View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_low_15 (Length: 308)
Name: NF0764_low_15
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11192087 - 11191846
Alignment:
| Q |
1 |
ttgatatctatgtttatgaaagggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagctttgccaaatagaaactca |
100 |
Q |
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| T |
11192087 |
ttgatatctatgtttatgaaagggttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactca |
11191988 |
T |
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| Q |
101 |
ataagaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgcttgtcctagtgttgtgtcttgtgcggatattcttgcacttggtgctaatg |
200 |
Q |
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| T |
11191987 |
ataagaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgcttgtcctagtgttgtgtcttgtgcagatattcttgcacttggtgctaatg |
11191888 |
T |
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| Q |
201 |
tttcctccgttctggtacgtttcacatcctctatatattatt |
242 |
Q |
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| T |
11191887 |
tttcctccgttctggtacgtttcacatcctctatatattatt |
11191846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 11171155 - 11171368
Alignment:
| Q |
4 |
atatctatgtttatgaaagggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagctttgccaaatagaaactcaata |
103 |
Q |
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| T |
11171155 |
atatctatgtttatgaaagggttgtgatgcatcaatcttgttgaataccacttctacgatcacaagtgagcaaacagcttttggaaataacaactcaata |
11171254 |
T |
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| Q |
104 |
agaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgcttgtcctagtgttgtgtcttgtgcggatattcttgcacttggtgctaatgttt |
203 |
Q |
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| T |
11171255 |
agaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctgctgaaattt |
11171354 |
T |
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| Q |
204 |
cctccgttctggta |
217 |
Q |
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| T |
11171355 |
cctctgttctggta |
11171368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 11184898 - 11184823
Alignment:
| Q |
151 |
ttgtcctagtgttgtgtcttgtgcggatattcttgcacttggtgctaatgtttcctccgttctggtacgtttcaca |
226 |
Q |
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| T |
11184898 |
ttgtcctagtgttgtgtcttgtgctgatattcttgcacttggtgctaacatttcctcagttctggtatgttccaca |
11184823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 11145247 - 11145359
Alignment:
| Q |
21 |
agggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt |
120 |
Q |
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| T |
11145247 |
agggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttgt |
11145346 |
T |
|
| Q |
121 |
gaatcaaatcaaa |
133 |
Q |
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| T |
11145347 |
gaatcaaatcaaa |
11145359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 11136948 - 11137060
Alignment:
| Q |
21 |
agggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt |
120 |
Q |
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||||||||||||||||| | || ||||| | ||||||| || ||||||| |||| |||||| ||||||| ||||| || ||||||||||| |||| |
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| T |
11136948 |
agggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgt |
11137047 |
T |
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| Q |
121 |
gaatcaaatcaaa |
133 |
Q |
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| T |
11137048 |
gaatcaaatcaaa |
11137060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 11149226 - 11149293
Alignment:
| Q |
66 |
tgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaa |
133 |
Q |
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||||||| |||| ||||| ||||| ||||||||| |||||||||| ||| ||||||||||||||||| |
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| T |
11149226 |
tgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttgtgaatcaaatcaaa |
11149293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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