View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0764_low_30 (Length: 201)

Name: NF0764_low_30
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0764_low_30
NF0764_low_30
[»] chr5 (6 HSPs)
chr5 (1-110)||(29568361-29568470)
chr5 (7-110)||(1758153-1758256)
chr5 (1-110)||(29168254-29168363)
chr5 (1-110)||(29425295-29425404)
chr5 (1-94)||(29569708-29569801)
chr5 (1-94)||(27918649-27918742)
[»] chr4 (4 HSPs)
chr4 (1-115)||(27521322-27521436)
chr4 (1-110)||(27461999-27462108)
chr4 (2-110)||(18986100-18986208)
chr4 (1-110)||(27482138-27482247)
[»] chr3 (1 HSPs)
chr3 (1-94)||(25518483-25518576)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29568470 - 29568361
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29568470 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccgc 29568371  T
Q  101 tgtgtctctg 110  Q
    ||||||||||    
T  29568370 tgtgtctctg 29568361  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 1758153 - 1758256
Alignment:
Q  7 caagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtc 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  1758153 caagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtc 1758252  T
Q  107 tctg 110  Q
    ||||    
T  1758253 tctg 1758256  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29168254 - 29168363
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccac 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |    
T  29168254 atcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaatgctcttagctgc 29168353  T
Q  101 tgtgtctctg 110  Q
    ||||||||||    
T  29168354 tgtgtctctg 29168363  T

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Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29425295 - 29425404
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccac 100  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  29425295 atcatccaagaagcattcttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgc 29425394  T
Q  101 tgtgtctctg 110  Q
    ||||||||||    
T  29425395 tgtgtctctg 29425404  T

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Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29569801 - 29569708
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctctt 94  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29569801 atcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgctctt 29569708  T

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Target: chr5; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27918649 - 27918742
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctctt 94  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  27918649 atcatccaagaagcattcttctggcgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctctt 27918742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 27521436 - 27521322
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |    
T  27521436 atcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgc 27521337  T
Q  101 tgtgtctctgctcct 115  Q
    |||||||||| ||||    
T  27521336 tgtgtctctgatcct 27521322  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27461999 - 27462108
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |    
T  27461999 atcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgctcttagccgc 27462098  T
Q  101 tgtgtctctg 110  Q
    ||||||||||    
T  27462099 tgtgtctctg 27462108  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 18986100 - 18986208
Alignment:
Q  2 tcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccact 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||    
T  18986100 tcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtgggaatactcttagccgct 18986199  T
Q  102 gtgtctctg 110  Q
    |||||||||    
T  18986200 gtgtctctg 18986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27482138 - 27482247
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |    
T  27482138 atcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgctcttagccgc 27482237  T
Q  101 tgtgtctctg 110  Q
    ||||||||||    
T  27482238 tgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25518483 - 25518576
Alignment:
Q  1 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctctt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  25518483 atcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaatgctctt 25518576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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