View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0763_high_3 (Length: 378)

Name: NF0763_high_3
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0763_high_3
NF0763_high_3
[»] chr4 (7 HSPs)
chr4 (209-350)||(13848262-13848403)
chr4 (1-205)||(44420769-44420974)
chr4 (1-63)||(44429044-44429106)
chr4 (143-205)||(37500975-37501037)
chr4 (143-205)||(15333237-15333299)
chr4 (209-295)||(3743882-3743968)
chr4 (212-255)||(4446065-4446108)
[»] chr7 (4 HSPs)
chr7 (1-205)||(37617362-37617564)
chr7 (1-205)||(36828297-36828498)
chr7 (206-350)||(34343861-34344002)
chr7 (1-205)||(34500167-34500380)
[»] chr1 (6 HSPs)
chr1 (1-205)||(8114278-8114481)
chr1 (49-205)||(3170502-3170666)
chr1 (13-67)||(3170681-3170735)
chr1 (143-205)||(51739326-51739385)
chr1 (205-256)||(614783-614834)
chr1 (202-256)||(1481034-1481088)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-205)||(83474-83676)
[»] chr5 (6 HSPs)
chr5 (146-205)||(28171824-28171883)
chr5 (143-188)||(10203861-10203906)
chr5 (212-255)||(5143270-5143313)
chr5 (212-255)||(5815915-5815958)
chr5 (212-255)||(7627796-7627839)
chr5 (22-88)||(28661492-28661558)
[»] chr3 (3 HSPs)
chr3 (146-205)||(2993690-2993749)
chr3 (213-301)||(34823081-34823169)
chr3 (145-205)||(8337337-8337397)
[»] chr2 (4 HSPs)
chr2 (158-205)||(24836204-24836251)
chr2 (170-205)||(8149041-8149076)
chr2 (170-205)||(8153665-8153700)
chr2 (22-78)||(24836035-24836091)
[»] scaffold0526 (1 HSPs)
scaffold0526 (143-205)||(5129-5191)
[»] chr8 (4 HSPs)
chr8 (145-205)||(1061588-1061648)
chr8 (22-88)||(1061652-1061717)
chr8 (212-255)||(35532021-35532064)
chr8 (209-243)||(35532793-35532827)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 209 - 350
Target Start/End: Complemental strand, 13848403 - 13848262
Alignment:
Q  209 agcccctaatatggacctcaaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaacaaaaccttacat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13848403 agcccctaatatggacctcaaattaaagggaccatgagtgaacctcaacaaatgacctacactagccagtcatattttttgggaaaacaaaaccttacat 13848304  T
Q  309 cttcttaaaacactcaattcctccatcttctactttcatgtt 350  Q
    |||||| ||||||||||||||||||||||||||| |||||||    
T  13848303 cttcttcaaacactcaattcctccatcttctactgtcatgtt 13848262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 44420974 - 44420769
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataannnnnnnaagga 100  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  44420974 ttatctttaccaagaattttatttttaacggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaataatttttttaagga 44420875  T
Q  101 agccttaatgatccttatgtttgatattctttc-nnnnnnnnntcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaatt 199  Q
    |||||||||||| ||||||||||||||||||||          || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  44420874 agccttaatgattcttatgtttgatattctttcaaaaaaaaaatcgtatatttaatatattacttcatatatatattgatagttatttttctgacaaatt 44420775  T
Q  200 atttta 205  Q
    ||||||    
T  44420774 atttta 44420769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44429106 - 44429044
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatg 63  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  44429106 ttatctttaccaagaattttatttttaacggtaatttcctaactatactctctttttcaaatg 44429044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 37501037 - 37500975
Alignment:
Q  143 tcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    |||||||||||| |||||| ||||| ||||||||   ||||||||||||||||||||||||||    
T  37501037 tcttatatttaatatattaattcatctatattttagcagttatttttctgacaaattatttta 37500975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 15333299 - 15333237
Alignment:
Q  143 tcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    |||||||||||| |||||| ||||| ||||||||  ||||||| ||| |||||||||||||||    
T  15333299 tcttatatttaatatattaattcatctatattttagtagttatatttttgacaaattatttta 15333237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 3743882 - 3743968
Alignment:
Q  209 agcccctaatatggacctc-aaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaa 295  Q
    ||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||| || |  ||||| ||||||| |||| ||||||    
T  3743882 agcccctaatatggacccctaaattaaa-ggaccatgggtgaacctcaacaaatgatctgctgtagccggtcatatcttttaggaaaa 3743968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 4446108 - 4446065
Alignment:
Q  212 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 255  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  4446108 ccctaatatggacctcaatttaaagggaccattggtgaacctca 4446065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37617362 - 37617564
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataannnnnnnaagga 100  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  37617362 ttatctttaccaagaattttatttttaacggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaat---tttttgaagga 37617458  T
Q  101 agccttaatgatccttatgtttgatattctttc-nnnnnnnnntcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaatt 199  Q
    |||||||||||||||||||||||||||||||||          || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37617459 agccttaatgatccttatgtttgatattctttcaaaaaaaaaatcgtatatttaatatattacttcatatatattttgatagttatttttctgacaaatt 37617558  T
Q  200 atttta 205  Q
    ||||||    
T  37617559 atttta 37617564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 36828498 - 36828297
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataannnnnnnaagga 100  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  36828498 ttatctttaccaagaattttatttttgacggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaat---tttttgaagga 36828402  T
Q  101 agccttaatgatccttatgtttgatattctttcnnnnnnnnntcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaatta 200  Q
    |||||||||||||||||||||||||||||||||         |  ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  36828401 agccttaatgatccttatgtttgatattctttcaaaaaaaaattgtatatttaatatattacttcatatatattttgatagttattttttcgacaaatta 36828302  T
Q  201 tttta 205  Q
    |||||    
T  36828301 tttta 36828297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 34344002 - 34343861
Alignment:
Q  206 ggaagcccctaatatggacctcaaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaacaaaacctta 305  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||    
T  34344002 ggaagcccttaatatgaacctcaaattaaagggaccatgagtgaacctcaacaaatgacctacacta---agtcatattttttgggaaaacaaaacctta 34343906  T
Q  306 catcttcttaaaacactcaattcctccatcttctactttcatgtt 350  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  34343905 catcttcttcaaacactcaattcctccatcttctactgtcatgtt 34343861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 34500380 - 34500167
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatg--------atttgattgtctttagccttaataannnn 92  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||||||||||||||        
T  34500380 ttatctttaccaagaattttatttttaacggtaatttcctaactatactctctttttcaaatgttcaaatgatttgattgtctttagccttaataatttt 34500281  T
Q  93 nnnaaggaagccttaatgatccttatgtttgatattctttcnnnnnnnnn-tcttatatttaaaatattacttcatatatattttgatagttatttttct 191  Q
       ||||||||||||||||| ||||||||||||||||||||          || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  34500280 tttaaggaagccttaatgattcttatgtttgatattctttcaaaaaaaaaatcgtatatttaatatattacttcatatatattttgatagttatttttct 34500181  T
Q  192 gacaaattatttta 205  Q
    ||||||||||||||    
T  34500180 gacaaattatttta 34500167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 8114278 - 8114481
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataannnnnnnaagga 100  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  8114278 ttatctttaccaagaattttatttttaacggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaat--ttttttgaagga 8114375  T
Q  101 agccttaatgatccttatgtttgatattctttc-nnnnnnnnntcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaatt 199  Q
    |||||||||||||||||||||||||||||||||          || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8114376 agccttaatgatccttatgtttgatattctttcaaaaaaaaaatcgtatatttaatatattacttcatatatattttgatagttatttttctgacaaatt 8114475  T
Q  200 atttta 205  Q
    ||||||    
T  8114476 atttta 8114481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 3170666 - 3170502
Alignment:
Q  49 tctctttttcaaatgatttgattgtcttt----agccttaataannnnnnnaaggaagccttaatgatccttatgtttgatattctttcnnnnnnnnn-- 142  Q
    |||||||||||||||||||||||||||||    |||||||||||       ||||||||||||||||||||||||||||||||||||||               
T  3170666 tctctttttcaaatgatttgattgtctttctttagccttaataatttttataaggaagccttaatgatccttatgtttgatattctttcaaaaaaaaaaa 3170567  T
Q  143 --tcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
      |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3170566 aatcttatatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 3170502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 3170735 - 3170681
Alignment:
Q  13 agaatattatttttaacggtaattttctaactatactctctttttcaaatgattt 67  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  3170735 agaattttatttttaacggtaatttcctaacgatactctctttttcaaatgattt 3170681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 51739326 - 51739385
Alignment:
Q  143 tcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    |||||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||    
T  51739326 tcttatatttaatatattaattcatatatatttt---agttatttttctgacaaattatttta 51739385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 614834 - 614783
Alignment:
Q  205 aggaagcccctaatatggacctcaaattaaagggaccatgagtgaacctcaa 256  Q
    |||||||| ||||||| |||||||| |||||||||||||||||  |||||||    
T  614834 aggaagcctctaatatagacctcaatttaaagggaccatgagtagacctcaa 614783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 1481034 - 1481088
Alignment:
Q  202 tttaggaagcccctaatatggacctcaaattaaagggaccatgagtgaacctcaa 256  Q
    |||||| ||| ||||||||||||||||||||||| ||||||  | ||||||||||    
T  1481034 tttagggagctcctaatatggacctcaaattaaaaggaccaccaatgaacctcaa 1481088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 83474 - 83676
Alignment:
Q  1 ttatctttaccaagaatattatttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataannnnnnnaagga 100  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  83474 ttatctttaccaataattttatttttaacggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaat---tttttgaagga 83570  T
Q  101 agccttaatgatccttatgtttgatattctttc-nnnnnnnnntcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaatt 199  Q
    |||||||||||||||||||||||||||||||||          || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  83571 agccttaatgatccttatgtttgatattctttcaaaaaaaaaatcgtatatttaatatattacttcatatatattttgatagttatttttctgacaaatt 83670  T
Q  200 atttta 205  Q
    ||||||    
T  83671 atttta 83676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 28171824 - 28171883
Alignment:
Q  146 tatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28171824 tatatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 28171883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 10203861 - 10203906
Alignment:
Q  143 tcttatatttaaaatattacttcatatatattttgatagttatttt 188  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||    
T  10203861 tcttatatttaatatattacttcatatatattttaatagttttttt 10203906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 5143313 - 5143270
Alignment:
Q  212 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 255  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  5143313 ccctaatatggacctcaatttaaagggaccattggtgaacctca 5143270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 5815915 - 5815958
Alignment:
Q  212 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 255  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  5815915 ccctaatatggacctcaatttaaagggaccattggtgaacctca 5815958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 7627839 - 7627796
Alignment:
Q  212 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 255  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  7627839 ccctaatatggacctcaatttaaagggaccattggtgaacctca 7627796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 28661558 - 28661492
Alignment:
Q  22 tttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataa 88  Q
    ||||||||  |||||| |||| | |||||||| ||| |||| |||||||||| ||||||||||||||    
T  28661558 tttttaactctaatttgctaagtgtactctctattttaaattatttgattgtttttagccttaataa 28661492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 2993749 - 2993690
Alignment:
Q  146 tatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2993749 tatatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 2993690  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 34823169 - 34823081
Alignment:
Q  213 cctaatatggacctcaaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaacaaaac 301  Q
    ||||||||||||| |||| | || ||| |||||||||||||||| ||||||||| | |||||| ||||||| |||| |||||| |||||    
T  34823169 cctaatatggaccccaaaattaaaggatcatgagtgaacctcaacaaatgacctgctctagccggtcatatcttttaggaaaaaaaaac 34823081  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 8337337 - 8337397
Alignment:
Q  145 ttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    |||||||||| |||||| ||||| ||||||||  ||||||||||||||| |||||||||||    
T  8337337 ttatatttaatatattaattcatctatattttagtagttatttttctgaaaaattatttta 8337397  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 24836204 - 24836251
Alignment:
Q  158 attacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24836204 attacttcatatatattttgatagttatttttctgacaaattatttta 24836251  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 8149041 - 8149076
Alignment:
Q  170 atattttgatagttatttttctgacaaattatttta 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  8149041 atattttgatagttatttttctgacaaattatttta 8149076  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 8153665 - 8153700
Alignment:
Q  170 atattttgatagttatttttctgacaaattatttta 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  8153665 atattttgatagttatttttctgacaaattatttta 8153700  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 24836035 - 24836091
Alignment:
Q  22 tttttaacggtaattttctaactatactctctttttcaaatgatttgattgtcttta 78  Q
    |||||||||||||||| || | ||||||||||| || ||||||||||| ||| ||||    
T  24836035 tttttaacggtaatttgcttagtatactctcttctttaaatgatttgactgttttta 24836091  T

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Target: scaffold0526 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 5129 - 5191
Alignment:
Q  143 tcttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    |||||||||||| |||||| ||||| ||||||||  ||||||||||||| |||||||||||||    
T  5129 tcttatatttaatatattaattcatctatattttagtagttatttttctaacaaattatttta 5191  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 1061648 - 1061588
Alignment:
Q  145 ttatatttaaaatattacttcatatatattttgatagttatttttctgacaaattatttta 205  Q
    |||||||||| ||||||||||||  |||||||  |||||||||||| ||||||||||||||    
T  1061648 ttatatttaatatattacttcattgatattttattagttatttttcggacaaattatttta 1061588  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 1061717 - 1061652
Alignment:
Q  22 tttttaacggtaattttctaactatactctctttttcaaatgatttgattgtctttagccttaataa 88  Q
    ||||||| | |||||| |||| ||||||||||||||| | |||||||||||| ||||||||||||||    
T  1061717 tttttaatgctaatttgctaagtatactctctttttcgattgatttgattgt-tttagccttaataa 1061652  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 35532021 - 35532064
Alignment:
Q  212 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 255  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  35532021 ccctaatatggacctcaatttaaagggaccattggtgaacctca 35532064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 35532827 - 35532793
Alignment:
Q  209 agcccctaatatggacctcaaattaaagggaccat 243  Q
    ||||||||||||||||||||| |||||||||||||    
T  35532827 agcccctaatatggacctcaatttaaagggaccat 35532793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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