View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0762_low_5 (Length: 323)
Name: NF0762_low_5
Description: NF0762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0762_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 115 - 323
Target Start/End: Original strand, 1793245 - 1793453
Alignment:
| Q |
115 |
gctcatctacatcaagtaaaatacttggatattgacgactattttctaaaggtataatgcttgaattgacaaccctaatattgtttagtttcccacacct |
214 |
Q |
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| T |
1793245 |
gctcatctacatcaagtaaaatacttggatattgacgactattttctaaaggtataatgcttgaattgacaaccctaatattgtttagtttcccacacct |
1793344 |
T |
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| Q |
215 |
ctaattccctaccaatttgaaatgaactacaataatgagtatgcaactcttgatctgcaagtattataaacatcatattctgatttatagcaatttttct |
314 |
Q |
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| T |
1793345 |
ccaattccctaccaatttgaaatgaactacaataatgagtatgcaactcttgatctgcaagtattataaacattatattctgatttatagcaatttttct |
1793444 |
T |
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| Q |
315 |
tttctactt |
323 |
Q |
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||||||||| |
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| T |
1793445 |
tttctactt |
1793453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 2007155 - 2007212
Alignment:
| Q |
255 |
atgcaactcttgatctgcaagtattataaacatcatattctgatttatagcaattttt |
312 |
Q |
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| T |
2007155 |
atgcaactcttgatctgcaagtatttaaaacattatattctgatttagagaaattttt |
2007212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 2011135 - 2011199
Alignment:
| Q |
249 |
atgagtatgcaactcttgatctgcaagtattataaacatcatattctgatttatagcaatttttc |
313 |
Q |
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| T |
2011135 |
atgaatatgcaactcttgatctcaaagtatttgaaacattatattctgattcagagcaaattttc |
2011199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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