View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0764_low_4 (Length: 401)
Name: NF0764_low_4
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0764_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 35318930 - 35318716
Alignment:
| Q |
16 |
atgcatttacaattggaaaaatgtttgctcatcaaacttaattcaatccaaaaacttcggttttacatataacatcatatataatacatgtggacttaat |
115 |
Q |
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| T |
35318930 |
atgcatttacaattggaaaaatgtttgatcatcaaacttaattcaatccaagaaattaggttttaaatataaaatcatatataatacatgtggtcttaat |
35318831 |
T |
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| Q |
116 |
cgcgattgtgttctcgtcacatacacaaatcgaacaatagttgatgcaacctcaaacggagttgtattaatgtacacacaaatttaaaattattttacct |
215 |
Q |
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|||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35318830 |
cgcgattgtgttatcgtcacataaacacatcgaaaaatagttgatgcaacctcaaacggagttgtattaatgtacacacaaatttaaaattattttacct |
35318731 |
T |
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| Q |
216 |
atagtttagattgtt |
230 |
Q |
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||||||||||||||| |
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| T |
35318730 |
atagtttagattgtt |
35318716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 257 - 395
Target Start/End: Complemental strand, 35318697 - 35318559
Alignment:
| Q |
257 |
ctacatttcatgcaagggaaaaaaggtttgggatttggtttaactaaaaaattaagaaaacgtgaataaaagcaaagagaagaaagtgagtggtttagtt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35318697 |
ctacatttcatgcaagggaaaaaaggtttgggatttggtttaactaaaaaattaagaaaacgtgaataaaagcaaagagaagaaagtaagtggtttagtt |
35318598 |
T |
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| Q |
357 |
atcctgatttggtaaatgaaagggagttagacataaatg |
395 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
35318597 |
atcctcatttggtaaatgaaagggagttagacataaatg |
35318559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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