View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0764_low_13 (Length: 317)

Name: NF0764_low_13
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0764_low_13
NF0764_low_13
[»] chr1 (8 HSPs)
chr1 (95-248)||(47319641-47319807)
chr1 (136-225)||(47316154-47316243)
chr1 (136-241)||(47314399-47314504)
chr1 (136-245)||(47319857-47319966)
chr1 (98-141)||(47316251-47316294)
chr1 (147-245)||(47316392-47316490)
chr1 (98-143)||(47307091-47307136)
chr1 (98-143)||(47311166-47311211)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 47319807 - 47319641
Alignment:
Q  95 atagaagtgggatttcatctcctggtggcaagaagatgttgaatcttga-------------tgttctttcaacaactccataattccttctttgatgac 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  47319807 atagaagtgggatttcatctcctggtggcaagaagatgttgaatcttgaaattaaatcttgatgttctttcaacaactccataattccttctttgatgac 47319708  T
Q  182 tcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttccttc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319707 tcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttccttc 47319641  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 47316243 - 47316154
Alignment:
Q  136 aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttca 225  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||    
T  47316243 aatcttgatgttctttcaacaactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttca 47316154  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 47314504 - 47314399
Alignment:
Q  136 aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc 235  Q
    |||||||||| ||||| ||||||||||||| |||||||||||  |||||| |||||||||||||||| |  ||||||||||||||||||||||| || ||    
T  47314504 aatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggcaccaaaatcatgtaggagtttcatgaactcgtc 47314405  T
Q  236 aaactt 241  Q
    ||||||    
T  47314404 aaactt 47314399  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 47319966 - 47319857
Alignment:
Q  136 aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc 235  Q
    |||||| ||| ||||| ||||||||||| | |||||||||||  |||||  ||||||||||||||||  || |||||  || |||||||| ||| |||||    
T  47319966 aatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatc 47319867  T
Q  236 aaacttttcc 245  Q
    | ||||||||    
T  47319866 atacttttcc 47319857  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 47316294 - 47316251
Alignment:
Q  98 gaagtgggatttcatctcctggtggcaagaagatgttgaatctt 141  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  47316294 gaagtgagatttcatgtcctggtggcaagaagatgttgaatctt 47316251  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 47316490 - 47316392
Alignment:
Q  147 tctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttcc 245  Q
    ||||| ||||||||||| |||||||||||||  ||||||  |||||||||||||||   | |||||  ||||||||||| ||| ||||  |||||||||    
T  47316490 tctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttcc 47316392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 47307136 - 47307091
Alignment:
Q  98 gaagtgggatttcatctcctggtggcaagaagatgttgaatcttga 143  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||    
T  47307136 gaagtgagatttcttgtcctggtggcaagaagatgttgaatcttga 47307091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 47311211 - 47311166
Alignment:
Q  98 gaagtgggatttcatctcctggtggcaagaagatgttgaatcttga 143  Q
    |||||| |||||||| ||||| ||||| ||||||||||||||||||    
T  47311211 gaagtgagatttcatgtcctgatggcatgaagatgttgaatcttga 47311166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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