View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0763_low_11 (Length: 358)

Name: NF0763_low_11
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0763_low_11
NF0763_low_11
[»] chr4 (4 HSPs)
chr4 (5-338)||(23062154-23062487)
chr4 (1-327)||(32880670-32880983)
chr4 (184-269)||(43992238-43992323)
chr4 (187-281)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (1-338)||(28592757-28593093)
[»] chr6 (3 HSPs)
chr6 (1-338)||(25907152-25907489)
chr6 (49-125)||(13108960-13109035)
chr6 (160-263)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (1-338)||(21279152-21279489)
chr8 (156-265)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (1-197)||(30302015-30302210)
chr5 (181-227)||(14779531-14779577)
chr5 (187-263)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (1-281)||(9817002-9817282)
chr7 (1-281)||(10718927-10719207)
chr7 (56-200)||(20483935-20484079)
chr7 (181-269)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (55-281)||(15229641-15229866)
chr1 (149-278)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (163-265)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (156-265)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (157-263)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 338
Target Start/End: Original strand, 23062154 - 23062487
Alignment:
Q  5 cagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactcatgcc 104  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23062154 cagacacaactttttctattatattaacaaccggtgcacgagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactcatgcc 23062253  T
Q  105 ttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23062254 ttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattc 23062353  T
Q  205 aagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaaca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23062354 aagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaaca 23062453  T
Q  305 aactaggatcagccgcagcccctttactccgaca 338  Q
    |||||||||||||||||||||||| |||| ||||    
T  23062454 aactaggatcagccgcagccccttgactctgaca 23062487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 32880983 - 32880670
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32880983 tcatcagacacaactttttctattatattaacaaccggtgcacgagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgacgca 32880884  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  32880883 tgccttgttcatcagcaattcgtaccccttcattattatccaaaacattaatgcggtttaccttctttcttgacgtggttgaagcatgaaaatatttggt 32880784  T
Q  201 attcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtc 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||             ||||||||||||||    
T  32880783 attcaagtcaccatcatgataccagtgtgtctttgctcgctgtcacccatacttatcctcttgaatcatcaaa-------------tgcgcaagtttgtc 32880697  T
Q  301 aacaaactaggatcagccgcagcccct 327  Q
    ||||||||||||| |||||||||||||    
T  32880696 aacaaactaggataagccgcagcccct 32880670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 43992238 - 43992323
Alignment:
Q  184 gcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 269  Q
    ||||||||||| || ||||| || ||||||||||||||||| || || |||||||  |||| ||||||||||||||||||||||||    
T  43992238 gcatgaaaaaaatttgtatttaaatcaccatcacgataccaatgagtttttgctctttgtctccaatacttatcctcttgaatcat 43992323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 19318834 - 19318928
Alignment:
Q  187 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 281  Q
    ||||||||||| || || |  ||||||||||| ||||||||  | ||||| || ||||||||||| ||||||||||| |||||||| || |||||    
T  19318834 tgaaaaaatttcgtgtttagatcaccatcacggtaccagtgaatttttgcacgttgtcgccaatatttatcctcttgtatcatcaactgagtcat 19318928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 28592757 - 28593093
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592757 tcatcagacacaactttttctattatattaacaaccggtgcacgagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 28592856  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28592857 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttatcttctttcttgacgtggctgaagcatgaaaaaatttggt 28592956  T
Q  201 attcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28592957 attcaagtcaccatcacgataccagtgtgtctttgctcgttgtcgccaatacttatcctcttgaat-atcaaatgtgtcatgcgtttgcgcaagtttgtc 28593055  T
Q  301 aacaaactaggatcagccgcagcccctttactccgaca 338  Q
    |||||||||||||||||||||||||||| |||||||||    
T  28593056 aacaaactaggatcagccgcagccccttgactccgaca 28593093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 25907152 - 25907489
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25907152 tcatcagacacaactttttctattatattaacaaccggtgcacgagtactattgctctctaaaaataaagtctcaaaatattcttttgccacctgactca 25907251  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  25907252 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacatggctgaagcatgaagaaatttggt 25907351  T
Q  201 attcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25907352 attcaagtcaccatcacgatacaagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtc 25907451  T
Q  301 aacaaactaggatcagccgcagcccctttactccgaca 338  Q
    ||||||||||||||||||||| |||||  |||||||||    
T  25907452 aacaaactaggatcagccgcaacccctcgactccgaca 25907489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 13108960 - 13109035
Alignment:
Q  49 ctattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactcatgccttgttcatcagcaattcgtac 125  Q
    ||||| ||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  13108960 ctattactctctaaaaataaagtttcaaaatattcttt-gcaatctgacgcatgccttgttcatcagcaattcgtac 13109035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 21695952 - 21695849
Alignment:
Q  160 accttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcct 259  Q
    |||||||||||||| || ||||  |||||||| ||| | |||||||| || ||||||||||||||||| || || ||||  |||| ||| ||| ||||||    
T  21695952 accttctttcttgaagttgctgccgcatgaaagaatctcgtattcaaatctccatcacgataccagtgagttttggctctttgtcaccagtacatatcct 21695853  T
Q  260 cttg 263  Q
    ||||    
T  21695852 cttg 21695849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 21279152 - 21279489
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||| |||||| ||||||||||||||  |||| |||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||    
T  21279152 tcatcaaacacaaatttttctattatatctacaaccggtgcaggagtactattactctctaaaaataaagtgtcaaaatattcttttgcaacctgacaca 21279251  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    |||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||   ||| ||    
T  21279252 tgccttgttcatcagcaactcgtacccgttcatcattatccagaaaattaatgtggtttaccttctttcttgatgtggctgatgcatgaaatttttttgt 21279351  T
Q  201 attcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtc 300  Q
    ||||| |||||||||||||||||| |||||||| ||||| || |||||||| ||||| |||||||||||||| || ||||||||||| ||||||||||||    
T  21279352 attcacgtcaccatcacgataccaatgtgtcttagctcgttgccgccaatagttatcttcttgaatcatcaattgcgtcatgcgtttccgcaagtttgtc 21279451  T
Q  301 aacaaactaggatcagccgcagcccctttactccgaca 338  Q
    || |||||||||||| |||||||||||| |||||||||    
T  21279452 aaaaaactaggatcaaccgcagccccttgactccgaca 21279489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 28164880 - 28164989
Alignment:
Q  156 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 255  Q
    |||||| |||||||| || || || |||||||| || | |||||| || | ||| |||||||||||||||||||| || |||| ||||| ||||||| ||    
T  28164880 gtttactttctttctggaggttgcggaagcatggaagattttggtgtttaggtctccatcacgataccagtgtgttttagctctctgtctccaatacata 28164979  T
Q  256 tcctcttgaa 265  Q
    ||||||||||    
T  28164980 tcctcttgaa 28164989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30302210 - 30302015
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30302210 tcatcagacacaactttttctattatattaccaaccggtgcacgagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 30302111  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaattt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30302110 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttacc-tctttcttgacgtggctgaagcatgaaaaaattt 30302015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 14779577 - 14779531
Alignment:
Q  181 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtg 227  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||||    
T  14779577 gaagcataaaaaaaattggtgttcaagtccccatcacgataccagtg 14779531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 20584800 - 20584724
Alignment:
Q  187 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttg 263  Q
    ||||| ||||| || |||||||  ||||| ||||||||||| || || ||||  |||||||||||| ||||||||||    
T  20584800 tgaaagaatttcgtgttcaagtatccatcgcgataccagtgagttttggctctttgtcgccaatacatatcctcttg 20584724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 9817002 - 9817282
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||||| |||||||||||||| || |  |||| |||||||| |||  |||| ||||| |||||||| |||||||||||  ||||||||||||||| ||    
T  9817002 tcatcagaaacaactttttctataatgtctacaaccggtgcacgagtgatattactctccaaaaataatgtctcaaaatacccttttgcaacctgacaca 9817101  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    | ||||| ||||| | || ||  |||||  ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| ||    
T  9817102 taccttgctcatctgaaactctgacccccacatcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagt 9817201  T
Q  201 attcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 281  Q
     || | ||||||||||||||||||||| ||||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
T  9817202 gttaaggtcaccatcacgataccagtgagtcttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 9817282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 10718927 - 10719207
Alignment:
Q  1 tcatcagacacaactttttctattatattaacaatcggtgcacaagtactattgctctctaaaaataaagtctcaaaatattcttttgcaacctgactca 100  Q
    |||||||| |||||||||||||| || |  |||| |||||||| |||  |||| ||||| |||||||| |||||||||||  ||||||||||||||| ||    
T  10718927 tcatcagaaacaactttttctataatgtctacaaccggtgcacgagtgatattactctccaaaaataatgtctcaaaatacccttttgcaacctgacaca 10719026  T
Q  101 tgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    | ||||| ||||| | || ||  |||||  ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| ||    
T  10719027 taccttgctcatctgaaactctgacccccacatcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagt 10719126  T
Q  201 attcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 281  Q
     || | ||||||||||||||||||||| ||||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
T  10719127 gttaaggtcaccatcacgataccagtgagtcttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 10719207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 20484079 - 20483935
Alignment:
Q  56 tctctaaaaataaagtctcaaaatattcttttgcaacctgactcatgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgcg 155  Q
    |||| ||||||||| || ||||||| ||||| || ||||||| ||| || |||||||||| ||| |  | |||  ||||||| ||||   |  | || ||    
T  20484079 tctccaaaaataaattcgcaaaataatctttcgctacctgacacattccatgttcatcagaaatacaaatccccacatcattttccagggaggtgatacg 20483980  T
Q  156 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 200  Q
    ||||||||| |||||  ||||||| ||||||||||||||||||||    
T  20483979 gtttaccttttttctaaacgtggcagaagcatgaaaaaatttggt 20483935  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 21115520 - 21115432
Alignment:
Q  181 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 269  Q
    |||||||||||||| || || || |  ||||||||||||||||| || || || || ||||| |||||||| ||||| ||||| |||||    
T  21115520 gaagcatgaaaaaacttcgtgtttagatcaccatcacgataccaatgagttttcgcacgctgacgccaatatttatcttcttgtatcat 21115432  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 15229866 - 15229641
Alignment:
Q  55 ctctctaaaaataaagtctcaaaatattcttttgcaacctgactcatgccttgttcatcagcaattcgtaccccttcatcattatccaaaaaattaatgc 154  Q
    ||||| |||||||| || ||||||||  |||| |||||||  | ||| ||||||||||| | || ||| || ||  ||||||| |||||||||||||| |    
T  15229866 ctctccaaaaataatgtttcaaaataccctttagcaacctagcgcataccttgttcatctgaaactcggactcccacatcattttccaaaaaattaatac 15229767  T
Q  155 ggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactt 254  Q
    |||||||||| ||||  || ||||||||||||| ||    ||| ||||| | |||||||| ||| ||||| || ||||| || ||||| |||||||||||    
T  15229766 ggtttaccttttttcaagatgtggctgaagcatcaatttttttagtattaaggtcaccat-acggtaccaatgagtcttagcacgctgccgccaatactt 15229668  T
Q  255 atcctcttgaatcatcaaatgtgtcat 281  Q
    |||||||||||| ||||| || |||||    
T  15229667 atcctcttgaataatcaagtgcgtcat 15229641  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 10505307 - 10505436
Alignment:
Q  149 taatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgcca 248  Q
    ||||| |||||||||||||| | || ||||  || |||||||||||||| |||||||  || ||| |||||||||| ||  |||| ||||| || | |||    
T  10505307 taatgtggtttaccttctttttagatgtggtagaggcatgaaaaaatttagtattcatatcgccaacacgataccaatggatcttggctcgttgcctcca 10505406  T
Q  249 atacttatcctcttgaatcatcaaatgtgt 278  Q
    ||| ||||| ||||||||||||| ||||||    
T  10505407 atatttatcttcttgaatcatcagatgtgt 10505436  T

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Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 438 - 540
Alignment:
Q  163 ttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctctt 262  Q
    |||||||| || || || ||||||||||| ||||||||||| | ||| |||||||| |||||||||||||| |||| ||| | ||||||| | || ||||    
T  438 ttctttctggaggttgcggaagcatgaaagaatttggtattaaggtctccatcacggtaccagtgtgtcttagctctctgcctccaatacatgtcttctt 537  T
Q  263 gaa 265  Q
    |||    
T  538 gaa 540  T

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Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 26706 - 26815
Alignment:
Q  156 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 255  Q
    |||||| |||||||  || || || ||||| || || ||||||||||| | ||| |||||||||||||||||||| || |||| ||| | ||||||| ||    
T  26706 gtttactttctttcaggaggttgcggaagcgtggaagaatttggtatttaggtctccatcacgataccagtgtgttttagctctctgcctccaatacata 26805  T
Q  256 tcctcttgaa 265  Q
    || |||||||    
T  26806 tcttcttgaa 26815  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 34932284 - 34932178
Alignment:
Q  157 tttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttat 256  Q
    ||||| |||||||| || || || || ||||| || ||||| || |||| ||| |||||||||||| |||| || || |||| ||||| ||||||| |||    
T  34932284 tttactttctttctggaggttgcggacgcatggaagaattttgtgttcaggtctccatcacgatacaagtgcgttttagctctctgtctccaatacatat 34932185  T
Q  257 cctcttg 263  Q
    |||||||    
T  34932184 cctcttg 34932178  T

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