View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0763_low_7 (Length: 460)

Name: NF0763_low_7
Description: NF0763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0763_low_7
NF0763_low_7
[»] chr5 (2 HSPs)
chr5 (253-414)||(5522254-5522415)
chr5 (80-187)||(5521095-5521202)
[»] chr1 (2 HSPs)
chr1 (259-336)||(51754596-51754673)
chr1 (253-291)||(51766540-51766578)
[»] chr2 (2 HSPs)
chr2 (101-183)||(26894949-26895031)
chr2 (101-183)||(26900388-26900470)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 253 - 414
Target Start/End: Original strand, 5522254 - 5522415
Alignment:
Q  253 tttattagtgtcaaccaaagtatgttttgccataaacatgtggcattatccaatcaaaccaacacattattaattgtttcctcccatttcctaaaactaa 352  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5522254 tttattagtgtcaaccaaagtatgtttggtcataaacatatggcattgtccaatcaaacgaacacattattaattgtttcctcccatttcctaaaactaa 5522353  T
Q  353 ttaaacattcaatcttcaaactcttgaattattatttcccctttagtgttcatgatgattcc 414  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  5522354 ttaaacattcaatcttcaaactcttgaattactatttcccctttagtcttcatgatgattcc 5522415  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 5521095 - 5521202
Alignment:
Q  80 agagagttatgggagggagggagtaagaatgagggaaagggtagannnnnnnnnncttcttatgtgagtgtgtgttgttattactcacgtgtgtctagta 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||| |||||    
T  5521095 agagagttatgggagggagggagtaagaatgagggaaagggtagattttttttttcttcttatgtgagtgtgtgttgttattactcacgtgtgtttagta 5521194  T
Q  180 agttctat 187  Q
    ||||||||    
T  5521195 agttctat 5521202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 51754673 - 51754596
Alignment:
Q  259 agtgtcaaccaaagtatgttttgccataaacatgtggcattatccaatcaaaccaacacattattaattgtttcctcc 336  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||  |||||||||||||||||||    
T  51754673 agtgtcaaccaaagtatgttttgtcataaacatatggcattgtccaatcaaaccaacctattattaattgtttcctcc 51754596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 51766578 - 51766540
Alignment:
Q  253 tttattagtgtcaaccaaagtatgttttgccataaacat 291  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  51766578 tttattagtgtcaaccaaagtatgttttgtcataaacat 51766540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 26894949 - 26895031
Alignment:
Q  101 agtaagaatgagggaaagggtagannnnnnnnnncttcttatgtgagtgtgtgttgttattactcacgtgtgtctagtaagtt 183  Q
    ||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26894949 agtaagaatgagggaaagggtagactttttttttcttcttatgtgaatgtgtgttgttattactcacgtgtgtctagtaagtt 26895031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 26900388 - 26900470
Alignment:
Q  101 agtaagaatgagggaaagggtagannnnnnnnnncttcttatgtgagtgtgtgttgttattactcacgtgtgtctagtaagtt 183  Q
    ||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26900388 agtaagaatgagggaaagggtagactttttttttcttcttatgtgaatgtgtgttgttattactcacgtgtgtctagtaagtt 26900470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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