View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0763_low_21 (Length: 267)

Name: NF0763_low_21
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0763_low_21
NF0763_low_21
[»] chr1 (19 HSPs)
chr1 (1-246)||(35216950-35217199)
chr1 (1-224)||(35206425-35206653)
chr1 (29-246)||(35213561-35213779)
chr1 (1-235)||(35145217-35145449)
chr1 (55-224)||(45526202-45526373)
chr1 (123-226)||(35295158-35295261)
chr1 (157-235)||(35203170-35203248)
chr1 (157-246)||(35476973-35477062)
chr1 (163-245)||(35192820-35192902)
chr1 (154-246)||(35222767-35222859)
chr1 (157-244)||(45534386-45534473)
chr1 (162-224)||(8640315-8640377)
chr1 (153-227)||(35253933-35254007)
chr1 (53-133)||(35194749-35194832)
chr1 (154-223)||(35272922-35272991)
chr1 (154-230)||(43638094-43638171)
chr1 (160-223)||(35265360-35265423)
chr1 (178-226)||(19267381-19267429)
chr1 (163-223)||(35228446-35228506)
[»] chr2 (1 HSPs)
chr2 (154-231)||(33137636-33137713)
[»] chr3 (3 HSPs)
chr3 (155-243)||(898918-899006)
chr3 (154-231)||(17663857-17663934)
chr3 (154-231)||(19246358-19246435)
[»] chr7 (2 HSPs)
chr7 (178-230)||(38635321-38635373)
chr7 (178-231)||(38633573-38633626)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 35217199 - 35216950
Alignment:
Q  1 aaagaaaatagtgaaaccgttagtttaataaaaa---acttaaggcagatgctaatattttctacagctacatacgaatactcaattgattgttgtaaaa 97  Q
    |||||| ||||||||||| |||||||||||||||   | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35217199 aaagaatatagtgaaaccattagtttaataaaaacttaattaaggcagatgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaa 35217100  T
Q  98 tat-ttgtgatttttgaaatgcttaattcaaaatgctaataataaactttggaaatattgaaattcagagctttcaattgtatagaaaaagtggaaaaaa 196  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||| ||||||| |||||||||||    
T  35217099 tatattgtgatttttgaaatgcttaattcaaaatgctaataataagctttggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaa 35217000  T
Q  197 ttgttacatgcttgctgctagatctctcaccattgcttgcgatgatgatg 246  Q
     |||||||||||| |||||||||||||| |||||||||||| ||||||||    
T  35216999 gtgttacatgctttctgctagatctctctccattgcttgcggtgatgatg 35216950  T

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Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 35206653 - 35206425
Alignment:
Q  1 aaagaaaatagtgaaaccgttagtttaataaaaaacttaa----ggcagatgctaatattttctacagctacatacgaatactcaattgattgttgtaaa 96  Q
    |||||||||||||||||| |||||||||||||||||||||    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  35206653 aaagaaaatagtgaaaccattagtttaataaaaaacttaattaaggcagatgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaa 35206554  T
Q  97 atat-ttgtgatttttgaaatgcttaattcaaaatgctaataataaactttggaaatattgaaattcagagctttcaattgtatagaaaaagtggaaaaa 195  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||| ||||||| ||||||||||    
T  35206553 atatattgtgatttttgaaatgcttaattcaaaatgctaataataagctttggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaa 35206454  T
Q  196 attgttacatgcttgctgctagatctctc 224  Q
    | |||||||||||| ||||||||||||||    
T  35206453 agtgttacatgctttctgctagatctctc 35206425  T

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Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 35213779 - 35213561
Alignment:
Q  29 taaaaaacttaaggcagatgctaatattttctacagctacatacgaatactcaattgattgttgtaaaatat-ttgtgatttttgaaatgcttaattcaa 127  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| ||||     
T  35213779 taaaaaacttaaggcagatgccaacattttctacatctacatacgaatgctcagttgattgttataaaatatattgtgatttttgaaatgcttagttcag 35213680  T
Q  128 aatgctaataataaactttggaaatattgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcacc 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||  |    
T  35213679 aatgctaataataaactttggaaatattgaaatgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctcggc 35213580  T
Q  228 attgcttgcgatgatgatg 246  Q
    |||||||| | ||||||||    
T  35213579 attgcttggggtgatgatg 35213561  T

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Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35145449 - 35145217
Alignment:
Q  1 aaagaaaatagtgaaaccgttagtttaataaaaaacttaaggcagatgctaatattttctacagctacatacgaatactcaattgattgttgtaaaatat 100  Q
    |||||||||||||||||| ||||||| | ||| ||   ||||| ||||| ||||||||||| | | ||||| |||| |||||||||||||||||||||||    
T  35145449 aaagaaaatagtgaaaccattagtttgaaaaacaa---aaggctgatgccaatattttctagaacaacataagaatgctcaattgattgttgtaaaatat 35145353  T
Q  101 -ttgtgatttttgaaatgcttaattcaaaatgctaataataaactttggaaatattgaaattcagagctttcaattgtatagaaaaagtggaaaaaattg 199  Q
     |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||||| ||||| | ||| ||||||| ||    
T  35145352 attgtgatttttgaaatgcttaattcagaatgctaataataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtg 35145253  T
Q  200 ttacatgcttgctgctagatctctcaccattgcttg 235  Q
    ||||||| || |||||||||||||| ||||||||||    
T  35145252 ttacatggtttctgctagatctctcgccattgcttg 35145217  T

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Target: chr1; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 45526373 - 45526202
Alignment:
Q  55 ttttctacagctacatacgaatactcaattgattgttgtaaaatatttg-tgatttttgaaatgcttaattcaaaatgctaataataaacttt--ggaaa 151  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||| || | |||||| ||||||||| |||| ||||||||| |||| | ||  ||  |    
T  45526373 ttttctacagttacatac-aatgctcaattgattgttgtaaaatatatggttattttttaaatgcttagttcagaatgctaatcataagccttctgggta 45526275  T
Q  152 tattgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctc 224  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  45526274 tattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 45526202  T

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Target: chr1; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 35295158 - 35295261
Alignment:
Q  123 ttcaaaatgctaataataaactttggaaatattgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctc 222  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||| ||||| |||||||||||||||||||    
T  35295158 ttcaaaatgctaataataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctc 35295257  T
Q  223 tcac 226  Q
    ||||    
T  35295258 tcac 35295261  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 35203248 - 35203170
Alignment:
Q  157 aaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattgcttg 235  Q
    |||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  35203248 aaatgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctccattgcttg 35203170  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 35477062 - 35476973
Alignment:
Q  157 aaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattgcttgcgatgatgatg 246  Q
    |||| |||||| |||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  35477062 aaatgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctcgccattgcttggggtgatgatg 35476973  T

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Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 35192902 - 35192820
Alignment:
Q  163 agagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattgcttgcgatgatgat 245  Q
    |||||||||||||| |||| || ||||||||||| ||||| ||||||||||||||||||||| |||||||||| | |||||||    
T  35192902 agagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgat 35192820  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 35222859 - 35222767
Alignment:
Q  154 ttgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattgcttgcgatgatgatg 246  Q
    |||||||| ||||| |||||||| ||||||| ||||||||||| |||  ||||||||||||||||||||||  ||||| ||| ||||||||||    
T  35222859 ttgaaattaagagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctcgacattgattgggatgatgatg 35222767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 45534473 - 45534386
Alignment:
Q  157 aaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattgcttgcgatgatga 244  Q
    |||| ||||||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||| |||| | ||||||    
T  45534473 aaatgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctcgccattacttggggtgatga 45534386  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 8640377 - 8640315
Alignment:
Q  162 cagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctc 224  Q
    |||||| |||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||    
T  8640377 cagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 35254007 - 35253933
Alignment:
Q  153 attgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcacc 227  Q
    |||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||| ||| | | || |||||||||    
T  35254007 attgaaatgcagagttttcaattggatagaaagagtggaaaaaattgttacatgattgattcaaggtctctcacc 35253933  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 35194832 - 35194749
Alignment:
Q  53 tattttctacagctacatacgaatactcaattgattgttgtaaaatat---ttgtgatttttgaaatgcttaattcaaaatgct 133  Q
    |||||| ||||||| ||||||||| |||||||||||| ||||||||||   ||||||||||||| ||| ||| |||| ||||||    
T  35194832 tattttttacagcttcatacgaatgctcaattgattgatgtaaaatatatattgtgatttttgatatgtttagttcagaatgct 35194749  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 35272991 - 35272922
Alignment:
Q  154 ttgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctct 223  Q
    ||||||| |||||| |||||||  | ||||| ||||||||||| |||||||||||| |||||||||||||    
T  35272991 ttgaaatgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 43638094 - 43638171
Alignment:
Q  154 ttgaaattcagagctttcaattgtatagaaaa-agtggaaaaaattgttacatgcttgctgctagatctctcaccatt 230  Q
    ||||||| ||||||||||||||  |||||||| |||||||||  |||||||||| || ||||||||| ||||||||||    
T  43638094 ttgaaatgcagagctttcaatttgatagaaaatagtggaaaattttgttacatgatttctgctagatttctcaccatt 43638171  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 35265423 - 35265360
Alignment:
Q  160 ttcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctct 223  Q
    ||||||| || |||||| | ||||| ||||||||||| |||||||||||| |||||||||||||    
T  35265423 ttcagagtttccaattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 19267381 - 19267429
Alignment:
Q  178 atagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcac 226  Q
    ||||||| | ||||||||| |||||||| ||||||||||||||||||||    
T  19267381 atagaaataatggaaaaaagtgttacattcttgctgctagatctctcac 19267429  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 35228506 - 35228446
Alignment:
Q  163 agagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctct 223  Q
    |||| ||||||||| | ||||| |||||||| || ||||| |||||| |||||||||||||    
T  35228506 agagttttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctct 35228446  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 33137636 - 33137713
Alignment:
Q  154 ttgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattg 231  Q
    ||||||| ||||||||||||||| | ||||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  33137636 ttgaaatgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctcaccattg 33137713  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 898918 - 899006
Alignment:
Q  155 tgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattgcttgcgatgatg 243  Q
    |||||||||||||||| ||||| |||| |||||||||||||  ||||||||||||||||| |||||||||||||||  ||||| |||||    
T  898918 tgaaattcagagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctcaccattcattgcggtgatg 899006  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 17663857 - 17663934
Alignment:
Q  154 ttgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattg 231  Q
    ||||||| ||||||||||||||| | ||||| |||||| | || |||||| |||||||||||||||||||||||||||    
T  17663857 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattg 17663934  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 19246358 - 19246435
Alignment:
Q  154 ttgaaattcagagctttcaattgtatagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattg 231  Q
    ||||||| ||||||||||||||| | ||||| |||||| | || |||||| |||||||||||||||||||||||||||    
T  19246358 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattg 19246435  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 38635373 - 38635321
Alignment:
Q  178 atagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccatt 230  Q
    ||||||| ||||||||||| |||||||| |||||||||| |||||||| ||||    
T  38635373 atagaaagagtggaaaaaagtgttacattcttgctgctaaatctctcatcatt 38635321  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 38633626 - 38633573
Alignment:
Q  178 atagaaaaagtggaaaaaattgttacatgcttgctgctagatctctcaccattg 231  Q
    ||||||| ||||||||||| |||| ||| |||||||||| |||||||| |||||    
T  38633626 atagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctcagcattg 38633573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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