View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_low_12 (Length: 321)
Name: NF0764_low_12
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31952109 - 31951884
Alignment:
| Q |
1 |
cacaatttaatgtgatttccttttcaaaattcaaagttgttccgaaaggcatccaactatccgtcattttccaacaacactattgtttcaaccttcaaat |
100 |
Q |
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| T |
31952109 |
cacaatttaatttgatttccttttcaaaattcaaagttgttccaaaaggcatccaactatccgtcattttccaacaacactattgtttcaaccttcaaat |
31952010 |
T |
|
| Q |
101 |
tggtaaatgtataaaacagtccacaaaaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaa |
200 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
31952009 |
tggtaaatgtataaaacagttcacaaatatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaaatct-aagatcctgttaa |
31951911 |
T |
|
| Q |
201 |
atgtgtaaaataattagtccacaaaat |
227 |
Q |
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| T |
31951910 |
atgtgtaaaataaatagtccacaaaat |
31951884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 55320899 - 55320785
Alignment:
| Q |
112 |
taaaacagtccacaaaaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaaatgtgtaaaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
55320899 |
taaaacagtccacaaaaatattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatct-aagatcctgttaaatgtgtaaaat |
55320801 |
T |
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| Q |
212 |
aattagtccacaaaat |
227 |
Q |
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| T |
55320800 |
aaatagtccacaaaat |
55320785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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