View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_low_2 (Length: 503)
Name: NF0764_low_2
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 104 - 435
Target Start/End: Original strand, 2982911 - 2983242
Alignment:
| Q |
104 |
ctttgtttgttcattctttgataaacttttaaaaagtgactataaatattgatttaaaaggttcaatattgttacttgtataccattttgttctttttat |
203 |
Q |
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| T |
2982911 |
ctttgtttgtttattctctgataaacttttaaaaagtgactacaaatattgattttaaaagttcaatattgttacttgtataccattttgttctttttat |
2983010 |
T |
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| Q |
204 |
cttcttgaaaatgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactg |
303 |
Q |
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| T |
2983011 |
cttcttgaaaatgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgttttaagctagcttgctcaataaaagaaatggaagactg |
2983110 |
T |
|
| Q |
304 |
aaggagatgcatgaagatggctgctctagatattaagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtac |
403 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
2983111 |
aaggagatgcgtgaagatggctgctctagatattaagagttttgactttctgaatgattataagttaactttcttttcttgttattgtgttattttgtac |
2983210 |
T |
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| Q |
404 |
ttgctcataaacaagagactgattgatcaagg |
435 |
Q |
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| T |
2983211 |
ttgctcataaacatgagactgattgatcaagg |
2983242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 232 - 435
Target Start/End: Complemental strand, 2706448 - 2706245
Alignment:
| Q |
232 |
tatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgcatgaagatggctgctcta |
331 |
Q |
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|||||| ||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| ||||| | |||| ||||||||||||||||| |
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| T |
2706448 |
tatgcaatatcatactcatttaatgtgtgcttttgttaatctagcttgctcaataaaagaaatggaggactggaaaagatttgtgaagatggctgctcta |
2706349 |
T |
|
| Q |
332 |
gatattaagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactgattgatc |
431 |
Q |
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|||||| | |||| ||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2706348 |
gatattcaagttttttattttctgcatgattattagttaattttcttttcttgtttttgtgttattttgtacttgctcataaacaagcgacctattgatc |
2706249 |
T |
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| Q |
432 |
aagg |
435 |
Q |
| |
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|||| |
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| T |
2706248 |
aagg |
2706245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 325 - 435
Target Start/End: Complemental strand, 2708839 - 2708729
Alignment:
| Q |
325 |
tgctctagatatt-aagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagact |
423 |
Q |
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||||||||||||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2708839 |
tgctctagatattcaagattttt-attttctgaatgattattagttaattttcttttcttgttattgtgttattttatacttgctcataaacaagagact |
2708741 |
T |
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| Q |
424 |
gattgatcaagg |
435 |
Q |
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|||||||||||| |
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| T |
2708740 |
gattgatcaagg |
2708729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 2992074 - 2992200
Alignment:
| Q |
197 |
tttttatcttcttgaaaatgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatgg |
296 |
Q |
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||||||| |||| ||| ||||||||| ||| ||| || |||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||| |||| |
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| T |
2992074 |
tttttatactcttaaaactgatctattccaatattcatacactatcatactgattaaatgtgttcttgtgttaagctagctggctcaataaaagacatgg |
2992173 |
T |
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| Q |
297 |
aagactgaaggagatgcatgaagatgg |
323 |
Q |
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| T |
2992174 |
aagactggaggagatgcgtgaagatgg |
2992200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 43953563 - 43953470
Alignment:
| Q |
7 |
gatagttcccaagacactgaaaagagtttttaaaccgtttgccaatgaaatcgtcgccattgattgttggagatagagagttttgcaacagcta |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43953563 |
gatagttcccaaaacactgaaaagagtttttaaaccgtttgccaatgaaatcgtcgccattgattgttggagatagagagttttgcaatagcta |
43953470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 241 - 378
Target Start/End: Complemental strand, 10753043 - 10752905
Alignment:
| Q |
241 |
tcatactgatttaatgtgtgcttgtgttaagctg-gcttgctcaataaaa-gaaatggaagactgaaggagatgcatgaagatggctgctctagatatta |
338 |
Q |
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||||||||| | ||||||||||||| | ||||| |||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
10753043 |
tcatactgaataaatgtgtgcttgtttgaagctaagcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatattt |
10752944 |
T |
|
| Q |
339 |
agagttttgattttgtgaatgattattagttaaatttctt |
378 |
Q |
| |
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| ||||||| |||| ||||||||||||||| || |||||| |
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| T |
10752943 |
a-agttttggttttctgaatgattattagtaaattttctt |
10752905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 18358454 - 18358580
Alignment:
| Q |
197 |
tttttatcttcttgaaaatgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatgg |
296 |
Q |
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||||||| |||| ||| ||||||||| ||| ||| || |||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||||||| |||| |
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| T |
18358454 |
tttttatactcttaaaactgatctattccaatattcatacactatcatactgattaaatatgttcttgtgttaagctagctggctcaataaaagacatgg |
18358553 |
T |
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| Q |
297 |
aagactgaaggagatgcatgaagatgg |
323 |
Q |
| |
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||||||| ||||||||| ||||||||| |
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| T |
18358554 |
aagactggaggagatgcgtgaagatgg |
18358580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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