View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_low_10 (Length: 322)
Name: NF0764_low_10
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 32 - 315
Target Start/End: Complemental strand, 25866502 - 25866216
Alignment:
| Q |
32 |
aaatgaaatattatcttctttcgatgaccgactcaggctctatgctaccaagcagttaacaaaggtaagctatatcttgatggaggcatttcttcatttg |
131 |
Q |
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| T |
25866502 |
aaatgaaatattatcttctttcgatgaccgactcaggctctatgctaccaagcagttaacaaaggtaagctatatcttgatagaggcatttcttcatttg |
25866403 |
T |
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| Q |
132 |
gaatgtttcatatgagtaaaagtttaacatatgcgtctatagaaattatgtttatacaagaattatgtatttcacaaactgttgaaactcttca-----t |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
25866402 |
gaatgtttcatatgagtaaaagtttaacatatgcgtctatagaaattatgtttatacaagaattatgtatttcacaaactgatgaaactcttcatcaatt |
25866303 |
T |
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| Q |
227 |
atgatagtattagtatctgaattgtcaaggtagttgttaaaagtgttccatattagtttttatattttccaatattgtagttcatctca |
315 |
Q |
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| T |
25866302 |
atgatagtattagtatctgaattgacaaagtagttgttaaaactgttccatattag--tttatattttccaatattgtagtttatctca |
25866216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 30218149 - 30218080
Alignment:
| Q |
33 |
aatgaaatattatcttctttcgatgaccgactcaggctctatgctaccaagcagttaacaaaggtaagct |
102 |
Q |
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||||| ||||| ||||| || |||||||||||||||| |||||| ||||| ||||| |||||||| |||| |
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| T |
30218149 |
aatgagatattgtcttcctttgatgaccgactcaggcactatgccaccaaccagttgacaaaggtgagct |
30218080 |
T |
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