View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0763-Insertion-2 (Length: 507)
Name: NF0763-Insertion-2
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0763-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 79 - 507
Target Start/End: Complemental strand, 9491048 - 9490618
Alignment:
| Q |
79 |
aaaatgagtaaaaaatatcatgatcatacatgaggagaagatcctctatttataatgtctcttcaaagttatacactcttt--actcatgagtttgcttc |
176 |
Q |
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| T |
9491048 |
aaaatgagtaaaaaatatcatgatcatacatgaggagaagatcctctatttataatgtctcttcaaagttatacgctctttttactcattagtttgcttc |
9490949 |
T |
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| Q |
177 |
tgatatattcagtttgttatgcaactgaatccaaaatgggaggtggaacttgtctaatttgaatgtgtccctcgatgctaccaacaatgttgtgcctatc |
276 |
Q |
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| T |
9490948 |
ggatatattcagtttgttatgcaactgaatccaaaatgggaggtggaacttgtctaatttgaatgtgtccctcgatgctaccaacaatgttgtgcctatc |
9490849 |
T |
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| Q |
277 |
tgtcagtgcttctagaattctgagttttcaaggatgatgttagggggtagatttccacaatttatcatcctttatgctactatggtcaaaacctcataca |
376 |
Q |
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| T |
9490848 |
tgtcagtgcttctagaattctgagttttcaaggatgatgttagggggtagatttccacaatttatcatcctttatgctactatggtcaaaacctcataca |
9490749 |
T |
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| Q |
377 |
agtttatatttagaccttgatatggggccattcttgaactttcttgctagacaatatttcatgagataactaggtttggccttttctggtccataccatt |
476 |
Q |
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| T |
9490748 |
agtttatatttagaccttgatatggggccattcttgaactttcttgctagacaatatttcatgagataactaggtttggccttttctggtccataccatt |
9490649 |
T |
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| Q |
477 |
acaataccaaattcaactctatttaatatca |
507 |
Q |
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| T |
9490648 |
acaataccaaattcaactctatttaatatca |
9490618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 9492083 - 9492008
Alignment:
| Q |
7 |
aaaaagaacttgaaggggtgtgcgttgtacatgtaaaagatactccgatgtcaaaggtgtgatagtggataaaaaa |
82 |
Q |
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| T |
9492083 |
aaaaagaacttgaaggggtgtgtgttgtacatgtaaaagatactccgatgtcaaaggtgtgatagtggatagaaaa |
9492008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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