View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0764_low_1 (Length: 692)

Name: NF0764_low_1
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0764_low_1
NF0764_low_1
[»] chr8 (1 HSPs)
chr8 (1-680)||(34221790-34222469)


Alignment Details
Target: chr8 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Complemental strand, 34222469 - 34221790
Alignment:
Q  1 gaccggaatgcatggacccaagaaatggatgttcgttcatcgaacttctagtagcaactagcaacaactactttgtctaatcttccccaccaatccgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34222469 gaccggaatgcatggacccaagaaatggatgttcgttcatcgaacttctagtagcaactagcaacaactactttgtctaatcttccccaccaatccgtaa 34222370  T
Q  101 tttgtgtcgctacattattttcatgtctctcttttgccgtcaatcatgtcgttgttgatgtcagagcatgaaccatgaattaattcatgattggctagtg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34222369 tttgtgtcgctacattattttcatgcctctcttttgccgtcaatcatgtcgttgttgatgtcagagcatgaaccatgaattaattcatgattggctagtg 34222270  T
Q  201 tgctatactctttgtgattttgtgtatacaaaaattaattacacgttactattattgtttttctcaagtaattattgttatcattatagaaaggnnnnnn 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  34222269 tgctatactctttgtgattttgtgtgtacaaaaattaattacacgttactattattgtttttctcaagtaattattgttatcattatagaaaggaaaaaa 34222170  T
Q  301 nnnncatgatccatttaagcatcttgatgcttagaacttgtgttgtttattgggtctaatattacaatagataatattgttgtttgtaagagaagagtgt 400  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34222169 aaaacatgatccatttaagcatcttgatgcttagaacttgtgttgtttattgggtctactattacaatagataatattgttgtttgtaagagaagagtgt 34222070  T
Q  401 attgaattttccatgttgcatcaaaacgattcttatgaacagtttcttacataagttaaatgcatccaaactatttatgattagtgactaatttgtttgg 500  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34222069 attgaattttccatgttgcatcaaaataattcctatgaacagtttcttacataagttaaatgcatccaaactatttatgattagtgactaatttgtttgt 34221970  T
Q  501 taatgggacaagttgttgcagatcatgggagtggggtctcaagggaccaacatataggaaaagttaagaggatcaaaggtttcgaaggggacatgattgc 600  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  34221969 taatgggacaagttgttgctgatcatgggagtggggtcttaagggaccaacatataggaaaagttaagaggatcaaaggttgggaaggggacatgattgc 34221870  T
Q  601 atggataaaagctagaattcgtgtcctcattttggacatagaaaactatgtgtacttggttgaattgaatctccaatatt 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34221869 atggataaaagctagaattcgtgtcctcattttggacatagaaaactatgtgtacttggttgaattgaatctccaatatt 34221790  T

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