View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_low_19 (Length: 268)
Name: NF0764_low_19
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 37182998 - 37182919
Alignment:
| Q |
45 |
aacaatttcacttgaaacaac---aacacaatcctttaacaaagtcactcacctttccaaattcatcatcttccttctat |
121 |
Q |
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| T |
37182998 |
aacaacttcacttgaaacaacaacaacacaatcctttaacaaagtcattcatcttttcaaattcatcatcttccttctat |
37182919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 52094984 - 52095040
Alignment:
| Q |
65 |
caacacaatcctttaacaaagtcactcacctttccaaattcatcatcttccttctat |
121 |
Q |
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| T |
52094984 |
caacacatttctttaacaaactcatttatctttccaaattcatcatcttccctctat |
52095040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 23505959 - 23505898
Alignment:
| Q |
60 |
aacaacaacacaatcctttaacaaagtcactcacctttccaaattcatcatcttccttctat |
121 |
Q |
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|||||||| ||||| ||||| |||| ||| ||| ||| |||||||||||||||||| ||||| |
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| T |
23505959 |
aacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccctctat |
23505898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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