||| ||||||    
T  21977218 gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 21977119  T
Q  226 gagagaatgatggtgaacaaattgaaa 252  Q
    ||| |||||||| ||||| ||||||||    
T  21977118 gagtgaatgatgatgaacgaattgaaa 21977092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 21999649 - 21999523
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||  |||||||||||||||| ||||||||||| || ||  | |||||||||||||||||||| |  ||||| ||||||||||||||| ||||||    
T  21999649 gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 21999550  T
Q  226 gagagaatgatggtgaacaaattgaaa 252  Q
    ||| |||||||| ||||| ||||||||    
T  21999549 gagtgaatgatgatgaacgaattgaaa 21999523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 22161844 - 22161718
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||  |||||||||||||||| ||||||||||| || ||  | ||||||||||||||||| || |  ||||| ||||||||||||||| ||||||    
T  22161844 gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaattttgat 22161745  T
Q  226 gagagaatgatggtgaacaaattgaaa 252  Q
    ||| ||||||||  |||| ||||||||    
T  22161744 gagtgaatgatgaagaacgaattgaaa 22161718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 19186895 - 19186771
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    |||||| || |||||||||||||||| ||||||||||| || ||  || |||| |||||||||||||| |  ||||| ||||||||||||||| ||||||    
T  19186895 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 19186796  T
Q  226 gagagaatgatggtgaacaaattga 250  Q
     || |||||||| ||||| ||||||    
T  19186795 cagtgaatgatgatgaacgaattga 19186771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 10341169 - 10341062
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| |||| ||||||||||| |||||||||||||| |   ||||| |||||||||||||||| | ||||||  |||||||||| ||| ||||||    
T  10341169 gtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaattttgat 10341070  T
Q  226 gagagaat 233  Q
    ||||||||    
T  10341069 gagagaat 10341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 16357825 - 16357985
Alignment:
Q  131 ggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagag 230  Q
    |||| |||||||||||||||| ||||||||||| || ||  ||||| ||||||||||||||||     | || |||||||||||| ||  |||||||| |    
T  16357825 ggggagaatctttgcactttagggtatcttaatttatgatgggagg-ttgtcttaaattttaatgcacttttgctgttatgatgtaaatgttgatgagtg 16357923  T
Q  231 aatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    ||||||| || || |||||||| |||||| || |||||||| |||||||| ||||||||||||    
T  16357924 aatgatgatggacgaattgaaa-gatgaaattaaaagatgacaattgagggaaactagtttag 16357985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 10302828 - 10302744
Alignment:
Q  130 gggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg 214  Q
    ||||| |||||||||||||||| |||||||||||||| ||  |||||||||||||||||||||| | ||||||  ||||||||||    
T  10302828 gggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 27868366 - 27868419
Alignment:
Q  231 aatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaac 285  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  27868366 aatgatgatgaacaaattgaaa-gatgaagttaaaagatgagaattgaggaaaac 27868419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 52988963 - 52989038
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  52988963 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 52989038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 10341048 - 10341017
Alignment:
Q  261 ttgaaagatgagaattgaggaaaactagttta 292  Q
    ||||||||||||||||||||||||||||||||    
T  10341048 ttgaaagatgagaattgaggaaaactagttta 10341017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 14967131 - 14967088
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttag 293  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  14967131 aaaagatgaaattgaaagttgagaattaaggaaaactagtttag 14967088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 10302723 - 10302693
Alignment:
Q  261 ttgaaagatgagaattgaggaaaactagttt 291  Q
    |||||||||||||||||||||||||||||||    
T  10302723 ttgaaagatgagaattgaggaaaactagttt 10302693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 739 - 897
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa-aatgttgttactgttatgatgtgaactttga 224  Q
    ||||||||| ||| |||||||||||| |||||||||||||| ||  ||||||||||||| ||||||||  |||||||| ||||||||||| | | | |||    
T  739 gtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatgag-attatga 836  T
Q  225 tgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaact 286  Q
     |||||| | ||| ||||| ||||  ||||| ||||||||||||||||||||||||||||||    
T  837 cgagagatttatgatgaacgaatt-caaagacgaagttgaaagatgagaattgaggaaaact 897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 12059 - 11943
Alignment:
Q  136 gaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatga 235  Q
    |||| ||||||||||| ||||||||||| || ||  ||||||||||||||||||||||    ||||| ||||||||||||||| ||||||||||||||||    
T  12059 gaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatga 11960  T
Q  236 tggtgaacaaattgaaa 252  Q
    || ||||| ||| ||||    
T  11959 tgatgaacgaatagaaa 11943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 11946 - 11883
Alignment:
Q  263 gaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    ||||||||| ||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||    
T  11946 gaaagatgaaaattgagtaaaactagtttagatt-tttgaattgagtttttagtcttaaaaagag 11883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 14676 - 14588
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg 214  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||  ||||||||||||| ||||| || |||||||| |||||||||||    
T  14676 gtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 14566 - 14532
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaa 284  Q
    |||||||||||||||||||||||||| ||||||||    
T  14566 aaaagatgaagttgaaagatgagaatagaggaaaa 14532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 18159 - 18095
Alignment:
Q  232 atgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagttt 296  Q
    |||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  18159 atgatgatgaacgaattaaaaagatgaagttgaaagacgagaattgaggaaaactagtttagttt 18095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 1386 - 1311
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  1386 aaaagatgaaattgaaagatgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 2501 - 2621
Alignment:
Q  126 gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgat 225  Q
    ||||||||| ||||||||||| |||| |||||||||||||| || | ||||||| |     ||||||| |||||||| ||| ||||||||||| |||||     
T  2501 gtaagggggagaatctttgca-tttagggtatcttaatctatgatatgagggttat-----attttaatatgttgttgctggtatgatgtgaattttgac 2594  T
Q  226 gagagaatgatggtgaacaaattgaaa 252  Q
    |||| ||||||| ||||  ||||||||    
T  2595 gagaaaatgatgatgaaagaattgaaa 2621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 11836 - 11761
Alignment:
Q  250 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 327  Q
    |||||||||| ||||||| | |||||| |||||||||||||||| |  ||| | |||||||| |||||||||||||||    
T  11836 aaaagatgaaattgaaagctaagaattaaggaaaactagtttaggt--tttgaattgagtttctagtcttaaaaagag 11761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 11579 - 11666
Alignment:
Q  205 tgttatgatgtgaactt-tgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 292  Q
    |||||||||||||  || |||||||||| | ||| | ||| |||| |||||||| || ||||||||||||||||| |||||||||||||    
T  11579 tgttatgatgtgagattgtgatgagagatttatgataaacgaatt-aaaagatgcagatgaaagatgagaattgaagaaaactagttta 11666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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