View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0764_low_20 (Length: 256)
Name: NF0764_low_20
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 14499947 - 14499861
Alignment:
| Q |
142 |
gagctattacgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14499947 |
gagctattacgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatt |
14499861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 14500073 - 14499994
Alignment:
| Q |
16 |
atactccatattcaaaattatcacaacacgtataattgcttacaataatcagggtgtgtgtcttgtctatcatgaaaggg |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14500073 |
atactccatattcaaaattatcacaacacgtataattgcttacaataatcagggtgcgtgtcttgtctatcatgaaaggg |
14499994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 14350590 - 14350532
Alignment:
| Q |
166 |
aattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaa |
224 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
14350590 |
aattaataaaaattatatttggaagaatgaggttgttcacactataaagtgatcatgaa |
14350532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 15040146 - 15040218
Alignment:
| Q |
150 |
acgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatg |
222 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| |||| ||| | |||| |||||||||||||||||| |
|
|
| T |
15040146 |
acgaccatcaaaagacaattaataataattataatttaaagaatgaggctttttccactataaagtgatcatg |
15040218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 14425578 - 14425522
Alignment:
| Q |
166 |
aattaataataattataattggaagattgaagtttttcacactataaagtgatcatg |
222 |
Q |
| |
|
||||||||||||||||| |||||||| ||| ||| |||| |||||||||||||||| |
|
|
| T |
14425578 |
aattaataataattatatttggaagaatgaggttgttcatgctataaagtgatcatg |
14425522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 15039999 - 15040079
Alignment:
| Q |
13 |
attatactccatattcaaaattatcacaacacgtataattgcttacaataatcagggtgtgtgtcttgtctatcatgaaag |
93 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||| || |||||| ||| | | |||||||||||||||||| |
|
|
| T |
15039999 |
attatactcaatatttaaaattatcacaacacatataattgattgtaataattgaggtttatatcttgtctatcatgaaag |
15040079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3632 times since January 2019
Visitors: 4816