View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0764_high_3 (Length: 354)

Name: NF0764_high_3
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0764_high_3
NF0764_high_3
[»] chr8 (45 HSPs)
chr8 (77-347)||(25132976-25133246)
chr8 (103-303)||(3989369-3989570)
chr8 (103-265)||(12784115-12784274)
chr8 (103-300)||(28161975-28162173)
chr8 (105-250)||(7995086-7995231)
chr8 (103-300)||(25732358-25732556)
chr8 (30-81)||(12208825-12208876)
chr8 (30-81)||(12453253-12453304)
chr8 (30-81)||(18146361-18146412)
chr8 (35-82)||(29725759-29725806)
chr8 (30-81)||(43150271-43150322)
chr8 (30-81)||(45069848-45069899)
chr8 (30-79)||(34617683-34617732)
chr8 (30-78)||(38760839-38760887)
chr8 (35-82)||(31642783-31642830)
chr8 (35-82)||(35019505-35019552)
chr8 (41-81)||(2773623-2773663)
chr8 (30-81)||(35253059-35253110)
chr8 (35-78)||(38364505-38364548)
chr8 (30-77)||(41356313-41356360)
chr8 (35-82)||(43129608-43129655)
chr8 (30-81)||(43873977-43874028)
chr8 (30-81)||(45237822-45237873)
chr8 (29-78)||(29051201-29051250)
chr8 (30-77)||(4477648-4477695)
chr8 (30-81)||(39104207-39104258)
chr8 (30-81)||(40532076-40532127)
chr8 (41-81)||(3512490-3512530)
chr8 (41-81)||(5838275-5838315)
chr8 (227-322)||(12246915-12247011)
chr8 (38-78)||(19142959-19142999)
chr8 (45-81)||(38747001-38747037)
chr8 (45-81)||(43800813-43800849)
chr8 (30-73)||(42353719-42353762)
chr8 (30-81)||(45236993-45237044)
chr8 (106-156)||(39533696-39533746)
chr8 (41-78)||(34903418-34903455)
chr8 (41-81)||(16786571-16786611)
chr8 (45-77)||(20697550-20697582)
chr8 (45-77)||(22215134-22215166)
chr8 (41-81)||(24804527-24804567)
chr8 (45-81)||(25099432-25099468)
chr8 (45-77)||(36859251-36859283)
chr8 (45-81)||(39733745-39733781)
chr8 (41-81)||(40529520-40529560)
[»] chr6 (35 HSPs)
chr6 (105-265)||(7090441-7090601)
chr6 (103-300)||(10516004-10516202)
chr6 (103-300)||(11986065-11986263)
chr6 (103-302)||(30063684-30063884)
chr6 (103-265)||(21698596-21698758)
chr6 (103-300)||(15950650-15950848)
chr6 (121-298)||(23631438-23631616)
chr6 (30-81)||(1789806-1789857)
chr6 (108-322)||(13434181-13434396)
chr6 (30-81)||(18368763-18368814)
chr6 (103-206)||(1638287-1638390)
chr6 (30-81)||(13866283-13866334)
chr6 (35-82)||(15508367-15508414)
chr6 (30-81)||(18801719-18801770)
chr6 (31-82)||(31603942-31603993)
chr6 (35-82)||(32562445-32562492)
chr6 (30-78)||(4976546-4976594)
chr6 (35-82)||(5090118-5090165)
chr6 (31-82)||(5956440-5956491)
chr6 (35-82)||(24159256-24159303)
chr6 (30-81)||(31259577-31259628)
chr6 (35-82)||(34574629-34574676)
chr6 (41-81)||(25023495-25023535)
chr6 (30-73)||(190950-190993)
chr6 (157-236)||(33169458-33169537)
chr6 (45-81)||(21860253-21860289)
chr6 (45-81)||(24119283-24119319)
chr6 (31-82)||(1290400-1290451)
chr6 (39-82)||(21526290-21526333)
chr6 (41-82)||(6834086-6834127)
chr6 (45-82)||(21459040-21459077)
chr6 (45-81)||(13756364-13756400)
chr6 (106-189)||(15923609-15923689)
chr6 (45-81)||(20645677-20645713)
chr6 (45-81)||(22707310-22707346)
[»] chr7 (63 HSPs)
chr7 (103-262)||(21588169-21588328)
chr7 (106-264)||(19017049-19017207)
chr7 (103-322)||(7097438-7097658)
chr7 (103-262)||(665008-665167)
chr7 (103-297)||(5609528-5609723)
chr7 (103-305)||(13783716-13783919)
chr7 (103-250)||(27244070-27244217)
chr7 (103-300)||(29526678-29526876)
chr7 (103-265)||(21824263-21824425)
chr7 (111-300)||(15455655-15455845)
chr7 (103-265)||(33972970-33973132)
chr7 (30-81)||(1602009-1602060)
chr7 (30-81)||(30582690-30582741)
chr7 (30-81)||(35670383-35670434)
chr7 (30-81)||(37658144-37658195)
chr7 (103-265)||(5086481-5086643)
chr7 (30-81)||(1602082-1602133)
chr7 (35-82)||(1602160-1602207)
chr7 (30-81)||(31619524-31619575)
chr7 (35-82)||(33982349-33982396)
chr7 (30-81)||(40061182-40061233)
chr7 (35-82)||(43544930-43544977)
chr7 (35-82)||(585924-585971)
chr7 (30-73)||(8932529-8932572)
chr7 (30-73)||(9806618-9806661)
chr7 (30-81)||(31436276-31436327)
chr7 (35-82)||(33979634-33979681)
chr7 (35-82)||(37708125-37708172)
chr7 (30-81)||(39709873-39709924)
chr7 (30-81)||(39870050-39870101)
chr7 (31-77)||(36121454-36121500)
chr7 (36-82)||(41406206-41406252)
chr7 (45-82)||(21920840-21920877)
chr7 (107-300)||(32535005-32535201)
chr7 (41-81)||(46534427-46534467)
chr7 (35-82)||(596146-596193)
chr7 (30-77)||(31969495-31969542)
chr7 (30-81)||(35747044-35747095)
chr7 (35-74)||(42833758-42833797)
chr7 (30-81)||(43468039-43468090)
chr7 (30-81)||(44104605-44104656)
chr7 (35-73)||(31030798-31030836)
chr7 (30-76)||(42329584-42329630)
chr7 (41-81)||(6476945-6476985)
chr7 (45-81)||(27826728-27826764)
chr7 (45-81)||(28494320-28494356)
chr7 (45-81)||(42265317-42265353)
chr7 (45-81)||(42329067-42329103)
chr7 (45-81)||(43156587-43156623)
chr7 (45-81)||(43337652-43337688)
chr7 (35-82)||(30999378-30999425)
chr7 (30-77)||(44570955-44571002)
chr7 (30-81)||(44818740-44818791)
chr7 (45-82)||(28235303-28235340)
chr7 (41-82)||(30523994-30524035)
chr7 (45-82)||(48935253-48935290)
chr7 (45-81)||(4060371-4060407)
chr7 (45-81)||(6243886-6243922)
chr7 (45-81)||(28958166-28958202)
chr7 (45-81)||(35647435-35647471)
chr7 (41-81)||(42328225-42328265)
chr7 (41-81)||(46349924-46349964)
chr7 (45-81)||(46672525-46672561)
[»] chr3 (54 HSPs)
chr3 (103-300)||(2439340-2439538)
chr3 (103-303)||(9734469-9734670)
chr3 (103-300)||(34934939-34935137)
chr3 (103-303)||(8968405-8968606)
chr3 (103-305)||(15789888-15790091)
chr3 (103-300)||(14504138-14504336)
chr3 (35-82)||(7041748-7041795)
chr3 (35-82)||(22978097-22978144)
chr3 (30-81)||(32111589-32111640)
chr3 (31-82)||(34785908-34785959)
chr3 (35-82)||(42167366-42167413)
chr3 (35-82)||(43860744-43860791)
chr3 (31-82)||(46115006-46115057)
chr3 (103-217)||(26307309-26307423)
chr3 (30-81)||(5505951-5506002)
chr3 (30-81)||(12122910-12122961)
chr3 (30-77)||(32390143-32390190)
chr3 (30-81)||(39129393-39129444)
chr3 (30-81)||(40374537-40374588)
chr3 (35-82)||(41888827-41888874)
chr3 (35-78)||(48071998-48072041)
chr3 (35-82)||(50935731-50935778)
chr3 (35-81)||(46668360-46668406)
chr3 (103-207)||(13434482-13434586)
chr3 (41-81)||(42528096-42528136)
chr3 (30-81)||(36660165-36660216)
chr3 (30-81)||(36806941-36806992)
chr3 (35-82)||(39129318-39129365)
chr3 (35-78)||(41889455-41889498)
chr3 (35-82)||(42877258-42877305)
chr3 (103-200)||(32073625-32073722)
chr3 (30-82)||(39534970-39535022)
chr3 (30-73)||(6586292-6586335)
chr3 (39-82)||(50938275-50938318)
chr3 (45-81)||(8321475-8321511)
chr3 (41-81)||(12122214-12122254)
chr3 (41-81)||(17666634-17666674)
chr3 (45-81)||(19274749-19274785)
chr3 (41-81)||(32999697-32999737)
chr3 (45-81)||(34436019-34436055)
chr3 (30-78)||(40980169-40980217)
chr3 (45-81)||(41991728-41991764)
chr3 (41-73)||(51980759-51980791)
chr3 (106-185)||(29704616-29704695)
chr3 (100-143)||(48052386-48052429)
chr3 (30-77)||(48747427-48747474)
chr3 (45-79)||(1361692-1361726)
chr3 (40-77)||(6124734-6124771)
chr3 (45-82)||(9558904-9558941)
chr3 (103-151)||(2651826-2651874)
chr3 (41-81)||(10809539-10809579)
chr3 (45-81)||(12055559-12055595)
chr3 (41-81)||(45356458-45356498)
chr3 (45-81)||(48051013-48051049)
[»] chr5 (45 HSPs)
chr5 (138-301)||(31291563-31291727)
chr5 (103-305)||(13065489-13065692)
chr5 (103-302)||(19609174-19609374)
chr5 (103-306)||(8724554-8724758)
chr5 (103-265)||(18521672-18521833)
chr5 (103-241)||(20587547-20587685)
chr5 (103-241)||(20706026-20706164)
chr5 (30-81)||(3033412-3033463)
chr5 (30-81)||(11575641-11575692)
chr5 (103-250)||(11619190-11619337)
chr5 (103-265)||(36961993-36962155)
chr5 (30-78)||(20017335-20017383)
chr5 (30-81)||(1923966-1924017)
chr5 (35-82)||(3033337-3033384)
chr5 (30-81)||(4559509-4559560)
chr5 (35-82)||(8520515-8520562)
chr5 (103-265)||(42765165-42765327)
chr5 (30-81)||(8520586-8520637)
chr5 (30-81)||(13019013-13019064)
chr5 (35-82)||(15524380-15524427)
chr5 (41-81)||(7157538-7157578)
chr5 (30-77)||(3078570-3078617)
chr5 (45-82)||(5050146-5050183)
chr5 (45-81)||(6789658-6789694)
chr5 (45-81)||(11784237-11784273)
chr5 (41-81)||(13359521-13359561)
chr5 (45-81)||(15498664-15498700)
chr5 (45-81)||(16218352-16218388)
chr5 (45-81)||(24171384-24171420)
chr5 (45-81)||(29525365-29525401)
chr5 (45-81)||(34589970-34590006)
chr5 (41-81)||(35766578-35766618)
chr5 (41-81)||(36944280-36944320)
chr5 (45-81)||(37530789-37530825)
chr5 (45-81)||(41734313-41734349)
chr5 (45-81)||(42709330-42709366)
chr5 (30-73)||(20768897-20768940)
chr5 (45-83)||(17540278-17540316)
chr5 (41-78)||(2891014-2891051)
chr5 (41-82)||(5102743-5102784)
chr5 (45-81)||(76433-76469)
chr5 (45-81)||(7615046-7615082)
chr5 (45-81)||(10815082-10815118)
chr5 (45-81)||(12280800-12280836)
chr5 (45-81)||(36761081-36761117)
[»] scaffold0251 (1 HSPs)
scaffold0251 (103-305)||(2255-2458)
[»] scaffold0114 (1 HSPs)
scaffold0114 (103-300)||(11551-11749)
[»] chr2 (49 HSPs)
chr2 (103-294)||(21085016-21085208)
chr2 (103-302)||(31426297-31426497)
chr2 (103-300)||(34071383-34071580)
chr2 (103-321)||(20471005-20471224)
chr2 (108-302)||(18777124-18777319)
chr2 (30-81)||(18109744-18109795)
chr2 (35-82)||(33178979-33179026)
chr2 (35-82)||(36600955-36601002)
chr2 (30-81)||(38928519-38928570)
chr2 (103-265)||(27072248-27072410)
chr2 (35-80)||(14452320-14452365)
chr2 (29-82)||(28125034-28125087)
chr2 (35-82)||(6319555-6319602)
chr2 (31-82)||(11447258-11447309)
chr2 (30-81)||(40862233-40862284)
chr2 (30-82)||(8341184-8341236)
chr2 (30-82)||(44526016-44526068)
chr2 (35-82)||(6322174-6322221)
chr2 (30-77)||(10247412-10247459)
chr2 (30-81)||(26340063-26340114)
chr2 (35-82)||(33182603-33182650)
chr2 (39-82)||(36602770-36602813)
chr2 (31-82)||(37240967-37241018)
chr2 (35-82)||(38928598-38928645)
chr2 (30-77)||(39532085-39532132)
chr2 (35-81)||(7183316-7183362)
chr2 (45-82)||(6432188-6432225)
chr2 (104-300)||(7861453-7861646)
chr2 (45-81)||(10361412-10361448)
chr2 (30-82)||(15265370-15265422)
chr2 (35-82)||(1086061-1086108)
chr2 (30-81)||(38245929-38245980)
chr2 (40-82)||(10959587-10959629)
chr2 (45-82)||(45376927-45376964)
chr2 (41-81)||(5774112-5774152)
chr2 (45-81)||(11018076-11018112)
chr2 (45-81)||(12160958-12160994)
chr2 (45-81)||(30523628-30523664)
chr2 (45-81)||(34245265-34245301)
chr2 (45-81)||(36936117-36936153)
chr2 (45-81)||(39241205-39241241)
chr2 (47-82)||(24520264-24520299)
chr2 (111-185)||(41162566-41162640)
chr2 (44-81)||(42097955-42097992)
chr2 (45-82)||(43496180-43496217)
chr2 (45-81)||(1876077-1876113)
chr2 (45-81)||(16496660-16496696)
chr2 (45-81)||(38324257-38324293)
chr2 (45-81)||(42519733-42519769)
[»] scaffold1689 (1 HSPs)
scaffold1689 (103-250)||(814-961)
[»] chr1 (52 HSPs)
chr1 (103-302)||(4179819-4180019)
chr1 (103-241)||(22161661-22161799)
chr1 (103-300)||(26418806-26419004)
chr1 (103-300)||(32108276-32108474)
chr1 (103-250)||(11644650-11644797)
chr1 (103-234)||(21182555-21182686)
chr1 (103-294)||(29600864-29601056)
chr1 (30-81)||(3795993-3796044)
chr1 (35-82)||(4640127-4640174)
chr1 (30-81)||(5698145-5698196)
chr1 (30-81)||(14390441-14390492)
chr1 (123-265)||(40454625-40454768)
chr1 (35-82)||(44109966-44110013)
chr1 (35-82)||(44299978-44300025)
chr1 (103-302)||(38532724-38532924)
chr1 (30-81)||(35179839-35179890)
chr1 (30-81)||(39325546-39325597)
chr1 (30-82)||(31496628-31496680)
chr1 (35-82)||(23259103-23259150)
chr1 (30-81)||(31656388-31656439)
chr1 (30-81)||(42628247-42628298)
chr1 (35-81)||(9223859-9223905)
chr1 (40-81)||(5698527-5698568)
chr1 (41-81)||(38058768-38058808)
chr1 (30-77)||(4361089-4361136)
chr1 (35-82)||(11756906-11756953)
chr1 (30-81)||(30899451-30899502)
chr1 (35-82)||(43847463-43847510)
chr1 (103-265)||(25594844-25595006)
chr1 (177-302)||(27527138-27527264)
chr1 (31-81)||(44502580-44502630)
chr1 (44-81)||(2459689-2459726)
chr1 (45-82)||(44278009-44278046)
chr1 (103-167)||(11420379-11420443)
chr1 (45-81)||(27747626-27747662)
chr1 (45-81)||(30358093-30358129)
chr1 (30-78)||(34086221-34086269)
chr1 (45-81)||(38815593-38815629)
chr1 (45-81)||(39325630-39325666)
chr1 (41-81)||(41865306-41865346)
chr1 (45-81)||(46315732-46315768)
chr1 (45-81)||(50586223-50586259)
chr1 (35-82)||(42159630-42159677)
chr1 (30-63)||(18545626-18545659)
chr1 (41-81)||(2937356-2937396)
chr1 (45-81)||(11332861-11332897)
chr1 (45-81)||(11490882-11490918)
chr1 (45-81)||(11823603-11823639)
chr1 (30-66)||(38667225-38667261)
chr1 (30-74)||(42330221-42330265)
chr1 (45-81)||(45900188-45900224)
chr1 (45-81)||(47326628-47326664)
[»] chr4 (58 HSPs)
chr4 (103-300)||(47782841-47783039)
chr4 (103-303)||(25553096-25553297)
chr4 (103-250)||(40686862-40687009)
chr4 (103-300)||(20089076-20089274)
chr4 (103-265)||(17459286-17459448)
chr4 (30-81)||(19912692-19912743)
chr4 (30-81)||(30411281-30411332)
chr4 (35-82)||(48953048-48953095)
chr4 (104-224)||(13905888-13906008)
chr4 (35-82)||(43590552-43590599)
chr4 (30-81)||(45549672-45549723)
chr4 (35-82)||(50790842-50790889)
chr4 (35-82)||(50792450-50792497)
chr4 (103-265)||(15065791-15065953)
chr4 (40-82)||(49648859-49648901)
chr4 (36-82)||(55660564-55660610)
chr4 (35-80)||(10658917-10658962)
chr4 (35-80)||(10873062-10873107)
chr4 (29-82)||(48368997-48369050)
chr4 (39-79)||(7113627-7113667)
chr4 (103-247)||(13200744-13200888)
chr4 (42-82)||(14269864-14269904)
chr4 (31-79)||(27531851-27531899)
chr4 (30-78)||(51924048-51924096)
chr4 (30-78)||(55610685-55610733)
chr4 (30-77)||(1771869-1771916)
chr4 (35-82)||(19869978-19870025)
chr4 (35-82)||(19871007-19871054)
chr4 (30-77)||(38005568-38005615)
chr4 (35-81)||(202309-202355)
chr4 (29-66)||(31997866-31997903)
chr4 (45-81)||(7113559-7113595)
chr4 (30-82)||(20986292-20986344)
chr4 (41-77)||(55496077-55496113)
chr4 (30-81)||(2390299-2390350)
chr4 (30-81)||(26923568-26923619)
chr4 (30-73)||(30653525-30653568)
chr4 (35-82)||(31624432-31624479)
chr4 (35-82)||(49646043-49646090)
chr4 (103-149)||(4946711-4946757)
chr4 (45-82)||(24152694-24152731)
chr4 (41-82)||(51941121-51941162)
chr4 (45-81)||(6238207-6238243)
chr4 (45-81)||(19801907-19801943)
chr4 (41-77)||(30653331-30653367)
chr4 (45-81)||(37114478-37114514)
chr4 (45-81)||(39840239-39840275)
chr4 (45-81)||(45561360-45561396)
chr4 (30-82)||(45618079-45618131)
chr4 (45-81)||(53284026-53284062)
chr4 (41-77)||(53431653-53431689)
chr4 (30-73)||(28459639-28459682)
chr4 (45-79)||(43374616-43374650)
chr4 (47-81)||(49335237-49335271)
chr4 (45-78)||(55001788-55001821)
chr4 (45-77)||(19800949-19800981)
chr4 (45-81)||(33984107-33984143)
chr4 (45-77)||(47633888-47633920)
[»] scaffold0445 (1 HSPs)
scaffold0445 (103-265)||(14042-14204)
[»] scaffold0071 (1 HSPs)
scaffold0071 (105-265)||(52562-52722)
[»] scaffold0007 (1 HSPs)
scaffold0007 (103-265)||(234732-234894)
[»] scaffold0115 (2 HSPs)
scaffold0115 (30-81)||(4168-4219)
scaffold0115 (30-81)||(11908-11959)
[»] scaffold0388 (1 HSPs)
scaffold0388 (103-265)||(14473-14634)
[»] scaffold0009 (1 HSPs)
scaffold0009 (35-82)||(94438-94485)
[»] scaffold0039 (1 HSPs)
scaffold0039 (30-77)||(76267-76314)
[»] scaffold0060 (1 HSPs)
scaffold0060 (45-81)||(57893-57929)
[»] scaffold1391 (1 HSPs)
scaffold1391 (41-82)||(1535-1576)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 77 - 347
Target Start/End: Complemental strand, 25133246 - 25132976
Alignment:
Q  77 agcttaagtctaattcaagtagcttgcctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactacta 176  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  25133246 agcttaagtctaattcaagtagcttacctcattttcttgcctcctaataaactcaatatgagagtttattaaataggaattacataattggatactacta 25133147  T
Q  177 tccataatggaaccaaactcggtgacatctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagttatg 276  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||    
T  25133146 tccataatggaaccaaactctctgacatctcccctacctttgttaaaataatgagctactattttcgaatcaacttcaaaaccaacatttatgagttatg 25133047  T
Q  277 ttcatggatccaccgaattgcatggtacaatctccaagcttctccatcccgaaaccaatgagtctctgctc 347  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  25133046 ttcatggatccaccaaattgcatggtacaatctccaagcttctccatcccgaaaccaatcagtctttgctc 25132976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 303
Target Start/End: Complemental strand, 3989570 - 3989369
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||| |  ||||||||||| | |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||     
T  3989570 cctcatttgcttgtcgtctaataaactccacatgagagtttgttaaataggaattacataattggatactactatccataatggaacgaaacttggtgat 3989471  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | || ||| ||||||| |||||||||||||||||||||||  |||||| ||||||| ||||||| | ||| ||| ||||||||||||||||||    
T  3989470 atctccacgacttttattaaaataatcagctactattttcgaatcaatctcaaaatcaacatttatgagttgaagtttatgtatccaccgaattgcatgg 3989371  T
Q  302 ta 303  Q
    ||    
T  3989370 ta 3989369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 12784115 - 12784274
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| |||||| ||||||||||| | ||||||||||  |||||||||| || |||||||| |||||||||||||||||||||| || ||||||||    
T  12784115 cctcatttgtttgccttctaataaactccacatgagagttt--taaataggaactatagaattggatactactatccataatggaacccaattcggtgac 12784212  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||||||||| |||| |||||||||| ||||||||||||| |||||| |||||||    
T  12784213 atctcctcgacctttgtt-aaataatcagctactcttttcgaatcaacctcaaaagcaacatt 12784274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 28161975 - 28162173
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   |||||||||      |||||||||||||||||| ||||||||||||||    
T  28161975 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataaacattacagaagcttaaactactatccataatggagccaaactcggtgac 28162074  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| | ||||||||| |||| |||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||| ||||||||||| |||||    
T  28162075 atctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaacatttgagagttgaagttcatgtatccaccgaatcgcatg 28162173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 7995231 - 7995086
Alignment:
Q  105 tcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacat 204  Q
    ||||||| |||| || |||||||||| | |||||||||| ||||||||||| || | |||||| ||||||||||||||||||||||||| ||| ||||||    
T  7995231 tcatttgtttgcttcataataaactcgacatgagagtttgttaaataggaactataaaattggatactactatccataatggaaccaaattcgatgacat 7995132  T
Q  205 ctcccctacctttgttaaaattatcagctactattttcgaatcaac 250  Q
    |||| | | ||||||| |||| |||||||||| |||||||||||||    
T  7995131 ctcctcgatctttgttgaaataatcagctactcttttcgaatcaac 7995086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 25732358 - 25732556
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||| ||||||||||||||| | |||||||||| |||||||   |||||||||      |||||||||||||||||| |||||||||||||     
T  25732358 cctcatttgcttacctcctaataaactcgacatgagagtttgttaaatattcattacagaagcttaaactactatccataatggagccaaactcggtgat 25732457  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| | ||||||||| |||| |||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||| ||||||||||| |||||    
T  25732458 atctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaacatttgagagttgaagttcatgaatccaccgaatcgcatg 25732556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 12208876 - 12208825
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12208876 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 12208825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 12453304 - 12453253
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12453304 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 12453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 18146412 - 18146361
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18146412 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 18146361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 29725806 - 29725759
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29725806 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 29725759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 43150322 - 43150271
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43150322 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 43150271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 45069848 - 45069899
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45069848 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 45069899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 34617732 - 34617683
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagc 79  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34617732 cattctatcaaaacaagcttataagctagcccaacaagctataagctagc 34617683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 38760839 - 38760887
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38760839 cattctatcaaaacaagcttataagctagtccaacaagctataaactag 38760887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 31642783 - 31642830
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31642783 tatcaaaacaagcttataatctagtccaacaagctataagctagctta 31642830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 35019552 - 35019505
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35019552 tatcaaaacaagcttataagctagtccaacaagctataagctatctta 35019505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 2773623 - 2773663
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2773623 aacaagcttataagctagtccaacaagctataagctagctt 2773663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 35253059 - 35253110
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  35253059 cattctatcaaaacaagcttataagcttgtccagcaaactataagctagctt 35253110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 38364505 - 38364548
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  38364505 tatcaaaacaagcttataaactagtccaacaagctataagctag 38364548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41356360 - 41356313
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  41356360 cattttatcaaaacaagcttataagctagtccaacaagctatatgcta 41356313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 43129655 - 43129608
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  43129655 tatcaaaacaaggttataagctagtccaacaagctataaactagctta 43129608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 43874028 - 43873977
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  43874028 cattttatcaaaacaagcttataagctagttcaacaagctataaactagctt 43873977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 45237822 - 45237873
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  45237822 cattctatcaagacaagcttataagcttgttcaacaagctataagctagctt 45237873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 29051201 - 29051250
Alignment:
Q  29 acattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  29051201 acattctatcaaaacaagcttatgagttagtccaacaaactataagctag 29051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 4477648 - 4477695
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  4477648 cattttatcaaaacaaacttataatctagtccaacaagctataagcta 4477695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 39104207 - 39104258
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||| ||||||||||||||||||||||||||||  |||||||||||||    
T  39104207 cattttataaaaacaagcttataagctagtccaacaaattataagctagctt 39104258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 40532127 - 40532076
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||| |||||||| || ||||||||||||||    
T  40532127 cattttatcaaaacaagcttataagttagtccaataaactataagctagctt 40532076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 3512530 - 3512490
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  3512530 aacaagcttataagctaatccaagaagctataagctagctt 3512490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 5838315 - 5838275
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  5838315 aacaagcttataagctaatccaacaagctataagttagctt 5838275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 12247011 - 12246915
Alignment:
Q  227 atcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatggtacaatctccaagcttctcca 322  Q
    |||| ||||| |||| |||||||  |||||| |||||||  |||| | | ||||||| |||||||||||||||||||| | |||| |||||||||||    
T  12247011 atcaactactctttttgaatcaatctcaaaatcaacatttgtgagctgaagttcatgaatccaccgaattgcatggtaaagtctcaaagcttctcca 12246915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 19142959 - 19142999
Alignment:
Q  38 caaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  19142959 caaaacaagcttataagtcagtccaacaagctataagctag 19142999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 38747001 - 38747037
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38747001 agcttataagctaatccaacaagctataagctagctt 38747037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 43800813 - 43800849
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43800813 agcttataagctaatccaacaagctataagctagctt 43800849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 42353719 - 42353762
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||    
T  42353719 cattctatcaaaacaaacttataagctaatccaacaaactataa 42353762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 45236993 - 45237044
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||| | ||||||||||| ||| ||| |||||||||||||    
T  45236993 cattctatcaaaacaaacctataagctagtacaaaaagttataagctagctt 45237044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 39533746 - 39533696
Alignment:
Q  106 catttgcttgcctcctaataaactcaatatgagagtttattaaataggaat 156  Q
    |||| |||||||||||||||||||||| ||||||||||  ||||| |||||    
T  39533746 cattcgcttgcctcctaataaactcaacatgagagttttctaaattggaat 39533696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 34903418 - 34903455
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctag 78  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  34903418 aacaagcttataagctagtccaacaaggtgtaagctag 34903455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 16786571 - 16786611
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  16786571 aacaagcttataagctaatccaagaagctataagttagctt 16786611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 20697550 - 20697582
Alignment:
Q  45 agcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||| |||||||||||||||||||    
T  20697550 agcttataagctaatccaacaagctataagcta 20697582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 22215166 - 22215134
Alignment:
Q  45 agcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||| |||||||||||||||||||    
T  22215166 agcttataagctaatccaacaagctataagcta 22215134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 24804527 - 24804567
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||| |||| ||||| |||||||||||||||||    
T  24804527 aacaagcttataggctaatccaagaagctataagctagctt 24804567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 25099468 - 25099432
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  25099468 agcttataagctaatccaacaagttataagctagctt 25099432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 36859283 - 36859251
Alignment:
Q  45 agcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||| |||||||||||||||||||    
T  36859283 agcttataagctaatccaacaagctataagcta 36859251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 39733781 - 39733745
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  39733781 agcttataagctaatccaacaaggtataagctagctt 39733745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 40529560 - 40529520
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  40529560 aacaagcttataagctaaacaaacaagctataagctagctt 40529520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 7090441 - 7090601
Alignment:
Q  105 tcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacat 204  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||| || |||| ||||||| ||||| ||||||||||||||||||||||||||| ||    
T  7090441 tcatttgcttgcctcctaataaactcaacatgagagtttgttaaatatgatttactgaattggatactagtatccataatggaaccaaactcggtgatat 7090540  T
Q  205 ctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||   ||||||||||||  |||||||||||||||  ||||||| |||||| |||||||    
T  7090541 ctcccaggcctttgttaaaagaatcagctactattttttaatcaacctcaaaatcaacatt 7090601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 10516202 - 10516004
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||| ||| ||||||||||||||| | |||||||||| ||||||| |   |||| |||||| | ||||||||||||||  ||||||||| ||||||    
T  10516202 cctcatttccttacctcctaataaactcgacatgagagtttgttaaataagtgctacataattggatgctactatccataatacaaccaaacttggtgac 10516103  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| | ||||||||| |||| |||||||||  |||| ||  |||| || ||| ||||||| ||||||| | ||||||| |||||||||||||||||    
T  10516102 atctccacgacctttgttgaaataatcagctacactttttgagacaacctcgaaatcaacatttatgagttgaagttcatgtatccaccgaattgcatg 10516004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 11986263 - 11986065
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||| ||| ||||||||||||||||||| | |||||||||| ||||||| |  ||||| | ||||  |||||||||||||||||||||||||||||||||    
T  11986263 cctcgtttacttgcctcctaataaactcgacatgagagtttgttaaataagtgttacaaagttggacactactatccataatggaaccaaactcggtgac 11986164  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    || ||| | ||| ||||| |||| || ||||||| |||| || ||||  || ||| ||||||| | ||||| | ||||||| ||||||||||| |||||    
T  11986163 atttccacgaccattgttgaaataattagctactctttttgagtcaatctcgaaatcaacatttaagagttgaagttcatgaatccaccgaatcgcatg 11986065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 30063684 - 30063884
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   ||| |||||||||  |||||| ||||| || || ||||| | ||||||    
T  30063684 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataattattgcagaattggacactactgtccatgatagatccaaatttggtgac 30063783  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||| ||||| |||| |||||||||||||||  | || | ||||||| ||||||| |  |||| | ||||||| ||||||||||| ||||||    
T  30063784 atctccgcgaccattgttgaaataatcagctactattttttagtccatttcaaaatcaacatttaaaagttgaagttcatgaatccaccgaatcgcatgg 30063883  T
Q  302 t 302  Q
    |    
T  30063884 t 30063884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 21698758 - 21698596
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   ||| | ||| |||  |||||| |||||||| || ||||| ||||||||    
T  21698758 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataattattgcggaaatggacactactgtccataatagagccaaattcggtgac 21698659  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||| ||||| |||| |||||||||| ||||  | |||||||||||| |||||||    
T  21698658 atctccacgaccattgttgaaataatcagctactcttttttagtcaacttcaaaatcaacatt 21698596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 15950848 - 15950650
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| || || | ||||||||||| ||||| ||||||      
T  15950848 cctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgtt 15950749  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatg 300  Q
    |||||| ||  | ||||| |||| |||||||||| |||||||||| || |||||| |||||||  |||| | | |||||| |||||||||| |||||||    
T  15950748 atctcctcttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatg 15950650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 298
Target Start/End: Complemental strand, 23631616 - 23631438
Alignment:
Q  121 taataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatctcccctacctttgtt 220  Q
    |||||||||| |||||||||||| ||||| |   |||||| || ||| || || ||||||||||||| ||||| ||||||  |||| | || ||||||||    
T  23631616 taataaactcgatatgagagtttgttaaaaatatattacaaaaatggatattattatccataatggatccaaattcggtgctatcttcgctgcctttgtt 23631517  T
Q  221 aaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgca 298  Q
    ||||| |||| ||||| |||||||||| || |||||| | |||||  |||||| | |||||| |||||||| |||||||    
T  23631516 aaaataatcaactactgttttcgaatctacctcaaaatcgacatttgtgagttgaagttcattgatccaccaaattgca 23631438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 1789857 - 1789806
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1789857 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 1789806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 13434396 - 13434181
Alignment:
Q  108 tttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatctc 207  Q
    |||| ||| |||||||||||||||| |||||||||| ||||| || ||||| | || ||| ||||| |||||||||| ||  |||| | | ||  |||||    
T  13434396 tttgattgtctcctaataaactcaacatgagagtttgttaaaaagaaattagaaaactggatactattatccataattgattcaaatttgatgctatctc 13434297  T
Q  208 ccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatggtacaa 306  Q
    | || ||||||||||||| |||| ||||| |||||||||| |  |||||| |||||||  |||| | | |||||| || |||||||||| |||| || |     
T  13434296 ctctgcctttgttaaaataatcaactactgttttcgaatctatctcaaaatcaacatttgtgagctgaagttcattgaaccaccgaattacatgataaag 13434197  T
Q  307 tctccaagcttctcca 322  Q
    || | |||||||||||    
T  13434196 tcgcaaagcttctcca 13434181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 18368763 - 18368814
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18368763 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 18368814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 1638287 - 1638390
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||||||||||||||| || | |||||||||| |||||||    ||||| || ||  |||||||||||||||| || ||||| ||||||||    
T  1638287 cctcatttgcttgcctcctaataaattcgacatgagagtttgttaaataattgttacataagtgtatactactatccataatagagccaaattcggtgac 1638386  T
Q  203 atct 206  Q
    ||||    
T  1638387 atct 1638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 13866334 - 13866283
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  13866334 cattctatcaaaactagtttataagctagtccaacaagctataagctagctt 13866283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 15508414 - 15508367
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  15508414 tatcaaaataagcttataagctagtccaacaagctataagctagctta 15508367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 18801770 - 18801719
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  18801770 cattttatcaaaacaagcttataagttagtccaacaagctataagctagctt 18801719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 31603942 - 31603993
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  31603942 attctatcaaaacaagcttataagctagtccagcaaactataagctagctta 31603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 32562445 - 32562492
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32562445 tatcaaaacaaacttataagctagtccaacaagctataagctagctta 32562492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 4976594 - 4976546
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  4976594 cattttatcaaaacaagcttataagctagtccaacaggctataagctag 4976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 5090118 - 5090165
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  5090118 tatcaaaacaaacttataagctagtccaagaagctataagctagctta 5090165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 5956491 - 5956440
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  5956491 attctatcaaaacaagcttataaactagtccaagaagttataagctagctta 5956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 24159303 - 24159256
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  24159303 tatcaaaacaagcttataagctagtccaacaaactataagctacctta 24159256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 31259577 - 31259628
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||| |||||||||||||| |||||||    
T  31259577 cattttatcaaaacaagcttataagctagcccaacaagctataatctagctt 31259628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 34574629 - 34574676
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  34574629 tatcaaaacaagcttataagctagtccaacaagttataagctaactta 34574676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 25023495 - 25023535
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  25023495 aacaagcttataagctaatccaacaagctataagctagctt 25023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 190993 - 190950
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  190993 cattttatcaaaacaagcttataaactagtccaacaagctataa 190950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 33169537 - 33169458
Alignment:
Q  157 tacagaattgggtactactatccataatggaaccaaactcggtgacatctcccctacctttgttaaaattatcagctact 236  Q
    ||||||||||| ||| ||||||||| |||||| |||| |  ||||||||||| | ||||||||| |||| ||||||||||    
T  33169537 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcaacctttgttgaaataatcagctact 33169458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 21860289 - 21860253
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21860289 agcttataagctaatccaacaagctataagctagctt 21860253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 24119283 - 24119319
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24119283 agcttataagctaatccaacaagctataagctagctt 24119319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 1290451 - 1290400
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||| || |||||||||||||| || |||||||||||||||| ||||    
T  1290451 attctatcataataagcttataagctattctaacaagctataagctaactta 1290400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 21526333 - 21526290
Alignment:
Q  39 aaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||| || |||||||||||| |||||    
T  21526333 aaaacaagcttataagctagtctaataagctataagctcgctta 21526290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 6834086 - 6834127
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    
T  6834086 aacaagcttataagctagttcaacaaactataagatagctta 6834127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 21459077 - 21459040
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| || |||||||||||||||||||||    
T  21459077 agcttataagctaatctaacaagctataagctagctta 21459040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 13756364 - 13756400
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  13756364 agcttataagctaatccaacaagctataaactagctt 13756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 15923609 - 15923689
Alignment:
Q  106 catttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaac 189  Q
    |||||||||||||  |||||||||||| || | ||||||||||||| |||||||| ||| |   |||| |||||||||||||||    
T  15923609 catttgcttgcct--taataaactcaacatcaaagtttattaaatatgaattaca-aatggtacactattatccataatggaac 15923689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 20645713 - 20645677
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  20645713 agcttataagctaatccaacaaactataagctagctt 20645677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 22707346 - 22707310
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  22707346 agcttataaactaatccaacaagctataagctagctt 22707310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 63)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 21588169 - 21588328
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| |||||||||||||||||| | |||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||| ||||| ||    
T  21588169 cctcatttgattgcctcctaataaactcgacatgagagtttgttaaataggaactatagaattggatactactgtccataatggaaccaaattcggtaac 21588268  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaac 262  Q
    |||||| | ||||||||| |||| |||||||| ||||||||||||||| |||||| ||||    
T  21588269 atctcctcaacctttgttgaaataatcagctattattttcgaatcaacctcaaaatcaac 21588328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 19017049 - 19017207
Alignment:
Q  106 catttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatc 205  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||||| ||  ||||| ||||||| ||||||||||||||||||| |||    
T  19017049 catttgcttgcctcctaataaactcaacacgagagtttgttaaatatgaattacagaaatgtatactattatccatgatggaaccaaactcggtgatatc 19017148  T
Q  206 tcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacat 264  Q
    |||| |  || | ||||||| |||||||||| ||||||| ||||| |||||| ||||||    
T  19017149 tcccttctctctattaaaataatcagctacttttttcgagtcaacctcaaaatcaacat 19017207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 322
Target Start/End: Original strand, 7097438 - 7097658
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||||||| |||||||||| | || ||||||||||||| ||| |||||| || | | || |  ||||||||||||| ||||| ||||||      
T  7097438 cctcatttgcttgcctcttaataaactcgacataagagtttattaaaaaggtattacaaaacttgatatttttatccataatggatccaaattcggtgct 7097537  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatgg 301  Q
    |||||| || ||||||||||||| | |||||||| |||||||||| || |||||| |||||||  |||| | | |||||| ||||||||||||||||||     
T  7097538 atctcctctgcctttgttaaaataaccagctactgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgaattgcatga 7097637  T
Q  302 tacaatctccaagcttctcca 322  Q
    || | |||| |||||||||||    
T  7097638 taaagtctcaaagcttctcca 7097658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 665008 - 665167
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||| |||||||||||||| | |||||||||| ||||||||| | | || |||||| ||| ||||||||||||  ||||||| | ||||||    
T  665008 cctcatttgcttgtctcctaataaactcgacatgagagtttgttaaataggtactgcaaaattggatacaactatccataatataaccaaatttggtgac 665107  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaac 262  Q
    || ||| | ||||||||| |||| |||||||||| |||| |||||||| |||||| ||||    
T  665108 atgtcctcgacctttgttgaaataatcagctactctttttgaatcaacctcaaaatcaac 665167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 103 - 297
Target Start/End: Original strand, 5609528 - 5609723
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||||||||||| | |||||||||| |||| ||||  |||||||| ||| |||| |||||||||||  ||||||| ||||||||    
T  5609528 cctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaggtgttacagaagtggatactgctatccataataaaaccaaattcggtgac 5609627  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgc 297  Q
    |||||| | ||||||||| |||| |||||||||| |||| ||  |||| || ||| |||||||  |||||| | |||| || ||||||||| ||||    
T  5609628 atctccacgacctttgttgaaataatcagctactcttttagagccaacctcgaaatcaacatttgtgagttgaagttcttgtatccaccgagttgc 5609723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 103 - 305
Target Start/End: Complemental strand, 13783919 - 13783716
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||| ||||||| | |||||| ||| ||||| | ||   ||| || ||| | ||||| ||||| ||||||||||| ||||||||    
T  13783919 cctcattcgcttgcctcctagtaaactcgacatgagattttgttaaaaatgaccgacaaaaatggatgctactgtccattatggaaccaaattcggtgac 13783820  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| |  |||||||| |||| ||| ||||||  |||||| |||||||||||| |||||||  |||||| | |||||||||||||||||||||||||     
T  13783819 atctccacggcctttgttgaaataatccgctactcgtttcgagtcaacttcaaaatcaacatttttgagttgaagttcatggatccaccgaattgcatga 13783720  T
Q  302 taca 305  Q
    ||||    
T  13783719 taca 13783716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 27244070 - 27244217
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| |||  ||||||||||||| | |||||||||| ||||||| | |||||| |||||   |||||||||||||||||||||||||||||||||    
T  27244070 cctcatttgtttggttcctaataaactcgacatgagagtttgttaaataagtattacaaaattgtaaactactatccataatggaaccaaactcggtgac 27244169  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaac 250  Q
    || ||| | ||| ||||| |||| |||| ||||| |||| || |||||    
T  27244170 atttccacgaccattgttgaaataatcaactactctttttgagtcaac 27244217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 29526876 - 29526678
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| || || | ||||||||||| ||||| ||||||      
T  29526876 cctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgtt 29526777  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatg 300  Q
    |||||| ||  ||||||| |||| |||||||| | |||||||||| || |||||| |||||||  |||| | | |||||| |||||||||| |||||||    
T  29526776 atctcctcttgctttgttgaaataatcagctattgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatg 29526678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 21824425 - 21824263
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||| ||   ||||||| |    |  |||||||||||||| || || |||||||||||    
T  21824425 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaagtaatcattacagtaacttgagctactatccataatagagccgaactcggtgac 21824326  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||||||||| |||| |||||||||| |||| || ||||| || ||| |||||||    
T  21824325 atctccacgacctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacatt 21824263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 300
Target Start/End: Complemental strand, 15455845 - 15455655
Alignment:
Q  111 gcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatctcccc 210  Q
    |||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| || || | ||||||||||| ||||| ||||||  |||||| |    
T  15455845 gcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgttatctcctc 15455746  T
Q  211 tacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatg 300  Q
    |  | ||||| |||| |||||||||| |||||||||| || |||||| |||||||  |||| | | |||||| |||||||||| |||||||    
T  15455745 ttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatg 15455655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 33973132 - 33972970
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| ||| ||| |||||||||  | |||||||||| ||||||| |  ||||| |||||   |||| |||| |||||||||||||||||||||||    
T  33973132 cctcatttgtttgtctcttaataaacttgacatgagagtttgttaaataagtgttacaaaattgtaaactattatctataatggaaccaaactcggtgac 33973033  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||| ||||| |||| ||||||||||  ||| || ||||| || ||| |||||||    
T  33973032 atctccacgaccattgttgaaataatcagctactcgttttgagtcaacctcgaaatcaacatt 33972970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 1602009 - 1602060
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1602009 cattctatcaaaactagcttataagctagtccaacaagctataagctagctt 1602060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 30582741 - 30582690
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30582741 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 30582690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 35670383 - 35670434
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35670383 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 35670434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 37658144 - 37658195
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37658144 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 37658195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 5086643 - 5086481
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||||||||||| | |||||||||| |||||| ||  ||    || |   ||||||||| |||||| |||||||| ||||||||    
T  5086643 cctcattcgcttgcctcctaataaactcgacatgagagtttgttaaatgggtcttggtaaagtaaatactactattcataatagaaccaaattcggtgac 5086544  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    ||| || |  || ||||| |||| |||||||||| |||| || |||||||||||| |||||||    
T  5086543 atcaccacagccattgttgaaataatcagctactcttttagagtcaacttcaaaatcaacatt 5086481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 1602082 - 1602133
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  1602082 cattctatcaaaactagcttataagctagtccaacaagctataagttagctt 1602133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 1602160 - 1602207
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1602160 tatcaaaacaagcttataagctagtccaacaagctataagctatctta 1602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 31619575 - 31619524
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  31619575 cattttatcaaaacaagcttataagctagtccaacaagctataaactagctt 31619524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 33982349 - 33982396
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  33982349 tatcaaaacaagcttataagctagtctaacaagctataagctagctta 33982396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 40061233 - 40061182
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  40061233 cattttattaaaacaagcttataagctagtccaacaagctataagctagctt 40061182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 43544930 - 43544977
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  43544930 tatcaaaacaagcttataagctagtccaacaagctataagttagctta 43544977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 585924 - 585971
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  585924 tatcaaaataagcttataagctagtccaacaagctataagttagctta 585971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 8932529 - 8932572
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  8932529 cattctatcaaaacaagcttataagctagtccaacaagttataa 8932572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 9806618 - 9806661
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  9806618 cattttatcaaaacaagcttataagctagtccaacaagctataa 9806661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 31436276 - 31436327
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  31436276 cattttatcaaaacaagtttataagttagtccaacaagctataagctagctt 31436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 33979681 - 33979634
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  33979681 tatcaaaacatgcttataaggtagtccaacaagctataagctagctta 33979634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 37708125 - 37708172
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  37708125 tatcaaaacaaggttataagctagtccaacaagctataaggtagctta 37708172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 39709873 - 39709924
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  39709873 cattctatcaaaacaagctcataagctagtccaacaacctatacgctagctt 39709924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 39870050 - 39870101
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  39870050 cattttatcaaaacaagcttataagctaatccaacaaactataagctagctt 39870101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 36121500 - 36121454
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  36121500 attctatcaaaacaagcttataagctaatccaataagctataagcta 36121454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 41406252 - 41406206
Alignment:
Q  36 atcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  41406252 atcaaaacaagcttataagatagtccaataagctataagctagctta 41406206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 21920840 - 21920877
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21920840 agcttataagctagtccaacaagctataagctagctta 21920877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 32535005 - 32535201
Alignment:
Q  107 atttgcttgcctcctaataaactcaatatgagag--tttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacat 204  Q
    ||||||||| ||| |||||||||| | |||||||  ||| ||||||| |   |||| || ||| | ||| ||||||| || |||||||| ||||||||||    
T  32535005 atttgcttgtctcttaataaactcgacatgagagagtttgttaaataagtgctacaaaagtggatgctattatccatgatagaaccaaattcggtgacat 32535104  T
Q  205 ctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||| | ||||||||| |||| |||||||||| |||  || | ||| || ||  |||||||  | |||| | ||||||| |||||||||||||||||    
T  32535105 ctccacgacctttgttgaaataatcagctactctttatgagttaacctcgaagtcaacatttgtaagttgaagttcatgtatccaccgaattgcatg 32535201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 46534467 - 46534427
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  46534467 aacaagcttataagctaatccaacaagctataagctagctt 46534427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 596146 - 596193
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  596146 tatcaaaacaagcttataagctagtccaacaagttatatcctagctta 596193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 31969495 - 31969542
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  31969495 cattttatcaaaacaagcttataagttagtccaacaatctataagcta 31969542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 35747095 - 35747044
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||| ||||||| || ||| ||||||||||||||||||||    
T  35747095 cattctatcaaaacaatcttataaacttgtcgaacaagctataagctagctt 35747044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 42833758 - 42833797
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataag 74  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  42833758 tatcaaaacaagcttatcagctagtccaacaagctataag 42833797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 43468039 - 43468090
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  43468039 cattttatcaaaacaaacttataagccagtccaacaaactataagctagctt 43468090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 44104605 - 44104656
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||| ||||||||||||| | ||||||||| ||||||||||||||    
T  44104605 cattctatcaagacaagcttataagtttgtccaacaaactataagctagctt 44104656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 31030798 - 31030836
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  31030798 tatcaaaacaagcttataagctagtccaacaaactataa 31030836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 42329584 - 42329630
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagct 76  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  42329584 cattttatcaaagcaagcttataaactagtccaacaagctataagct 42329630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 6476985 - 6476945
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  6476985 aacaagcttataagctaatccaagaagctataagctagctt 6476945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 27826764 - 27826728
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27826764 agcttataagctaatccaacaagctataagctagctt 27826728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 28494320 - 28494356
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28494320 agcttataagctaatccaacaagctataagctagctt 28494356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 42265317 - 42265353
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42265317 agcttataagctaatccaacaagctataagctagctt 42265353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 42329067 - 42329103
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42329067 agcttataagctaatccaacaagctataagctagctt 42329103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 43156623 - 43156587
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43156623 agcttataagctaatccaacaagctataagctagctt 43156587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 43337688 - 43337652
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43337688 agcttataagctaatccaacaagctataagctagctt 43337652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 30999378 - 30999425
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||| ||||    
T  30999378 tatcaaaacaagcttatgagctagtccaataagctataaactaactta 30999425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 44571002 - 44570955
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||||||  ||||| ||||||||||||||||||| |||||||||||||    
T  44571002 cattctacaaaaactagcttataagctagtccaataagctataagcta 44570955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 44818791 - 44818740
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||  |||||||| |||||||||||||||||||  |||||||||||||    
T  44818791 cattctacaaaaacaagtttataagctagtccaacaaattataagctagctt 44818740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 28235340 - 28235303
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  28235340 agcttataagctaatccaacaaactataagctagctta 28235303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 30523994 - 30524035
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| || || ||||||||||||||||||||||||    
T  30523994 aacaagcttatgagttaatccaacaagctataagctagctta 30524035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 48935290 - 48935253
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  48935290 agcttataaactaatccaacaagctataagctagctta 48935253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 4060407 - 4060371
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  4060407 agcttataagctaatccaacaaactataagctagctt 4060371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 6243922 - 6243886
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  6243922 agcttataagctaatccaacaagctataaactagctt 6243886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 28958166 - 28958202
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||| || |||||||||||||||||||||||    
T  28958166 agcttataagttaatccaacaagctataagctagctt 28958202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 35647471 - 35647435
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||| | |||||||||||||||||||||||    
T  35647471 agcttataagcaaatccaacaagctataagctagctt 35647435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 42328225 - 42328265
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| | |||| ||||||||||||||||    
T  42328225 aacaagcttataagctaattcaactagctataagctagctt 42328265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 46349924 - 46349964
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| || ||||| |||||||||||||||||    
T  46349924 aacaagcttataagttaatccaagaagctataagctagctt 46349964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 46672561 - 46672525
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  46672561 agcttataagctaatccaacaagttataagctagctt 46672525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 2439538 - 2439340
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   |||||||||    | |||||||||||||||||| ||||||||||||||    
T  2439538 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataaccattacagaagcttgaactactatccataatggagccaaactcggtgac 2439439  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| | ||||||||| |||| |||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||| ||||||||||| |||||    
T  2439438 atctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaacatttgagagttgaagttcatgtatccaccgaatcgcatg 2439340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 303
Target Start/End: Original strand, 9734469 - 9734670
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||| || |||||||||||||  |||| ||||||| || || ||||||||||||||    
T  9734469 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaattggtattacagaattggacactattatccatgatagagccaaactcggtgac 9734568  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    ||||||   ||| ||||| ||||  ||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||||||||||| ||| ||||||    
T  9734569 atctccatgaccattgttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatttgagagttgaagttcatggatccacctaatcgcatgg 9734668  T
Q  302 ta 303  Q
    ||    
T  9734669 ta 9734670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 34935137 - 34934939
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||    |||||||| |    |||||||||||||||||| ||||||||||||||    
T  34935137 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataatcgttacagaagtttaaactactatccataatggagccaaactcggtgac 34935038  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| | ||| ||||| |||| |||||||||| ||||  | ||||| || ||| |||||||   ||||| | ||||||| ||||||||||| |||||    
T  34935037 atctccacgaccattgttgaaataatcagctactcttttttagtcaacctcgaaatcaacatttgagagttgaagttcatgtatccaccgaatcgcatg 34934939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 303
Target Start/End: Original strand, 8968405 - 8968606
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||| ||  ||||||||||||  |||| ||||||| || ||||| ||||||||  |    
T  8968405 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaattggttttacagaattggacactattatccatgatagaaccgaactcggtacc 8968504  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| |  || ||||| ||||  ||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||||||||||||||| ||||||    
T  8968505 atctccacggccgttgttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatttgagagttgaagttcatggatccaccgaatcgcatgg 8968604  T
Q  302 ta 303  Q
    ||    
T  8968605 ta 8968606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 305
Target Start/End: Complemental strand, 15790091 - 15789888
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||| ||||||| | |||||||||| |||||   ||   |||||| ||  | ||||| ||||| || |||||||| ||||||||    
T  15790091 cctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaagtgatcgacagaaatgaatgctactgtccattatagaaccaaattcggtgac 15789992  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||||||||| |||| ||| ||||||  |||||| |||||||||||| |||||||   ||||| | |||||||||||||||||||||||||     
T  15789991 atctccacgacctttgttgaaataatctgctactcgtttcgagtcaacttcaaaatcaacattttcgagttgaagttcatggatccaccgaattgcatga 15789892  T
Q  302 taca 305  Q
    ||||    
T  15789891 taca 15789888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 14504138 - 14504336
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||||||||||| | |||||| ||| |||| || |  |||||||| ||| || |||||||||||||  ||||||| ||||||||    
T  14504138 cctcattcgcttgcctcctaataaactcgacatgagaattttttaagtatgtgttacagaagtggatattactatccataataaaaccaaattcggtgac 14504237  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    ||||||   ||||||||| |||| |||||||| | ||||  | ||||| || ||| |||||||  |||||| | |||| || |||||||||| ||||||    
T  14504238 atctccatgacctttgttgaaataatcagctattcttttaaagtcaacctcgaaatcaacatttgtgagttgaagttcttgtatccaccgaagtgcatg 14504336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 7041795 - 7041748
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7041795 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 7041748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 22978144 - 22978097
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22978144 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 22978097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 32111589 - 32111640
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32111589 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 32111640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 34785908 - 34785959
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34785908 attctatcaaaacaagcttataagctagtccaataagctataagctagctta 34785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 42167366 - 42167413
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42167366 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 42167413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 43860791 - 43860744
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43860791 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 43860744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 46115057 - 46115006
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46115057 attctatcaaaacaagcttataagctaatccaacaagctataagctagctta 46115006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 26307423 - 26307309
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||| ||||||||||||||||||| | | |||||||||||||||| |   |||| |||||  |||||||||||||||| || ||||| || |||||    
T  26307423 cctcatttacttgcctcctaataaactcgacaggagagtttattaaataagtgctacataattgaatactactatccataatagagccaaattccgtgac 26307324  T
Q  203 atctcccctaccttt 217  Q
    |||||| | ||||||    
T  26307323 atctccacgaccttt 26307309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 5506002 - 5505951
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  5506002 cattctatcaaaacaaacttataagctagtccaacaagttataagctagctt 5505951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 12122910 - 12122961
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  12122910 cattctacaaaaacaagcttataagctagtccaacaagctataagctagctt 12122961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 32390143 - 32390190
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  32390143 cattttatcaaaacaagcttataagctagtccaacaagctataagcta 32390190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 39129444 - 39129393
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  39129444 cattctatcaaaactagcttataagatagtccaacaagctataagctagctt 39129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 40374537 - 40374588
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  40374537 cattttatcaaaacaagcttataagctagtccaacaagctataagttagctt 40374588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 41888874 - 41888827
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  41888874 tatcaaaacaagcttataagctagtccaacaaactataagctagctta 41888827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 48072041 - 48071998
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48072041 tatcaaaacaagcttataagctagtccaacaagctataagctag 48071998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 50935778 - 50935731
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50935778 tatcaaaacaagcttataagctagtccaataagctataagctagctta 50935731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 46668406 - 46668360
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  46668406 tatcaaaacaagcttataagttagtccaacaagctataagctagctt 46668360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 13434482 - 13434586
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||| ||| |||| ||||||||||||| || |||||||||| ||||| | |||||||| ||  || ||||| |||||||||||||  ||||||||||||     
T  13434482 cctcttttacttgtctcctaataaacttaacatgagagtttgttaaaaatgaattacaaaacgggatactattatccataatggagtcaaactcggtgat 13434581  T
Q  203 atctc 207  Q
    |||||    
T  13434582 atctc 13434586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 42528096 - 42528136
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42528096 aacaagcttataagctagtccaacaagctataagctagctt 42528136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 36660165 - 36660216
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  36660165 cattttatcaaaacaagcttataagctaatccaacaaactataagctagctt 36660216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 36806992 - 36806941
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||||||    
T  36806992 cattttatcaaaacaagcttataagctagtccaacaagctaaaaactagctt 36806941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 39129365 - 39129318
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  39129365 tatcaaaacaagcttataagctagtccaacaagctatagactagctta 39129318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 41889455 - 41889498
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  41889455 tatcaaaacaagcttataaactagtccaacaagctataagctag 41889498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 42877305 - 42877258
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  42877305 tatcaaaacatgcttataagctagtccaagaagctataagctagctta 42877258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 32073625 - 32073722
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtg 200  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| || || | ||||||||||| ||||| ||||||    
T  32073625 cctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtg 32073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 39534970 - 39535022
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| ||||||||||||| |||||| |||||| |||||||||||    
T  39534970 cattctatcaaaaaaagcttataagcttgtccaataagctacaagctagctta 39535022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 6586335 - 6586292
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  6586335 cattttatcaaaacaagcttataagctagtccaacaaactataa 6586292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 50938275 - 50938318
Alignment:
Q  39 aaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||| |||||||||||||||||||||||||||||| ||||    
T  50938275 aaaacaaggttataagctagtccaacaagctataagctaactta 50938318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 8321475 - 8321511
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8321475 agcttataagctaatccaacaagctataagctagctt 8321511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 12122214 - 12122254
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  12122214 aacaagcttataagctaattcaacaagctataagctagctt 12122254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 17666674 - 17666634
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  17666674 aacaagcttataagctaattcaacaagctataagctagctt 17666634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 19274785 - 19274749
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  19274785 agcttataagctaatccaacaagctataagctagctt 19274749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 32999697 - 32999737
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  32999697 aacaagcttataagctaatccaagaagctataagctagctt 32999737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 34436019 - 34436055
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34436019 agcttataagctaatccaacaagctataagctagctt 34436055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 40980169 - 40980217
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||| |||||||||||| |||||||||||| |||||| |||||||||||    
T  40980169 cattttatcaaaacaagtttataagctagttcaacaaactataagctag 40980217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 41991728 - 41991764
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41991728 agcttataagctaatccaacaagctataagctagctt 41991764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 51980791 - 51980759
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataa 73  Q
    |||||||||||||||||||||||||||||||||    
T  51980791 aacaagcttataagctagtccaacaagctataa 51980759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 29704695 - 29704616
Alignment:
Q  106 catttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatg 185  Q
    |||| ||||||||||||||||| |||| |||||||||| |||||| ||||| |||  | ||  || ||||||||||||||    
T  29704695 cattcgcttgcctcctaataaattcaacatgagagttttttaaattggaatgacaataatgaatattactatccataatg 29704616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 48052429 - 48052386
Alignment:
Q  100 ttgcctcatttgcttgcctcctaataaactcaatatgagagttt 143  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||    
T  48052429 ttgcctcattagcttgcctcctaataaactcaacatgtgagttt 48052386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 48747474 - 48747427
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||||    
T  48747474 cattctacaaaaacaagcttataagctagtccaataaactataagcta 48747427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 1361726 - 1361692
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagc 79  Q
    ||||||||||||| |||||||||||||||||||||    
T  1361726 agcttataagctaatccaacaagctataagctagc 1361692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 6124771 - 6124734
Alignment:
Q  40 aaacaagcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  6124771 aaacaagcttataagatagtccaacaagttataagcta 6124734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 9558904 - 9558941
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| || |||||||||||||||||||||    
T  9558904 agcttataagctaatctaacaagctataagctagctta 9558941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 2651826 - 2651874
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaata 151  Q
    ||||||| | |||||||||||||||||| | |||||||||| |||||||    
T  2651826 cctcattcgtttgcctcctaataaactcgacatgagagtttgttaaata 2651874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 10809539 - 10809579
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  10809539 aacaagcttataagctaattcaagaagctataagctagctt 10809579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 12055559 - 12055595
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  12055559 agcttataagctaatccaacaaactataagctagctt 12055595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 45356458 - 45356498
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| | |||||||||||||| ||||||    
T  45356458 aacaagcttataagctaattcaacaagctataagttagctt 45356498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 48051049 - 48051013
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||| || |||||||||||||||||||||||    
T  48051049 agcttataagttaatccaacaagctataagctagctt 48051013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 301
Target Start/End: Complemental strand, 31291727 - 31291563
Alignment:
Q  138 gagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatctcccctacctttgttaaaattatcagctacta 237  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||| | ||||||| |||| |||||     
T  31291727 gagtttgttaaataggaattacagaattggatactattatccatgatggaaccaaactcggtgatatctcccctacctctattaaaataatcaactactt 31291628  T
Q  238 ttttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatgg 301  Q
    ||||| | ||||| |||||| |||||||  |||| | | ||||||| |||||| |||||||||||    
T  31291627 ttttcaattcaacctcaaaatcaacatttgtgagctgaagttcatgtatccactgaattgcatgg 31291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 305
Target Start/End: Original strand, 13065489 - 13065692
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||| ||||||| | |||||||||| ||||| | ||   |||||| ||| | ||||| ||||| ||||||||||| ||||||||    
T  13065489 cctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaaatgaccgacagaaatggatgctactgtccattatggaaccaaattcggtgac 13065588  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| || |||||||| |||| ||| ||||||  |||||| |||||||||||| |||||||   ||||| | |||||||||||||||||||||||||     
T  13065589 atctccactgcctttgttgaaataatccgctactcgtttcgagtcaacttcaaaatcaacattttcgagttgaagttcatggatccaccgaattgcatga 13065688  T
Q  302 taca 305  Q
    ||||    
T  13065689 taca 13065692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 19609174 - 19609374
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   ||| |||||||||  | |||| |||||||| || ||||| || |||||    
T  19609174 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataattattgcagaattggacattactgtccataatagagccaaattcagtgac 19609273  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||| ||||| |||| |||||||||| |||| || |||||||||||| ||||||| |  |||| | ||||||| ||||||||||| ||||||    
T  19609274 atctccacgaccattgttgaaataatcagctactctttttgagtcaacttcaaaatcaacatttaaaagttgaagttcatgaatccaccgaatcgcatgg 19609373  T
Q  302 t 302  Q
    |    
T  19609374 t 19609374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 103 - 306
Target Start/End: Complemental strand, 8724758 - 8724554
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||| ||||||| | |||||||||| |||||   ||   |||||| ||  | ||||| ||||| || |||||||| ||||||||    
T  8724758 cctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaagtgaccgacagaaatgaatgctactgtccattatagaaccaaattcggtgac 8724659  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||||||||| |||| ||| ||||||  |||||| |||||||||||| |||||||   ||||| |  ||||||||||||||||||||||||     
T  8724658 atctccacgacctttgttgaaataatctgctactcgtttcgagtcaacttcaaaatcaacattttcgagttgaaattcatggatccaccgaattgcatga 8724559  T
Q  302 tacaa 306  Q
    |||||    
T  8724558 tacaa 8724554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 18521833 - 18521672
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||||||  |||||||||  | |||||| ||| ||||||||| ||||||||||||| |||||||||  ||||| |||||||| || ||||     
T  18521833 cctcatttgcttgccttgtaataaacttcacatgagaatttgttaaatagggattacagaattggatactactatttataat-gaaccaaattcagtgat 18521735  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||||||||| |||| || ||||||| ||||| ||||||| |||||  |||||||    
T  18521734 atctcctcaacctttgttgaaataattagctacttttttctaatcaacctcaaagtcaacatt 18521672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 20587685 - 20587547
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||| ||| ||||||||||||||| | ||||||||||  ||||| ||  ||||||||||||  |||||||||||| || || || |||||||||||    
T  20587685 cctcattttcttacctcctaataaactcgacatgagagtttgataaattggtgttacagaattggacactactatccatgatagagccgaactcggtgac 20587586  T
Q  203 atctcccctacctttgttaaaattatcagctactatttt 241  Q
    |||||| | ||| ||||| |||| |||||||||| ||||    
T  20587585 atctccacgaccattgttgaaataatcagctactctttt 20587547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 20706164 - 20706026
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||| ||||||||||| | ||||||||||  ||||| ||  ||||||||||||  |||||||||||| || || || |||||||||||    
T  20706164 cctcatttgcttgccttctaataaactcgacatgagagtttgataaattggtgttacagaattggacactactatccatgatagagccgaactcggtgac 20706065  T
Q  203 atctcccctacctttgttaaaattatcagctactatttt 241  Q
    |||||| | ||| ||||| |||| | |||||||| ||||    
T  20706064 atctccacgaccattgttgaaataaccagctactctttt 20706026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 3033463 - 3033412
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3033463 cattctatcaaaactagcttataagctagtccaacaagctataagctagctt 3033412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 11575692 - 11575641
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11575692 cattctatcaaaacaaacttataagctagtccaacaagctataagctagctt 11575641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 11619190 - 11619337
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| | |||||||||||||||||| | |||||||||| |||||||     |||| |||||| || | ||||||| ||| |||||||| ||||||||    
T  11619190 cctcattcgtttgcctcctaataaactcgacatgagagtttgttaaataatttctacataattggatattgctatccacaatagaaccaaattcggtgac 11619289  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaac 250  Q
    |||||| | ||||||||| |||| ||| |||||| |||| || |||||    
T  11619290 atctccacgacctttgttgaaataatcggctactcttttagagtcaac 11619337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 36961993 - 36962155
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||    | |||  ||||| ||||  ||||||||||||| || || |||||||     
T  36961993 cctcatttgcttgcctcctaataaactcaacatgagagtttgttaagtaactgtgacaccattggatactcttatccataatggagccgaattcggtgat 36962092  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    ||||||    |||||||| |||| |||||||||| |||| || ||||| || ||| |||||||    
T  36962093 atctccatggcctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacatt 36962155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 20017335 - 20017383
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20017335 cattttatcaaaacaagcttataagctagtccaacaagctataagctag 20017383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 1924017 - 1923966
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  1924017 cattttatcaaagcaagcttataagctagtccaacaagctataagctagctt 1923966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 3033384 - 3033337
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  3033384 tatcaaaacaagcttataagctagtctaacaagctataagctagctta 3033337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 4559509 - 4559560
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4559509 cattctatcaagacaagcttataagcttgtccaacaagctataagctagctt 4559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 8520562 - 8520515
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  8520562 tatcaaaacaagcttataagctagtccaacaagctataagttagctta 8520515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 42765327 - 42765165
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||    | |||  ||||| ||||  ||||||||||||| || || ||| |||     
T  42765327 cctcatttgcttgcctcctaataaactcaacatgagagtttgttaagtaattgtgacaccattggatactcttatccataatggagccgaattcgatgat 42765228  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    ||||||    |||||||| |||| |||||||||| |||| || ||||| || ||| |||||||    
T  42765227 atctccatggcctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacatt 42765165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 8520637 - 8520586
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  8520637 cattctatcaaaactagcttataagctagtctaacaagctatatgctagctt 8520586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 13019064 - 13019013
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  13019064 cattttatcaaaacaaacttataagctagtccaacaagttataagctagctt 13019013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 15524427 - 15524380
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  15524427 tatcaaaacaaggttataagctagtctaacaagctataagctagctta 15524380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 7157538 - 7157578
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  7157538 aacaagcttataagttagtccaacaagctataagctagctt 7157578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3078570 - 3078617
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||    
T  3078570 cattttatcaaaacaagtttataagctagtccaacaagttataagcta 3078617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 5050146 - 5050183
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5050146 agcttataagctaatccaacaagctataagctagctta 5050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 6789658 - 6789694
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6789658 agcttataagctaatccaacaagctataagctagctt 6789694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 11784237 - 11784273
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  11784237 agcttataagctaatccaacaagctataagctagctt 11784273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 13359521 - 13359561
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  13359521 aacaagcttataagctaatccaacaagctatatgctagctt 13359561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 15498700 - 15498664
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15498700 agcttataagctaatccaacaagctataagctagctt 15498664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 16218352 - 16218388
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  16218352 agcttataagctaatccaacaagctataagctagctt 16218388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 24171420 - 24171384
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24171420 agcttataagctaatccaacaagctataagctagctt 24171384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 29525365 - 29525401
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29525365 agcttataagctaatccaacaagctataagctagctt 29525401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 34589970 - 34590006
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34589970 agcttataagctaatccaacaagctataagctagctt 34590006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 35766618 - 35766578
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  35766618 aacaagcttataagctaatccaagaagctataagctagctt 35766578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 36944280 - 36944320
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  36944280 aacaagcttataagttagtctaacaagctataagctagctt 36944320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 37530789 - 37530825
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37530789 agcttataagctaatccaacaagctataagctagctt 37530825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 41734313 - 41734349
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41734313 agcttataagctaatccaacaagctataagctagctt 41734349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 42709366 - 42709330
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42709366 agcttataagctaatccaacaagctataagctagctt 42709330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 20768897 - 20768940
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||    
T  20768897 cattttatcaaaacaagcttataagatagtccaacaaactataa 20768940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 17540316 - 17540278
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagcttaa 83  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  17540316 agcttataagctaatccaacaagctataagctaacttaa 17540278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 2891014 - 2891051
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctag 78  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  2891014 aacaagcttataagttagtccaacaaactataagctag 2891051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 5102743 - 5102784
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||| |||||||||||||||||||| ||||| |||||||||    
T  5102743 aacaaacttataagctagtccaacaatctatacgctagctta 5102784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 76469 - 76433
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  76469 agcttataagctaatccaaaaagctataagctagctt 76433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 7615046 - 7615082
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  7615046 agcttataagctaatccaacaagctataaggtagctt 7615082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 10815118 - 10815082
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  10815118 agcttataagctaatccaacaaactataagctagctt 10815082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 12280836 - 12280800
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  12280836 agcttataagctaatccaacaaactataagctagctt 12280800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 36761117 - 36761081
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  36761117 agcttataagctaatccaacaacctataagctagctt 36761081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 305
Target Start/End: Original strand, 2255 - 2458
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||| ||||||| | |||||||||| ||||| | ||   |||||| ||| | ||||| ||||| ||||||||||| ||||||||    
T  2255 cctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaaatgaccgacagaaatggatgctactgtccattatggaaccaaattcggtgac 2354  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| || |||||||| |||| ||| ||||||  |||||| |||||||||||| |||||||   ||||| | |||||||||||||||||||||||||     
T  2355 atctccactgcctttgttgaaataatccgctactcgtttcgagtcaacttcaaaatcaacattttcgagttgaagttcatggatccaccgaattgcatga 2454  T
Q  302 taca 305  Q
    ||||    
T  2455 taca 2458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 11551 - 11749
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   |||||||||      ||||||| |||||||||| ||||||||||||||    
T  11551 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaatattcattacagaagcttaaactactacccataatggagccaaactcggtgac 11650  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| ||||||||||| |||| |||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||| ||||||||||| |||||    
T  11651 atctccactacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaacatttgagagttgaagttcatgtatccaccgaatcgcatg 11749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 294
Target Start/End: Original strand, 21085016 - 21085208
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | ||||||||||  |||||  |  ||||| ||||||  ||||||||||||||| ||||| |||||||||||    
T  21085016 cctcatttgcttgcctcctaataaactcgacatgagagtttgataaatttgtgttacaaaattggacactactatccataatagaaccgaactcggtgac 21085115  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaat 294  Q
    |||||| | ||| ||||| |||| |||||||||| |||| || ||||| || ||| |||||||   ||||| | |||||||||||||||||||    
T  21085116 atctccacgaccattgttgaaataatcagctactcttttagagtcaacctcgaaatcaacatttgagagttgaagttcatggatccaccgaat 21085208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 302
Target Start/End: Complemental strand, 31426497 - 31426297
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||||||| |||||||||| | |||||||||| |||||||   ||| |||||||||  |||||| |||||||| || ||||| ||||||||    
T  31426497 cctcatttgcttgcctcttaataaactcgacatgagagtttgttaaataattattgcagaattggacactactgtccataatagagccaaattcggtgac 31426398  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||| ||||| |||| |||||||||| |||| || || ||||||||| ||||||| |  |||| | ||||||| ||||||||||| ||||||    
T  31426397 atctccacgaccattgttgaaataatcagctactctttttgagtccacttcaaaatcaacatttaaaagttgaagttcatgaatccaccgaatcgcatgg 31426298  T
Q  302 t 302  Q
    |    
T  31426297 t 31426297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 34071383 - 34071580
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| | |||| |||||||||| || | |||||||||| |||||||||  ||||| || ||| ||| |||||| ||||| |||||||| ||||||||    
T  34071383 cctcattcgtttgcttcctaataaattcgacatgagagtttgttaaataggtgttacaaaagtggataccactatctataattgaaccaaattcggtgac 34071482  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||| ||| ||| ||||| || | |||||||||| |||| || ||||| || ||| |||||||| |||||| | ||||||| |||||||||||||||||    
T  34071483 atct-cccaaccattgttgaagtaatcagctactcttttagagtcaacctcgaaatcaacattagtgagttgaagttcatgaatccaccgaattgcatg 34071580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 321
Target Start/End: Complemental strand, 20471224 - 20471005
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||| ||    | ||| |||||| ||||| |||||||||||||||| || |||||||     
T  20471224 cctcatttgcttgcctcctaataaactctacatgagagtttgttaagtaaatgtgacacaattggatactattatccataatggaaccgaattcggtgat 20471125  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    ||||||    |||||||| ||||  ||||||||| |||| || ||||| || ||| |||||||| | |||| | |||| || |||||||| | |||||||    
T  20471124 atctccatggcctttgttgaaatagtcagctactcttttagagtcaacctcgaaatcaacattagttagttgaagttcttgtatccaccgtagtgcatgg 20471025  T
Q  302 tacaatctccaagcttctcc 321  Q
    || || | | ||||||||||    
T  20471024 tataaacccaaagcttctcc 20471005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 302
Target Start/End: Complemental strand, 18777319 - 18777124
Alignment:
Q  108 tttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatctc 207  Q
    |||||||||||||||||||||| || |  ||||||| ||| ||| || |||||  || || ||||||||||||||||||| ||| | ||  ||| ||||     
T  18777319 tttgcttgcctcctaataaacttaacacaagagtttcttacataagagttacaatataggatactactatccataatggatccacattcaatgatatctt 18777220  T
Q  208 ccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatg-agttatgttcatggatccaccgaattgcatggt 302  Q
    ||||  | || || |||| |||||||||| ||||||||||||| || ||| |||||||  || | ||| | |||||||||||||||||||||||||    
T  18777219 cccttgcattattgaaataatcagctacttttttcgaatcaacctcgaaatcaacatttgtgaacttaaggtcatggatccaccgaattgcatggt 18777124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 18109744 - 18109795
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18109744 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 18109795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 33179026 - 33178979
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33179026 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 33178979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 36601002 - 36600955
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601002 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 36600955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 38928519 - 38928570
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38928519 cattctatcaaaactagcttataagctagtccaacaagctataagctagctt 38928570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 27072410 - 27072248
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||    | |||  ||||| ||||  ||||||||||||| || || |||||||     
T  27072410 cctcatttgcttgcctcctaataaactcaacatgagagtttgttaagtaactgtgacaccattggatactcttatccataatggagccgaattcggtgat 27072311  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    ||||||    |||||||| |||| |||||||||| |||| || ||||| || ||| |||||||    
T  27072310 atctccatggcctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacatt 27072248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 14452365 - 14452320
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagct 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14452365 tatcaaaacaagcttataagctagtccaacaagctataagctagct 14452320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 28125034 - 28125087
Alignment:
Q  29 acattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  28125034 acattctattaaaacaaacttataagctagtccaacaagctataagctagctta 28125087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 6319602 - 6319555
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6319602 tatcaaaacaagcttataagctagtccaacaagctgtaagctagctta 6319555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 11447309 - 11447258
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  11447309 attctatcaaaacaaggttataagctagtccagcaagctataagctagctta 11447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 40862233 - 40862284
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  40862233 cattttatcaaaacaagcttataagctagtccaacaagctataaactagctt 40862284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 8341184 - 8341236
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  8341184 cattctatcaaagtaagcttataagctagtccaacaagttataagctagctta 8341236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 44526016 - 44526068
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  44526016 cattctatcaaaacaagtttataagcttgtccaacaagctaaaagctagctta 44526068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 6322174 - 6322221
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  6322174 tatcaaaacaagtttctaagctagtccaacaagctataagctagctta 6322221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 10247412 - 10247459
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10247412 cattttatcaaaacaagcttataagctagtccaacaaactataagcta 10247459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 26340063 - 26340114
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  26340063 cattttatcaaaacaagcttataagctagtccaacaagttataagttagctt 26340114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 33182603 - 33182650
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  33182603 tatcaaaacaagcttataagctagtcctacgagctataagctagctta 33182650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 36602770 - 36602813
Alignment:
Q  39 aaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  36602770 aaaacaagcttatcagctagtccaacaagctataagctagctta 36602813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 37241018 - 37240967
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  37241018 attctatcaaaacaaacttataagctagtctaacaagttataagctagctta 37240967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 38928598 - 38928645
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  38928598 tatctaaacaagcttataagctagtccaacaaactataagctagctta 38928645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 39532132 - 39532085
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  39532132 cattttatcaaaacaaacttataagctagtccaacaagctataagcta 39532085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 7183316 - 7183362
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  7183316 tatcaaaacaagcttataaactagtccaacaaactataagctagctt 7183362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 6432225 - 6432188
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6432225 agcttataagctagtccaacaagctataagctagctta 6432188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 300
Target Start/End: Complemental strand, 7861646 - 7861453
Alignment:
Q  104 ctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgaca 203  Q
    ||||||||||||||||||||||||    | |||||||||| ||||| ||  ||| || || ||| || || | ||||||||||| ||||| | |||   |    
T  7861646 ctcatttgcttgcctcctaataaa----acatgagagtttgttaaaaagatattgcaaaactggatagtattctccataatggatccaaatttggtatta 7861551  T
Q  204 tctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatg 300  Q
    ||||| ||  |||||||||||| |||||||| | ||||| |||| || |||||| |||||||  |||| | | |||||| |||||||||| |||||||    
T  7861550 tctcctctggctttgttaaaataatcagctattgttttcaaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatg 7861453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 10361448 - 10361412
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||||||||||||||||||||    
T  10361448 agcttataagctagtccaacaagctataagctagctt 10361412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 15265370 - 15265422
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||| ||||    
T  15265370 cattctattaaaacaagcttataagctagcccaagaagctataagctaactta 15265422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 1086108 - 1086061
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||||    
T  1086108 tatcaaaacaagcttataagttagtttaacaagctataagctagctta 1086061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 38245929 - 38245980
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||| |||||||||||||||||| |||||||| || ||||||||||||||    
T  38245929 cattctttcaaaacaagcttataagttagtccaataaactataagctagctt 38245980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 10959587 - 10959629
Alignment:
Q  40 aaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  10959587 aaacaagcttataagctagtccaataagttataagctagctta 10959629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 45376964 - 45376927
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  45376964 agcttataagctagtccaacaagctataaactagctta 45376927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 5774152 - 5774112
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  5774152 aacaagcttataagctaatccaacaagctataaactagctt 5774112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 11018076 - 11018112
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  11018076 agcttataagctaatccaacaagctataagctagctt 11018112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 12160958 - 12160994
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12160958 agcttataagctaatccaacaagctataagctagctt 12160994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 30523664 - 30523628
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30523664 agcttataagctaatccaacaagctataagctagctt 30523628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 34245301 - 34245265
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34245301 agcttataagctaatccaacaagctataagctagctt 34245265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 36936117 - 36936153
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  36936117 agcttataagctaatccaacaagctataagctagctt 36936153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 39241205 - 39241241
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39241205 agcttataagctaatccaacaagctataagctagctt 39241241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 24520264 - 24520299
Alignment:
Q  47 cttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| ||||||||||||||||||||||||    
T  24520264 cttataagctaatccaacaagctataagctagctta 24520299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 41162566 - 41162640
Alignment:
Q  111 gcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatg 185  Q
    |||| ||||||||||||||||||||||||||||  ||||| ||||| |||  | ||  || ||||||||||||||    
T  41162566 gcttacctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatg 41162640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 42097955 - 42097992
Alignment:
Q  44 aagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  42097955 aagcttataagctaatccaagaagctataagctagctt 42097992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 43496217 - 43496180
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  43496217 agcttataagctaatgcaacaagctataagctagctta 43496180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 1876077 - 1876113
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  1876077 agcttataagctaatccaacaaactataagctagctt 1876113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 16496660 - 16496696
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  16496660 agcttataaactaatccaacaagctataagctagctt 16496696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 38324293 - 38324257
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| | |||||||||||||||||||||    
T  38324293 agcttataagctaattcaacaagctataagctagctt 38324257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 42519769 - 42519733
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| | |||||||||||||||||||||    
T  42519769 agcttataagctaatgcaacaagctataagctagctt 42519733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 961 - 814
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   ||||||||| | |   ||| ||||||||||||||||||||||||||||    
T  961 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataatcattacagaaattgaagctattatccataatggaaccaaactcggtgac 862  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaac 250  Q
    |||||| | ||||||||| |||| || ||||||| |||| ||||||||    
T  861 atctccacgacctttgttgaaataattagctactctttttgaatcaac 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 103 - 302
Target Start/End: Complemental strand, 4180019 - 4179819
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||   ||| |||||||||  |||||| | |||||| || ||||| || |||||    
T  4180019 cctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataattattgcagaattggacactactgttcataatagagccaaattcagtgac 4179920  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||| ||||| |||| |||||||||| ||||  | |||||||||||| ||||||| |  |||| | ||||||| ||||||||||| ||||||    
T  4179919 atctccacgaccattgttgaaataatcagctactcttttttagtcaacttcaaaatcaacatttaaaagttgaagttcatgaatccaccgaatcgcatgg 4179820  T
Q  302 t 302  Q
    |    
T  4179819 t 4179819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 22161799 - 22161661
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||||||||||| | |||||||||| |||| || | |||||| |||||| |||||||||||||||| |||||||| | |||||     
T  22161799 cctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtattacaaaattggatactactatccataatagaaccaaatttggtgat 22161700  T
Q  203 atctcccctacctttgttaaaattatcagctactatttt 241  Q
    ||||||   ||||||||| |||| |||||||||| ||||    
T  22161699 atctccatgacctttgttgaaataatcagctactctttt 22161661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 26418806 - 26419004
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| || || | ||||||||||| ||||| ||||||      
T  26418806 cctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgtt 26418905  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatg 300  Q
    |||||| ||  | ||||| |||| |||||||||| |||||||||| || |||||| |||||||  |||| | | |||||| |||||||||| |||||||    
T  26418906 atctcctcttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatg 26419004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 32108474 - 32108276
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| || || | ||||||||||| ||||| ||||||      
T  32108474 cctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgtt 32108375  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgag-ttatgttcatggatccaccgaattgcatg 300  Q
    |||||| ||  | ||||| |||| |||||||||| |||||||||| || |||||| |||||||  |||| | | |||||| |||||||||| |||||||    
T  32108374 atctcctcttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatg 32108276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 11644797 - 11644650
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| |||||||||||||||||| | |||||||||| ||||||| |  |||||||| ||| | ||||| | |||||| |||||||| || |||||    
T  11644797 cctcatttgtttgcctcctaataaactcgacatgagagtttgttaaataagtgttacagaaatggatgctactgtgcataatagaaccaaagtcagtgac 11644698  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaac 250  Q
    |||| | | ||||||||| |||| |||||||||| |||| || |||||    
T  11644697 atcttcacgacctttgttgaaataatcagctactctttttgagtcaac 11644650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 21182686 - 21182555
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| |||||||||||||||||| | |||||||||| ||||||| |   |||| |||||| | |||||||||||||| |||||||| || |||||    
T  21182686 cctcatttgtttgcctcctaataaactcgacatgagagtttgttaaataagtgctacataattggatgctactatccataatagaaccaaattcagtgac 21182587  T
Q  203 atctcccctacctttgttaaaattatcagcta 234  Q
    |||||| | ||||||||| |||| ||| ||||    
T  21182586 atctccacaacctttgttgaaataatcggcta 21182555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 294
Target Start/End: Complemental strand, 29601056 - 29600864
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||| | ||||||||||  ||||| ||  ||||||||||||  ||| || ||||| || || || |||||||||||    
T  29601056 cctcatttgcttgcctcctaataaactcgacatgagagtttgataaattggtgttacagaattggacactgctgtccatgatagagccgaactcggtgac 29600957  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaat 294  Q
    |||||| | ||| ||||| |||| |||||||| | |||| || || || || ||| |||||||   ||||| | ||||||| |||||||||||    
T  29600956 atctccacgaccattgttgaaataatcagctattcttttagagtctacctcgaaatcaacatttgagagttgaagttcatgtatccaccgaat 29600864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 3795993 - 3796044
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3795993 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 3796044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 4640127 - 4640174
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4640127 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 4640174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 5698196 - 5698145
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5698196 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 5698145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 14390492 - 14390441
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14390492 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 14390441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 265
Target Start/End: Original strand, 40454625 - 40454768
Alignment:
Q  123 ataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacatctcccctacctttgttaa 222  Q
    ||||||| || ||||||||||  || ||| ||  |||| |||||| |||||||||||||||||  |||||| |||||||||||| |||  ||| | ||||    
T  40454625 ataaactaaacatgagagtttggtagataagagctacaaaattggatactactatccataatgagaccaaattcggtgacatctacccctcctctattaa 40454724  T
Q  223 aat-tatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    | |  |||||||||||||||||||||||| |||||| |||||||    
T  40454725 agtaaatcagctactattttcgaatcaacctcaaaatcaacatt 40454768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 44109966 - 44110013
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44109966 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 44110013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 44299978 - 44300025
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44299978 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 44300025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 38532724 - 38532924
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| ||||||||| |||||||||| | |||||||||| |||| || | |||| | || |   |||| || |||||||| || ||||| |||||  |    
T  38532724 cctcattcgcttgcctcataataaactcgacatgagagtttgttaagtaagtattagaaaagtaaatactgctgtccataatagagccaaattcggtagc 38532823  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| | ||||||||| |||| |||||||||| | || || |||||||||||| |||||||  | |||| | |||| || |||||||||||||| |||    
T  38532824 atctccacgacctttgttgaaataatcagctactctgttagagtcaacttcaaaatcaacatttgtaagttgaagttcttgtatccaccgaattgcgtgg 38532923  T
Q  302 t 302  Q
    |    
T  38532924 t 38532924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 35179890 - 35179839
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  35179890 cattttatcaaaacaaacttataagctagtccaacaagctataagctagctt 35179839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 39325546 - 39325597
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  39325546 cattttatcaaaacaagcttataagctagttcaacaagctataagctagctt 39325597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 31496680 - 31496628
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  31496680 cattctattaaaacaagtttataagctagtccaagaagctataagctagctta 31496628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 23259150 - 23259103
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  23259150 tatcaaaacaaacttataagctagtccaacaagctataagctaactta 23259103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 31656439 - 31656388
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  31656439 cattttatcaaaacaagcttgtaagctagtccaacaagctataaactagctt 31656388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 42628247 - 42628298
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  42628247 cattttatcaaagcaagcttataagctagtccaacaagctataaactagctt 42628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 9223905 - 9223859
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9223905 tatcaaaacaagcttataagttagtccaacaagctataagttagctt 9223859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 5698568 - 5698527
Alignment:
Q  40 aaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  5698568 aaacaagcttataagttagtccaacaagctataagctagctt 5698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 38058808 - 38058768
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  38058808 aacaaggttataagctagtccaacaagctataagctagctt 38058768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 4361089 - 4361136
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||    
T  4361089 cattctattaaaacaagcttataagctagtccaataaactataagcta 4361136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 11756906 - 11756953
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  11756906 tatcaaaacgagcttataagctagtccaacaagtcataagctagctta 11756953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 30899451 - 30899502
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||||||||||  | |||||||||||||||||||||||||||||||||    
T  30899451 cattttatcaaaacagacatataagctagtccaacaagctataagctagctt 30899502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 43847463 - 43847510
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  43847463 tatcaaaactagcttataagctagtccgacaaactataagctagctta 43847510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 25594844 - 25595006
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| || ||||||||||||||||| | |||||||||| |||||||||  ||    || |   |||| || ||||| || |||||||| |||||||     
T  25594844 cctcattcgcctgcctcctaataaactcgacatgagagtttgttaaataggtcttggtaaagtaaatactgctgtccattatagaaccaaattcggtgat 25594943  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    ||| || | ||| ||||| |||| ||||||| || |||| || |||||||||||| |||||||    
T  25594944 atcaccacgaccattgttgaaataatcagctgctcttttagagtcaacttcaaaatcaacatt 25595006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 27527264 - 27527138
Alignment:
Q  177 tccataatggaaccaaactcggtgacatctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-at 275  Q
    |||||||| |||||||| |||||   |||||| |  |||||||  |||| |||||||||| |||| || |||||||||||| |||||||  | |||| |     
T  27527264 tccataatagaaccaaattcggtagtatctccacggcctttgtagaaataatcagctactcttttagagtcaacttcaaaatcaacatttgtaagttgaa 27527165  T
Q  276 gttcatggatccaccgaattgcatggt 302  Q
    |||| || |||||||||||||||||||    
T  27527164 gttcttgtatccaccgaattgcatggt 27527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 44502630 - 44502580
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||||||||||  | ||||| |||||||||||||||||    
T  44502630 attctatcaaaacaagcttataagtcaatccaataagctataagctagctt 44502580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 2459689 - 2459726
Alignment:
Q  44 aagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||||||||||    
T  2459689 aagcttataagctaatccaacaagctataagctagctt 2459726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 44278009 - 44278046
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||| |||||||    
T  44278009 agcttataagctagtccaacaagctataagttagctta 44278046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 11420379 - 11420443
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgg 167  Q
    |||||||| ||||||||||||||||||| | |||||||||| ||||| ||  |||||| ||||||    
T  11420379 cctcatttacttgcctcctaataaactcgacatgagagtttgttaaaaagatattacaaaattgg 11420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 27747662 - 27747626
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27747662 agcttataagctaatccaacaagctataagctagctt 27747626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 30358129 - 30358093
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30358129 agcttataagctaatccaacaagctataagctagctt 30358093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 34086269 - 34086221
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||||||||||||||| ||||||||||| ||| |||| |||||||||||    
T  34086269 cattctatcaaaacaaacttataagctaatccgacaaactataagctag 34086221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 38815593 - 38815629
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38815593 agcttataagctaatccaacaagctataagctagctt 38815629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 39325666 - 39325630
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39325666 agcttataagctaatccaacaagctataagctagctt 39325630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 41865346 - 41865306
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  41865346 aacaagcttataagctaatccaagaagctataagctagctt 41865306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 46315732 - 46315768
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  46315732 agcttataagctaatccaacaagctataagctagctt 46315768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 50586223 - 50586259
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  50586223 agcttataagctaatccaacaagctataagctagctt 50586259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 42159677 - 42159630
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| | | ||||||| ||||||||||||||||||||||||    
T  42159677 tatcaaaacaaacatttaagctattccaacaagctataagctagctta 42159630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 18545626 - 18545659
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaa 63  Q
    |||| |||||||||||||||||||||||||||||    
T  18545626 cattttatcaaaacaagcttataagctagtccaa 18545659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 2937396 - 2937356
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  2937396 aacaaacttataagctaattcaacaagctataagctagctt 2937356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 11332897 - 11332861
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||||| |||||| |||||||    
T  11332897 agcttataagctagtccaacaaactataaactagctt 11332861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 11490918 - 11490882
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||||| |||||| |||||||    
T  11490918 agcttataagctagtccaacaaactataaactagctt 11490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 11823639 - 11823603
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  11823639 agcttataagctaatccaacaagctataaactagctt 11823603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 38667261 - 38667225
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaa 66  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  38667261 cattttatcaaaacaagcttataagctagttcaacaa 38667225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 42330265 - 42330221
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataag 74  Q
    |||||||  ||||||||||||||||||| |||||||| |||||||    
T  42330265 cattctacaaaaacaagcttataagctaatccaacaaactataag 42330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 45900224 - 45900188
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  45900224 agcttataagctaatccaacaagctataaactagctt 45900188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 47326628 - 47326664
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  47326628 agcttataagctaatccaacaaactataagctagctt 47326664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 58)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 47783039 - 47782841
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||| ||  |||||| || ||| |  || | ||||||||||| ||||| ||||||      
T  47783039 cctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggattgtattctccataatggatccaaattcggtgtt 47782940  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| ||  ||||||| |||| |||||||||| |||||||||| || |||||| |||||||  |||||| | |||||| ||||||||||||||||||    
T  47782939 atctcctcttgctttgttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttgtgagttaaagttcattgatccaccgaattgcatg 47782841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 303
Target Start/End: Complemental strand, 25553297 - 25553096
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| ||  ||||||||||||  |||| ||||||| || || || |||||||| ||    
T  25553297 cctcatttgcttgcctcctaataaactcaacatgagagtttgttaaattggttttacagaattggacactattatccatgatagagccgaactcggtaac 25553198  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatgg 301  Q
    |||||| |  || ||||| ||||  ||||||||| |||| || ||||| || ||| |||||||   ||||| | ||||||||||||||||||| || |||    
T  25553197 atctccacggccattgttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatttgagagttgaagttcatggatccaccgaatcgcgtgg 25553098  T
Q  302 ta 303  Q
    ||    
T  25553097 ta 25553096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 40687009 - 40686862
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||| ||| |||| ||||||||| | |||||||||| |||||||| ||||||| ||||||  |||||||||| |||||||| |||| | ||| |     
T  40687009 cctcatttgtttgtctcccaataaactccacatgagagtttgttaaatagaaattacataattggacactactatccttaatggaagcaaatttggttat 40686910  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaac 250  Q
    |||||| | |||||| ||||||| || |||||||||||||||||||||    
T  40686909 atctcctcgacctttcttaaaataattagctactattttcgaatcaac 40686862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 300
Target Start/End: Original strand, 20089076 - 20089274
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||| |||| ||| |||||||||  | |||||||||||||||||| ||| | || |||||| ||||| ||||||||||||| ||||| ||||||||    
T  20089076 cctcatttacttgtctcgtaataaacttgacatgagagtttattaaatatgaactgcataattggatactattatccataatggacccaaattcggtgac 20089175  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacattaatgagtt-atgttcatggatccaccgaattgcatg 300  Q
    |||||| | | ||||||| ||||  |||| |||| |||| || ||||| |||||| |||||||    |||| | ||||||| |||||||||||||||||    
T  20089176 atctcctcgatctttgttgaaatagtcagttactctttttgagtcaacctcaaaatcaacatttgcaagttgaagttcatgaatccaccgaattgcatg 20089274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 17459448 - 17459286
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||||||||||| | |||||||||| |||| || |  ||||| || ||| || ||||||||||||| |||||||| |||||||     
T  17459448 cctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtgttacaaaagtggatattactatccataatagaaccaaattcggtgat 17459349  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    ||||||   ||||||||| |||| |||| ||||| |||| || ||||| || ||| |||||||    
T  17459348 atctccatgacctttgttgaaataatcaactactcttttagagtcaacctcgaaatcaacatt 17459286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 19912743 - 19912692
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19912743 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 19912692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 30411281 - 30411332
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30411281 cattttatcaaaacaagcttataagctagtccaacaagctataagctagctt 30411332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 48953095 - 48953048
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48953095 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 48953048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 13905888 - 13906008
Alignment:
Q  104 ctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgaca 203  Q
    |||||||| |||||| |||||||||| || |||||||| | ||||| | |||||||| || ||| ||||  ||||||||||||| ||||||||||||| |    
T  13905888 ctcatttgtttgccttctaataaacttaacatgagagtatgttaaaaatgaattacaaaactggatacttttatccataatggagccaaactcggtgata 13905987  T
Q  204 tctcccctacctttgttaaaa 224  Q
    ||||   | ||||||||||||    
T  13905988 tctcttttgcctttgttaaaa 13906008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 43590599 - 43590552
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43590599 tatcaaaacaaacttataagctagtccaacaagctataagctagctta 43590552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 45549723 - 45549672
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  45549723 cattttatcaaaacaagcttataagctagcccaacaagctataagctagctt 45549672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 50790889 - 50790842
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50790889 tatcaaaacaagcttataagctagtccaacaagttataagctagctta 50790842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 50792450 - 50792497
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50792450 tatcaaaacaagcttataagctagtccaacaagctataaactagctta 50792497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 15065953 - 15065791
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| |||||||||||||||||||| | |||||||||| |||| || | |||| | || |   ||||  | |||||||| |||||||| |||||  |    
T  15065953 cctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtattagaaaagtaaatactgttgtccataatagaaccaaattcggtagc 15065854  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| |  |||||||| |||| |||| ||||| |||| || |||||||||||| |||||||    
T  15065853 atctccacggcctttgttgaaataatcaactactcttttagagtcaacttcaaaatcaacatt 15065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 49648859 - 49648901
Alignment:
Q  40 aaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49648859 aaacaagcttataagctagtccaacaagctataagctagctta 49648901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 55660610 - 55660564
Alignment:
Q  36 atcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  55660610 atcaaaacaagtttataagctagtccaacaagctataagctagctta 55660564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 10658917 - 10658962
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagct 80  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  10658917 tatcaaaacaagcttataagctagtccaataagctataagctagct 10658962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 10873062 - 10873107
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagct 80  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  10873062 tatcaaaacaagcttataagctagtccaataagctataagctagct 10873107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 48368997 - 48369050
Alignment:
Q  29 acattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  48368997 acattctatcaaaacaatcttataagctagtccaacaagctatacactagctta 48369050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 7113627 - 7113667
Alignment:
Q  39 aaaacaagcttataagctagtccaacaagctataagctagc 79  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7113627 aaaacaagcttataagctagtccaacaagctataagctagc 7113667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 13200888 - 13200744
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||||||||||||||||| ||||| | |||||||||| ||||| ||  |||||| || ||  |  || ||||||||||| | | ||| |||||||     
T  13200888 cctcatttgcttgcctcctaatgaactcgacatgagagtttgttaaaaagatattacaaaactgaatgttattatccataatgcatctaaattcggtgat 13200789  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatc 247  Q
     ||||| || | ||||||||||| |||| ||||| ||||||||||    
T  13200788 gtctcctctgcttttgttaaaataatcaactactgttttcgaatc 13200744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 14269864 - 14269904
Alignment:
Q  42 acaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14269864 acaagcttataagctagtccaacaagctataagctagctta 14269904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 27531899 - 27531851
Alignment:
Q  31 attctatcaaaacaagcttataagctagtccaacaagctataagctagc 79  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  27531899 attctatcaaaacaagcttataaactagtccaacaagctataagttagc 27531851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 51924096 - 51924048
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  51924096 cattttatcaaaacaagcttataagctagtccaacaagctataaactag 51924048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 55610733 - 55610685
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctag 78  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  55610733 cattttatcaaaacaagcttataagctagtacaacaagctataagctag 55610685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1771869 - 1771916
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1771869 cattttatcaaagcaagcttataagctagtccaacaagctataagcta 1771916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 19870025 - 19869978
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  19870025 tatcaaaacaagcttataagctagttcaataagctataagctagctta 19869978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 19871007 - 19871054
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19871007 tatcaaaacaaggttataagctagtccagcaagctataagctagctta 19871054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 38005615 - 38005568
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  38005615 cattctatcaaaacaaacttataaactagtccaacaagctataagcta 38005568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 202355 - 202309
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  202355 tatcaaagcaagcttataagctaatccaacaagctataagctagctt 202309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 31997903 - 31997866
Alignment:
Q  29 acattctatcaaaacaagcttataagctagtccaacaa 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31997903 acattctatcaaaacaagcttataagctagtccaacaa 31997866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 7113559 - 7113595
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||||||||||||||||||||||||||    
T  7113559 agcttataagctagtccaacaagctataagctagctt 7113595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 20986344 - 20986292
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  20986344 cattttatcaaaacaagtttataagttagtccaacaagctataagttagctta 20986292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 55496077 - 55496113
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagcta 77  Q
    |||||||||||||||||||||||||||||||||||||    
T  55496077 aacaagcttataagctagtccaacaagctataagcta 55496113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 2390299 - 2390350
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||| ||||||||| |||||||| |||||||| |||||||||||||||||    
T  2390299 cattctttcaaaacaaacttataagttagtccaagaagctataagctagctt 2390350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 26923568 - 26923619
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||||||||||||| |||||||||||||||  |||||| |||||||||||||    
T  26923568 cattctatcaaaactagcttataagctagtttaacaagttataagctagctt 26923619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 30653568 - 30653525
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  30653568 cattttatcaaaacaagcttataagctaatccaacaagctataa 30653525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 31624432 - 31624479
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  31624432 tatcaaaacaagcttataagctagtctaacaaactataagctcgctta 31624479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 49646090 - 49646043
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  49646090 tatcaaaacaagcttataagctaatccaacaggctataagctaactta 49646043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 4946711 - 4946757
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaa 149  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||    
T  4946711 cctcatttgcttgcctcctaataaactcgatatgagaatttgttaaa 4946757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 24152731 - 24152694
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  24152731 agcttataaactagtccaacaagctataagctagctta 24152694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 51941162 - 51941121
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||| |||||||| |||||||||||||||||||||||||||    
T  51941162 aacaaacttataagttagtccaacaagctataagctagctta 51941121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 6238243 - 6238207
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6238243 agcttataagctaatccaacaagctataagctagctt 6238207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 19801907 - 19801943
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  19801907 agcttataagctaatccaacaagctataagctagctt 19801943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 30653331 - 30653367
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagcta 77  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30653331 aacaagcttataagctagtccaacaagccataagcta 30653367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 37114478 - 37114514
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37114478 agcttataagctaatccaacaagctataagctagctt 37114514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 39840239 - 39840275
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39840239 agcttataagctaatccaacaagctataagctagctt 39840275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 45561360 - 45561396
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  45561360 agcttataagctaatccaacaagctataagctagctt 45561396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 45618131 - 45618079
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||| ||||||| |||||||||||||| ||||| | |||||||||||||    
T  45618131 cattctattaaaacaaacttataagctagtctaacaaaccataagctagctta 45618079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 53284062 - 53284026
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  53284062 agcttataagctaatccaacaagctataagctagctt 53284026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 53431689 - 53431653
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagcta 77  Q
    ||||| |||||||||||||||||||||||||||||||    
T  53431689 aacaaacttataagctagtccaacaagctataagcta 53431653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 28459682 - 28459639
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataa 73  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||    
T  28459682 cattttatcaaaacaagcttataagatagtccaacaaactataa 28459639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 43374650 - 43374616
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagc 79  Q
    ||||||||||||| |||||||||||||||||||||    
T  43374650 agcttataagctaatccaacaagctataagctagc 43374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 49335237 - 49335271
Alignment:
Q  47 cttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||| |||||||||||||||||||||||    
T  49335237 cttataagctaatccaacaagctataagctagctt 49335271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 55001788 - 55001821
Alignment:
Q  45 agcttataagctagtccaacaagctataagctag 78  Q
    ||||||||||||| ||||||||||||||||||||    
T  55001788 agcttataagctaatccaacaagctataagctag 55001821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 19800981 - 19800949
Alignment:
Q  45 agcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||| |||||||||||||||||||    
T  19800981 agcttataagctaatccaacaagctataagcta 19800949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 33984143 - 33984107
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| | |||||||||||||||||||||    
T  33984143 agcttataagctaattcaacaagctataagctagctt 33984107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 47633888 - 47633920
Alignment:
Q  45 agcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||| |||||||||||||||||||    
T  47633888 agcttataagctaatccaacaagctataagcta 47633920  T

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Target: scaffold0445 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 14042 - 14204
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    |||||||| ||||||||||||||||||| | |||||||||| |||| ||   ||||||||| |    |||| ||||||||||||| ||||||||||||||    
T  14042 cctcattttcttgcctcctaataaactcgacatgagagtttgttaagtaatcattacagaaatttaaactattatccataatggatccaaactcggtgac 14141  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||||||||| |||| |||||||||| |||| || ||||| || ||| |||||||    
T  14142 atctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaacatt 14204  T

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Target: scaffold0071 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 265
Target Start/End: Complemental strand, 52722 - 52562
Alignment:
Q  105 tcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgacat 204  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| |   ||| || || ||| || || | ||||||||||| ||||| ||||||  ||    
T  52722 tcatttgcttgcctcctaataaactcgacatgagagtttgttaaaaatatattgcaaaactggatagtattctccataatggatccaaattcggtgttat 52623  T
Q  205 ctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||| ||  |||||| ||||| |||||||||| |||||||||| || |||||| |||||||    
T  52622 ctcctctggctttgtgaaaataatcagctactgttttcgaatctacctcaaaatcaacatt 52562  T

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Target: scaffold0007 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 234732 - 234894
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||| | |||||||||||||||||| | |||||||||| |||| || | |||| | || |   ||||||| |||||||| || ||||| |||||  |    
T  234732 cctcattcgtttgcctcctaataaactcgacatgagagtttgttaagtaagtattagaaaagtaaatactactgtccataatagagccaaattcggtagc 234831  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||||||||| |||| |||||||||| |||| || |||||||||||| |||||||    
T  234832 atctccgcaacctttgttcaaataatcagctactcttttagagtcaacttcaaaatcaacatt 234894  T

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Target: scaffold0115 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 4219 - 4168
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  4219 cattttattaaaacaagcttataagctagtccaacaagctataagctagctt 4168  T

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Target: scaffold0115; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 11959 - 11908
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagctagctt 81  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  11959 cattttattaaaacaagcttataagctagtccaacaagctataagctagctt 11908  T

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Target: scaffold0388 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 14473 - 14634
Alignment:
Q  103 cctcatttgcttgcctcctaataaactcaatatgagagtttattaaataggaattacagaattgggtactactatccataatggaaccaaactcggtgac 202  Q
    ||||||||||||||||||||||||| || | |||||||||| |||||||    |||||||| ||| | ||| |||| || ||  ||||||| |||| |||    
T  14473 cctcatttgcttgcctcctaataaattcgacatgagagtttgttaaataattgttacagaaatggatgctattatcaatgataaaaccaaattcgg-gac 14571  T
Q  203 atctcccctacctttgttaaaattatcagctactattttcgaatcaacttcaaaaccaacatt 265  Q
    |||||| | ||||||||| |||| || ||| |||||||| || ||||| || ||| |||||||    
T  14572 atctccacgacctttgttgaaataattagcaactatttttgagtcaacctcgaaatcaacatt 14634  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 94438 - 94485
Alignment:
Q  35 tatcaaaacaagcttataagctagtccaacaagctataagctagctta 82  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  94438 tatcaaaacaagtttataagctagttcaacaagctataagctagctta 94485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 76314 - 76267
Alignment:
Q  30 cattctatcaaaacaagcttataagctagtccaacaagctataagcta 77  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  76314 cattctatcaaaacaaatttataagctagtccaacaaactataagcta 76267  T

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Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 57893 - 57929
Alignment:
Q  45 agcttataagctagtccaacaagctataagctagctt 81  Q
    ||||||||||||| |||||||||||||||||||||||    
T  57893 agcttataagctaatccaacaagctataagctagctt 57929  T

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Target: scaffold1391 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 1535 - 1576
Alignment:
Q  41 aacaagcttataagctagtccaacaagctataagctagctta 82  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    
T  1535 aacaagcttataagctagttcaacaaactataagatagctta 1576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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