View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0763_low_23 (Length: 251)
Name: NF0763_low_23
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0763_low_23 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 28663700 - 28663848
Alignment:
| Q |
101 |
gtgtccgtgcttcatatacattatataacatttacttcaaaagtcaaacataaacataattaattggtcactttgattcaatcaggaggacactcagtgg |
200 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28663700 |
gtgtctgtgcttcatatacattata--acatttacttcaaaagtcaaacataaacataattaattggtcactttgattcaatcaggaggacactcagtgg |
28663797 |
T |
|
| Q |
201 |
gaagagtacattgcatgaatttggtccacagactataccccacagtggacc |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
28663798 |
gaagagtacattgcatgaatatggtccatagactataccccacggtggacc |
28663848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 28636186 - 28636276
Alignment:
| Q |
159 |
attaattggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatttggtccacagactataccccacagtgga |
249 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636186 |
attaactggtcactttgattaaatcaggagcacactcagttggaagagtacattgcatgaatttggtccacagactataccccacagtgga |
28636276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 28606406 - 28606491
Alignment:
| Q |
164 |
ttggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatttggtccacagactataccccacagtgga |
249 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606406 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcatgaatttggtccacagactataccccacagtgga |
28606491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 28656682 - 28656772
Alignment:
| Q |
161 |
taattggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatttggtccacagactataccccacagtggacc |
251 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||||||||||| | |||||||| |
|
|
| T |
28656682 |
taattggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacc |
28656772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 26830606 - 26830645
Alignment:
| Q |
66 |
aaaaaatcacataattaaatgtgattacaagtgtcgtgtc |
105 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
26830606 |
aaaaaatcacataattaaatgtaattataagtgtcgtgtc |
26830645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 426555 - 426520
Alignment:
| Q |
66 |
aaaaaatcacataattaaatgtgattacaagtgtcg |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
426555 |
aaaaaatcacataattaaatgtaattacaagtgtcg |
426520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 4118374 - 4118341
Alignment:
| Q |
66 |
aaaaaatcacataattaaatgtgattacaagtgt |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
4118374 |
aaaaaatcacataattaaatgtaattacaagtgt |
4118341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3816 times since January 2019
Visitors: 4822