View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0763_low_4 (Length: 498)
Name: NF0763_low_4
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0763_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 104 - 498
Target Start/End: Complemental strand, 18714744 - 18714354
Alignment:
| Q |
104 |
gttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcctgcaccgtgtgttgttattgnnnnnn |
203 |
Q |
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| T |
18714744 |
gttaccattgttggtgagaaagttgtaagcctcccgaactgtgtaacgatgagaaggatgtaataaccacctcctgcaccgtgtgttgttattttatttt |
18714645 |
T |
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| Q |
204 |
nnnnnnnnnnaaaactcggtatccgacgtgtgttgttattcttgttggtggtgatgaggctccttgggctcattgacagaattcatacatctccaagtgc |
303 |
Q |
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| T |
18714644 |
tttttgt----aaactcggtatccgacgtgtgttgttattcttgttggtggtgatgaggctccttgggctcattgacagaattcatacatctccaagtgc |
18714549 |
T |
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| Q |
304 |
atatgggcaaatcaatggccatggtggcaaagccctaggtcagaaagggcgacacctactacaataaccactgatctccaatctgaacatgattgattga |
403 |
Q |
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| T |
18714548 |
atatcggcaaatcaatggccatggtggcaaagccctaggtcagaaagggcgacacctactacagtaaccactgatctccaatctgaacatgattgattga |
18714449 |
T |
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| Q |
404 |
ctcaaacaggctgcagttacaacgtgacttgatttgcaccaaaataatccaccgatgaattaaataatattaacacaatacactgaaaataatga |
498 |
Q |
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| T |
18714448 |
ctcaagcaggctgcagttacaacgtgacttgatttgcaccaaaataatccaccgatgaattaaataatattaacacaatacactgaaaataatga |
18714354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 46610010 - 46610083
Alignment:
| Q |
104 |
gttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcc |
177 |
Q |
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| T |
46610010 |
gttaccgttgttggtgagaaagtggtaagcttcccgcaccgtgtaaccatgagaaggatgtagtaaccacctcc |
46610083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 12237686 - 12237613
Alignment:
| Q |
104 |
gttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcc |
177 |
Q |
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| T |
12237686 |
gttaccattgtttgtgagaaaacgatatgactcccgtactgtgtaaccatgagaaggatgtaataaccatctcc |
12237613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 25720784 - 25720710
Alignment:
| Q |
103 |
agttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcc |
177 |
Q |
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|||||||||| ||||| |||||| |||||| |||| || ||||||| ||||||||||| || ||||||||||| |
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| T |
25720784 |
agttaccattattggtaagaaagcggtaagcttccctaaccgtgtaaccatgagaaggatctagtaaccacctcc |
25720710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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