View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_high_2 (Length: 358)
Name: NF0764_high_2
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 15514489 - 15514638
Alignment:
| Q |
198 |
acgaataacaaccaatgcaagacaaacacgaaccgataccatttttggaaccggagcaaatgtctcattaaaatcaatactagcaacttgattgttgcca |
297 |
Q |
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| T |
15514489 |
acgaataacaaccaatgcaagaaaaacacgaaccgataccatttttgcaaccggagcaaatgtctcaaaaaaaccaataccaacaacttgattgttgcca |
15514588 |
T |
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| Q |
298 |
ataataacaagatgtgctttgtgtcgttcaatagtaccattgcaacagct |
347 |
Q |
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| T |
15514589 |
ataataacaagatgtgctttgtgtcgttcaatagtaccattgtaacagct |
15514638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 15512605 - 15512719
Alignment:
| Q |
83 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaaga |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||| |
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| T |
15512605 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtactggaaagaaggtttatgatgatggctggtttgaaattattggatacaaga |
15512704 |
T |
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| Q |
183 |
aaacgggatacctta |
197 |
Q |
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| T |
15512705 |
aaacgggatacctta |
15512719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 16328013 - 16327899
Alignment:
| Q |
83 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaaga |
182 |
Q |
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| T |
16328013 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtactggaaagaatgtttatgatgatggttggtttgaacttattgcatacgaga |
16327914 |
T |
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| Q |
183 |
aaacgggatacctta |
197 |
Q |
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||| ||||| |||| |
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| T |
16327913 |
gaaccggatatctta |
16327899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 16351432 - 16351321
Alignment:
| Q |
83 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaaga |
182 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| | ||||||||| |
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| T |
16351432 |
gttgaagcagaaaatgagttccctacaccatggctggctattgatggtactggaaagaatgtt---catgatggttggtttgaacttactagatacaaga |
16351336 |
T |
|
| Q |
183 |
aaacgggatacctta |
197 |
Q |
| |
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| T |
16351335 |
gatcgggatacctta |
16351321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 15985028 - 15984917
Alignment:
| Q |
83 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaaga |
182 |
Q |
| |
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||||||| |||||||||||||||| |||||||| || ||||||||||||| | ||||| |||| |||||||||||||| || | |||||| ||||| |
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| T |
15985028 |
gttgaagaagaaaatgagtaccctgcaccatgggtgactattgatggtacaaacaagaatgttt---atgatggttggtttcaaatagttggattcaaga |
15984932 |
T |
|
| Q |
183 |
aaacgggatacctta |
197 |
Q |
| |
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| T |
15984931 |
agacgggatacctta |
15984917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 15505415 - 15505464
Alignment:
| Q |
83 |
gttgaagcagaaaatgagtaccctacaccatggctggctattgatggtac |
132 |
Q |
| |
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||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
15505415 |
gttgaagcagaaaatgagtaccctacaccatgggtgactattgatggtac |
15505464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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