View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0763_low_22 (Length: 263)

Name: NF0763_low_22
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0763_low_22
NF0763_low_22
[»] chr2 (1 HSPs)
chr2 (21-231)||(32252093-32252303)
[»] chr5 (6 HSPs)
chr5 (23-231)||(24615319-24615532)
chr5 (23-231)||(24711717-24711930)
chr5 (23-231)||(24744713-24744926)
chr5 (23-231)||(24757479-24757692)
chr5 (29-73)||(13935768-13935812)
chr5 (23-75)||(24832035-24832087)
[»] scaffold0166 (1 HSPs)
scaffold0166 (23-187)||(2-171)
[»] chr6 (2 HSPs)
chr6 (23-213)||(9190957-9191144)
chr6 (146-230)||(8403921-8404005)
[»] chr7 (2 HSPs)
chr7 (23-149)||(37945832-37945961)
chr7 (41-89)||(4531774-4531824)
[»] chr1 (1 HSPs)
chr1 (24-75)||(1567073-1567124)
[»] chr3 (1 HSPs)
chr3 (23-75)||(14481635-14481687)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 32252093 - 32252303
Alignment:
Q  21 gagatgaagaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32252093 gagatgaggaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaataaataaatgcggtgagaaacaatgtttatattataatga 32252192  T
Q  121 tgaagagagtaatgagggttaaattatgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggag 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252193 tgaagagagtaatgagggttaaattatgacgatgaggacgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggag 32252292  T
Q  221 agagatgatgt 231  Q
    |||||||||||    
T  32252293 agagatgatgt 32252303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 24615532 - 24615319
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||| ||||| ||||||| |||||| |||||||||  |||||||||  |||||||||||||||||||| || |  ||||||||||||||||||||| |     
T  24615532 gatgaggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacga 24615433  T
Q  121 tgaagagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggg 217  Q
    ||| ||||||||||| ||||||||||   ||| ||||||||||| ||||||||||||||| |||| |||| |||||  |||||||||||||||||||||     
T  24615432 tgaggagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatgga 24615333  T
Q  218 gagagagatgatgt 231  Q
    |||||| |||||||    
T  24615332 gagagaaatgatgt 24615319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 24711930 - 24711717
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||| ||||| ||||||| |||||| |||||||||  |||||||||  |||||||||||||||||||| || |  ||||||||||||||||||||| |     
T  24711930 gatgaggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacga 24711831  T
Q  121 tgaagagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggg 217  Q
    ||| ||||||||||| ||||||||||   ||| ||||||||||| ||||||||||||||| |||| |||| |||||  |||||||||||||||||||||     
T  24711830 tgaggagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatgga 24711731  T
Q  218 gagagagatgatgt 231  Q
    |||||| |||||||    
T  24711730 gagagaaatgatgt 24711717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 24744926 - 24744713
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||| ||||| ||||||| |||||| |||||||||  |||||||||  |||||||||||||||||||| || |  ||||||||||||||||||||| |     
T  24744926 gatgaggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacga 24744827  T
Q  121 tgaagagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggg 217  Q
    ||| ||||||||||| ||||||||||   ||| ||||||||||| ||||||||||||||| |||| |||| |||||  |||||||||||||||||||||     
T  24744826 tgaggagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatgga 24744727  T
Q  218 gagagagatgatgt 231  Q
    |||||| |||||||    
T  24744726 gagagaaatgatgt 24744713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 24757692 - 24757479
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||| ||||| ||||||| |||||| |||||||||  |||||||||  |||||||||||||||||||| || |  ||||||||||||||||||||| |     
T  24757692 gatgaggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacga 24757593  T
Q  121 tgaagagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggg 217  Q
    ||| ||||||||||| ||||||||||   ||| ||||||||||| ||||||||||||||| |||| |||| |||||  |||||||||||||||||||||     
T  24757592 tgaggagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatgga 24757493  T
Q  218 gagagagatgatgt 231  Q
    |||||| |||||||    
T  24757492 gagagaaatgatgt 24757479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 13935812 - 13935768
Alignment:
Q  29 gaatcctataattgtgacaaagagtgatgacaattgatattatat 73  Q
    |||||||||||  |||||||||||||||||||||||||| |||||    
T  13935812 gaatcctataacggtgacaaagagtgatgacaattgatactatat 13935768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 24832035 - 24832087
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatattatatat 75  Q
    ||||| || |||||||||||||||||||||||||||  ||| |||||||||||    
T  24832035 gatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatat 24832087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 171 - 2
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||| ||||| ||||||| |||||| |||||||||  |||||||||  |||||||||||||||||||| || |  ||||||||||||||||||||| |     
T  171 gatgaggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacga 72  T
Q  121 tgaagagagtaatgagggttaaat---tatgacgatgaggatgaaaatgtctatattataaagacgatga 187  Q
    ||| ||||||||||| ||||||||   ||||| ||||||||||| ||||||||||||||| |||| ||||    
T  71 tgaggagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatga 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 9191144 - 9190957
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatat--tatatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgg 120  Q
    ||||| ||||||||||| ||||| ||||||||||||  ||||||||  ||||||||||||||||||||| || ||||||||||||||||||||||| |      
T  9191144 gatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataaataaatacgatgagaaacaatgtttatattatatt-- 9191047  T
Q  121 tgaagagagtaatgagggttaaattatgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatga 213  Q
       |  |||||||   ||||||||||||| || |||||||| ||||||||||||| |   || | |||||||||||||| |||||||||||||    
T  9191046 ---aatgagtaatagtggttaaattatgatgacgaggatgataatgtctatattacaggaacaaagagaatgatgataattatactattatga 9190957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 8403921 - 8404005
Alignment:
Q  146 atgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggagagagatgatg 230  Q
    |||| ||||||||||| ||||| |||||| ||  || |||||| |||| ||||||||||  |||||||||  ||||| |||||||    
T  8403921 atgaagatgaggatgataatgtttatattttagtgatgatgaggatgacgataactatatcattatgatgatgagagtgatgatg 8404005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 37945832 - 37945961
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaataaataaatgcggtgagaa---acaatgtttatattataatg 119  Q
    ||||| ||||| ||||| ||| |||||| |||||||   |||||||||||||||| ||||||||||| || | ||||   || |||||||||||| |||     
T  37945832 gatgaggaatcatataactgtaacaaagtgtgatgatggttgatattatatatgtaaataaataaatacgataagaaatgacgatgtttatattacaata 37945931  T
Q  120 gtgaagagagtaatgagggttaaattatga 149  Q
    |||| |||||| | || |||||||||||||    
T  37945932 gtgatgagagtgaagatggttaaattatga 37945961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 4531774 - 4531824
Alignment:
Q  41 tgtgacaaagagtgatgacaattgatat--tatatatgtgaataaataaat 89  Q
    |||||| |||||||||||||||||||||  ||||||||| |||||||||||    
T  4531774 tgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaat 4531824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 1567073 - 1567124
Alignment:
Q  24 atgaagaatcctataattgtgacaaagagtgatgacaattgatattatatat 75  Q
    |||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1567073 atgaggaatcatataattgtgacaaagagtgatgacgattgatattatatat 1567124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 14481635 - 14481687
Alignment:
Q  23 gatgaagaatcctataattgtgacaaagagtgatgacaattgatattatatat 75  Q
    ||||| || |||||||| ||||||||||||||||||  ||| |||||||||||    
T  14481635 gatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatat 14481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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