View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0763-Insertion-4 (Length: 174)
Name: NF0763-Insertion-4
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0763-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 4e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 17441864 - 17442031
Alignment:
| Q |
8 |
gcatccatgtcatccacagaaaaaa-tctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
106 |
Q |
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||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17441864 |
gcatccatgtcatccacagaaaaaaatctcgaaccgccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttacagatgaagt |
17441963 |
T |
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| Q |
107 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
174 |
Q |
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| T |
17441964 |
ttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcc |
17442031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 6e-42; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 33283672 - 33283505
Alignment:
| Q |
8 |
gcatccatgtcatccacagaaa-aaatctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
106 |
Q |
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| T |
33283672 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccggattcacctgttgcagatgaagt |
33283573 |
T |
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| Q |
107 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
174 |
Q |
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| T |
33283572 |
ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcc |
33283505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 33357983 - 33357835
Alignment:
| Q |
17 |
tcatccacagaaaaa-atctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactga |
115 |
Q |
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| T |
33357983 |
tcatccacagaaaaatatctcaaacctccatatcagccaaagaaacagaagaatccgtggaggtaccagattcacctgttgcagatgaagtttctactga |
33357884 |
T |
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| Q |
116 |
atctccacagnnnnnnntcttgaacctccatatcattgttcaattcattg |
165 |
Q |
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| T |
33357883 |
atctccacag-aaaaaatctcgaacctccatatcattggtcgattcattg |
33357835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 33387144 - 33386977
Alignment:
| Q |
8 |
gcatccatgtcatccacagaaa-aaatctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
106 |
Q |
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|||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
33387144 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagt |
33387045 |
T |
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| Q |
107 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
174 |
Q |
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| T |
33387044 |
ttctactgaatctcaacagaaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcc |
33386977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 33261612 - 33261510
Alignment:
| Q |
8 |
gcatccatgtcatccacagaaa-aaatctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
106 |
Q |
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|||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||| |||||||||||| |
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| T |
33261612 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccagattcacctgctgcagatgaagt |
33261513 |
T |
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| Q |
107 |
ttc |
109 |
Q |
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||| |
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| T |
33261512 |
ttc |
33261510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 33302983 - 33302888
Alignment:
| Q |
26 |
gaaaaaatctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc |
121 |
Q |
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| T |
33302983 |
gaaaaaatctcgaaccttcaaatcagccacagaaacggaagtatctgtggaggtacaagattcacctgttatcgatgaagtttctagtgaatctcc |
33302888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 33418554 - 33418459
Alignment:
| Q |
26 |
gaaaaaatctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc |
121 |
Q |
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||||||||||| ||| |||||||||||||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||| |
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| T |
33418554 |
gaaaaaatctcgaactttcatatcagccacagaaacggaagtatccgtggaggtacaagattcacctgttgccgatgaagtttctggtgaatctcc |
33418459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 5435 - 5268
Alignment:
| Q |
8 |
gcatccatgtcatccacagaaa-aaatctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
106 |
Q |
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|||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| | |||||||| | ||||| ||| |||||||||||||| ||||||| |
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| T |
5435 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaactgaagtatccgcggaggcaccgaattcacctgttgcaaatgaagt |
5336 |
T |
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| Q |
107 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
174 |
Q |
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|||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
5335 |
ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcaattcattggtcggttcc |
5268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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