View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0764_low_5 (Length: 371)

Name: NF0764_low_5
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0764_low_5
NF0764_low_5
[»] chr7 (28 HSPs)
chr7 (253-371)||(36686054-36686172)
chr7 (253-371)||(30821060-30821178)
chr7 (253-371)||(38480167-38480285)
chr7 (130-188)||(11085112-11085170)
chr7 (130-188)||(30820937-30820995)
chr7 (131-188)||(15213812-15213869)
chr7 (133-188)||(36685934-36685989)
chr7 (130-188)||(11092850-11092908)
chr7 (143-188)||(9320423-9320468)
chr7 (289-370)||(14270266-14270349)
chr7 (289-370)||(45847862-45847945)
chr7 (130-188)||(15439398-15439457)
chr7 (322-371)||(59314-59364)
chr7 (322-371)||(8852087-8852137)
chr7 (322-371)||(11066548-11066598)
chr7 (322-371)||(12371358-12371408)
chr7 (289-370)||(8468243-8468326)
chr7 (332-371)||(12128097-12128136)
chr7 (130-188)||(37727607-37727666)
chr7 (322-371)||(32434511-32434561)
chr7 (322-370)||(9389961-9390010)
chr7 (334-371)||(46386997-46387034)
chr7 (334-371)||(48811981-48812018)
chr7 (332-371)||(14183562-14183601)
chr7 (322-371)||(11392048-11392098)
chr7 (322-371)||(13150467-13150517)
chr7 (332-370)||(17232428-17232466)
chr7 (326-371)||(18075455-18075500)
[»] chr3 (31 HSPs)
chr3 (253-371)||(31415334-31415452)
chr3 (253-371)||(31224758-31224876)
chr3 (253-371)||(15447801-15447919)
chr3 (130-188)||(15447681-15447739)
chr3 (130-188)||(11913034-11913092)
chr3 (130-188)||(31224635-31224693)
chr3 (322-371)||(17693208-17693258)
chr3 (147-188)||(6808250-6808291)
chr3 (318-371)||(17519823-17519877)
chr3 (318-371)||(17534685-17534739)
chr3 (322-371)||(22307505-22307555)
chr3 (322-371)||(30175436-30175486)
chr3 (322-371)||(40807076-40807126)
chr3 (322-371)||(41173241-41173291)
chr3 (322-370)||(1465675-1465724)
chr3 (130-188)||(1988912-1988971)
chr3 (326-371)||(5214998-5215044)
chr3 (322-371)||(17538187-17538237)
chr3 (332-370)||(20630373-20630411)
chr3 (326-371)||(13516474-13516519)
chr3 (334-371)||(17519784-17519821)
chr3 (334-371)||(17534646-17534683)
chr3 (334-371)||(40811891-40811928)
chr3 (334-371)||(52466429-52466466)
chr3 (322-371)||(5206524-5206575)
chr3 (332-371)||(12269376-12269415)
chr3 (332-371)||(15932387-15932426)
chr3 (322-371)||(5841861-5841911)
chr3 (332-370)||(23413560-23413598)
chr3 (332-370)||(45796939-45796977)
chr3 (160-188)||(49969963-49969991)
[»] chr5 (21 HSPs)
chr5 (253-371)||(17875144-17875262)
chr5 (253-371)||(21555183-21555302)
chr5 (257-371)||(21557853-21557967)
chr5 (253-371)||(31455007-31455125)
chr5 (253-371)||(31455620-31455738)
chr5 (253-371)||(12122325-12122443)
chr5 (253-367)||(30615690-30615804)
chr5 (130-188)||(12122202-12122260)
chr5 (132-188)||(31455193-31455249)
chr5 (132-188)||(31455806-31455862)
chr5 (130-188)||(21555060-21555118)
chr5 (130-188)||(21557726-21557784)
chr5 (130-188)||(30615868-30615926)
chr5 (130-188)||(36460283-36460341)
chr5 (143-188)||(24212481-24212526)
chr5 (143-188)||(35852736-35852781)
chr5 (322-371)||(23200434-23200483)
chr5 (130-188)||(5889092-5889151)
chr5 (332-370)||(29915349-29915387)
chr5 (318-348)||(12122445-12122475)
chr5 (333-371)||(25743706-25743744)
[»] chr8 (21 HSPs)
chr8 (253-371)||(21580010-21580129)
chr8 (253-371)||(29763672-29763789)
chr8 (253-371)||(41680926-41681043)
chr8 (130-188)||(21579887-21579945)
chr8 (130-188)||(29763549-29763607)
chr8 (130-188)||(42560208-42560266)
chr8 (253-364)||(22965686-22965797)
chr8 (322-371)||(6102633-6102683)
chr8 (323-370)||(39833792-39833840)
chr8 (333-371)||(2418971-2419009)
chr8 (332-370)||(20982901-20982939)
chr8 (332-370)||(27472572-27472610)
chr8 (332-370)||(38550267-38550305)
chr8 (322-371)||(39936932-39936982)
chr8 (332-371)||(24713301-24713340)
chr8 (130-188)||(3273252-3273310)
chr8 (130-188)||(18760648-18760706)
chr8 (333-367)||(35026960-35026994)
chr8 (322-371)||(39695406-39695455)
chr8 (151-188)||(39833986-39834023)
chr8 (133-165)||(41680819-41680851)
[»] scaffold0071 (2 HSPs)
scaffold0071 (253-371)||(14270-14388)
scaffold0071 (130-188)||(14453-14511)
[»] chr2 (21 HSPs)
chr2 (253-371)||(22500919-22501037)
chr2 (253-371)||(22508853-22508971)
chr2 (253-371)||(24865574-24865692)
chr2 (253-347)||(7672356-7672450)
chr2 (131-188)||(7672240-7672297)
chr2 (131-188)||(24865452-24865509)
chr2 (130-188)||(2524410-2524468)
chr2 (142-188)||(22501102-22501148)
chr2 (142-188)||(22509036-22509082)
chr2 (322-371)||(5032246-5032296)
chr2 (322-371)||(6576293-6576343)
chr2 (318-371)||(9975005-9975059)
chr2 (322-371)||(24436124-24436174)
chr2 (322-371)||(24781762-24781812)
chr2 (322-371)||(22689760-22689810)
chr2 (322-371)||(22694356-22694406)
chr2 (333-371)||(24883542-24883580)
chr2 (334-371)||(9975061-9975098)
chr2 (334-371)||(21367926-21367963)
chr2 (322-371)||(25045130-25045179)
chr2 (132-188)||(6576487-6576543)
[»] scaffold1351 (2 HSPs)
scaffold1351 (253-371)||(1496-1614)
scaffold1351 (131-188)||(1679-1736)
[»] scaffold0395 (2 HSPs)
scaffold0395 (257-371)||(10825-10939)
scaffold0395 (143-188)||(11008-11053)
[»] chr6 (18 HSPs)
chr6 (253-371)||(20734251-20734368)
chr6 (130-188)||(20734128-20734186)
chr6 (130-188)||(27851315-27851373)
chr6 (133-188)||(34296953-34297008)
chr6 (145-188)||(22421080-22421123)
chr6 (143-188)||(2201232-2201277)
chr6 (130-188)||(25956537-25956596)
chr6 (322-371)||(17318992-17319042)
chr6 (322-371)||(18708580-18708630)
chr6 (332-371)||(31733794-31733833)
chr6 (322-371)||(23151188-23151238)
chr6 (326-371)||(31733841-31733887)
chr6 (322-371)||(19829827-19829876)
chr6 (322-367)||(27573027-27573072)
chr6 (297-370)||(27850984-27851059)
chr6 (332-371)||(27323551-27323590)
chr6 (322-371)||(28708554-28708604)
chr6 (253-306)||(25956661-25956714)
[»] scaffold0737 (5 HSPs)
scaffold0737 (253-371)||(6482-6599)
scaffold0737 (130-188)||(6359-6417)
scaffold0737 (332-371)||(5593-5632)
scaffold0737 (318-371)||(5634-5688)
scaffold0737 (332-371)||(5758-5797)
[»] chr1 (22 HSPs)
chr1 (253-371)||(51274392-51274510)
chr1 (132-188)||(12328538-12328594)
chr1 (143-188)||(8885510-8885555)
chr1 (289-370)||(41305818-41305901)
chr1 (322-371)||(48300943-48300993)
chr1 (322-370)||(35981952-35982001)
chr1 (151-188)||(51274290-51274327)
chr1 (130-188)||(43697519-43697578)
chr1 (333-371)||(20634508-20634546)
chr1 (333-371)||(41227628-41227666)
chr1 (332-370)||(46382831-46382869)
chr1 (334-371)||(11809420-11809457)
chr1 (133-165)||(51326966-51326998)
chr1 (130-188)||(28194365-28194424)
chr1 (322-371)||(20587810-20587860)
chr1 (322-371)||(20592348-20592398)
chr1 (332-370)||(43542917-43542955)
chr1 (322-371)||(1642566-1642615)
chr1 (322-371)||(8276868-8276917)
chr1 (334-371)||(23073077-23073114)
chr1 (322-371)||(24726451-24726500)
chr1 (253-306)||(28194489-28194542)
[»] chr4 (17 HSPs)
chr4 (253-363)||(33186040-33186150)
chr4 (130-188)||(33186215-33186273)
chr4 (318-371)||(10357358-10357412)
chr4 (289-370)||(362062-362145)
chr4 (322-371)||(10357306-10357356)
chr4 (322-371)||(19609404-19609454)
chr4 (143-188)||(15880810-15880855)
chr4 (130-188)||(13844685-13844744)
chr4 (332-371)||(15042060-15042099)
chr4 (332-371)||(15112325-15112364)
chr4 (332-370)||(15869022-15869060)
chr4 (332-370)||(19857389-19857427)
chr4 (322-370)||(15099156-15099205)
chr4 (332-370)||(32851153-32851191)
chr4 (322-371)||(35812359-35812409)
chr4 (334-371)||(27995888-27995925)
chr4 (322-371)||(32467169-32467218)
[»] scaffold0815 (1 HSPs)
scaffold0815 (253-335)||(450-532)
[»] scaffold0599 (2 HSPs)
scaffold0599 (130-188)||(4728-4786)
scaffold0599 (130-188)||(310-368)
[»] scaffold0632 (1 HSPs)
scaffold0632 (326-371)||(299-344)
[»] scaffold0810 (1 HSPs)
scaffold0810 (130-188)||(3077-3136)
[»] scaffold0371 (2 HSPs)
scaffold0371 (321-371)||(2996-3047)
scaffold0371 (130-188)||(3176-3234)
[»] scaffold0116 (3 HSPs)
scaffold0116 (130-188)||(43700-43759)
scaffold0116 (130-188)||(47620-47679)
scaffold0116 (253-306)||(43824-43877)
[»] scaffold0509 (1 HSPs)
scaffold0509 (322-371)||(9680-9730)
[»] scaffold0384 (1 HSPs)
scaffold0384 (322-371)||(8308-8358)
[»] scaffold0375 (1 HSPs)
scaffold0375 (322-371)||(9224-9274)
[»] scaffold0026 (1 HSPs)
scaffold0026 (322-371)||(145867-145917)
[»] scaffold1137 (1 HSPs)
scaffold1137 (322-370)||(2556-2605)
[»] scaffold0639 (1 HSPs)
scaffold0639 (332-371)||(7587-7626)
[»] scaffold0507 (1 HSPs)
scaffold0507 (332-371)||(2769-2808)
[»] scaffold1792 (1 HSPs)
scaffold1792 (332-370)||(202-240)
[»] scaffold0230 (1 HSPs)
scaffold0230 (332-370)||(23660-23698)
[»] scaffold0064 (1 HSPs)
scaffold0064 (322-371)||(57880-57930)
[»] scaffold0001 (1 HSPs)
scaffold0001 (333-371)||(76831-76869)
[»] scaffold0040 (2 HSPs)
scaffold0040 (323-371)||(11122-11170)
scaffold0040 (323-371)||(22222-22270)
[»] scaffold0061 (3 HSPs)
scaffold0061 (141-188)||(15419-15466)
scaffold0061 (141-188)||(24477-24524)
scaffold0061 (326-371)||(19320-19366)
[»] scaffold0679 (1 HSPs)
scaffold0679 (322-371)||(2599-2649)
[»] scaffold0321 (1 HSPs)
scaffold0321 (321-371)||(879-929)
[»] scaffold0235 (2 HSPs)
scaffold0235 (332-370)||(13334-13372)
scaffold0235 (332-370)||(25035-25073)
[»] scaffold0080 (2 HSPs)
scaffold0080 (138-188)||(59295-59345)
scaffold0080 (322-371)||(59475-59525)
[»] scaffold0075 (1 HSPs)
scaffold0075 (332-370)||(8608-8646)
[»] scaffold0045 (1 HSPs)
scaffold0045 (322-371)||(46941-46991)
[»] scaffold0035 (1 HSPs)
scaffold0035 (332-370)||(106372-106410)
[»] scaffold0009 (1 HSPs)
scaffold0009 (332-370)||(85055-85093)
[»] scaffold0004 (1 HSPs)
scaffold0004 (332-370)||(362812-362850)
[»] scaffold0439 (1 HSPs)
scaffold0439 (326-371)||(11295-11340)
[»] scaffold0434 (1 HSPs)
scaffold0434 (159-188)||(6769-6798)
[»] scaffold0379 (2 HSPs)
scaffold0379 (326-371)||(4668-4713)
scaffold0379 (326-371)||(14714-14759)
[»] scaffold0149 (1 HSPs)
scaffold0149 (326-371)||(20776-20821)
[»] scaffold0002 (1 HSPs)
scaffold0002 (322-371)||(397621-397670)
[»] scaffold0134 (1 HSPs)
scaffold0134 (324-371)||(10150-10198)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 36686054 - 36686172
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36686054 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 36686153  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  36686154 caaattattggagtcatat 36686172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 30821060 - 30821178
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||| |||||||||||||||||||||||   | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30821060 gatggtaacttgctgcatatgtttaaatgatgttgtcttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 30821159  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  30821160 caaattattggagtcatat 30821178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 38480285 - 38480167
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||||||||||| |||||||||   | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  38480285 gatggtgacttgctgcatatatttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatatctaagttgttaagttgtaagatgttgatc 38480186  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  38480185 caaattattggagtcatat 38480167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 11085170 - 11085112
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11085170 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 11085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 30820937 - 30820995
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30820937 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 30820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 15213869 - 15213812
Alignment:
Q  131 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15213869 agagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 15213812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 36685934 - 36685989
Alignment:
Q  133 agaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36685934 agaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 36685989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 11092908 - 11092850
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11092908 cagagagtgtgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 11092850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 9320423 - 9320468
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  9320423 taagatgattaatattgatgatttattttgatgattaaatgtgaaa 9320468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 14270266 - 14270349
Alignment:
Q  289 cttgctgttgtgatgaattaataccattaagatgtctaa-gttg--ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||| ||||||| |||||||||| |||| ||||  ||||||||||||||||| |||||||||||||||||||||    
T  14270266 cttgctgatgtgatgtattaatatcattaagatg-ctaatgttggtttaagttgtaagatgttgatccaaattattggagtcata 14270349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 45847862 - 45847945
Alignment:
Q  289 cttgctgttgtgatgaattaataccattaagatgtctaa-gttg--ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||| ||||||| |||||||||| |||| ||||  ||||||||||||||||| |||||||||||||||||||||    
T  45847862 cttgctgatgtgatgtattaatatcattaagatg-ctaatgttggtttaagttgtaagatgttgatccaaattattggagtcata 45847945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 15439457 - 15439398
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  15439457 cagagaggatgactaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 15439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 59314 - 59364
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  59314 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 59364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 8852087 - 8852137
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  8852087 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 8852137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 11066598 - 11066548
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  11066598 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 11066548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 12371408 - 12371358
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  12371408 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 12371358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 8468326 - 8468243
Alignment:
Q  289 cttgctgttgtgatgaattaataccattaagatgtctaa-gttg--ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||| ||||||| |||||||||| |||| ||||  ||||||||||||||||| ||||||||||||| |||||||    
T  8468326 cttgctgatgtgatgtattaatatcattaagatg-ctaatgttggtttaagttgtaagatgttgatccaaattattgaagtcata 8468243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 12128097 - 12128136
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  12128097 ttaagttgtaagatgttgatccaaattattggagtcatat 12128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 37727607 - 37727666
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
T  37727607 cagagaggatgattaagatgatttaatattgttgctttacgttgatgattaaatgtgaaa 37727666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 32434511 - 32434561
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  32434511 gtctaagttgtttaagttgtaagatgttgatccaaattatttgagtcatat 32434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 9389961 - 9390010
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  9389961 gtctaagttgtttaagttgtaaaatgttgatccaaattattggagtcata 9390010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 46386997 - 46387034
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  46386997 aagttgtaagatgttgatccaaattattggagtcatat 46387034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 48812018 - 48811981
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  48812018 aagttgtaagatgttgatccaaattattggagtcatat 48811981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 14183562 - 14183601
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  14183562 ttaagttgtaagatgttgatccaaattattggagttatat 14183601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 11392048 - 11392098
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| || ||||||||| || ||||||||||||||||||||||    
T  11392048 gtctaagttgtttaaattgtaagattttgatccaaattattggagtcatat 11392098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 13150467 - 13150517
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||| |||||||| |||||||||    
T  13150467 gtctaagttgtttaagttgtaagatgttgatctaaattatttgagtcatat 13150517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 17232466 - 17232428
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  17232466 ttaagttgtaaggtgttgatccaaattattggagtcata 17232428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 18075455 - 18075500
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||| ||||||||||||||| || ||||||||| |||||||||    
T  18075455 aagttgtcaagttgtaagatgttgattcaaattatttgagtcatat 18075500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 31415452 - 31415334
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31415452 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 31415353  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  31415352 caaattattggagtcatat 31415334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 31224758 - 31224876
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  31224758 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtttaagttgttaagttgtaagatgttgatc 31224857  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  31224858 caaattattggagtcatat 31224876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 15447801 - 15447919
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||| |||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  15447801 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 15447900  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  15447901 caaattattggagtcatat 15447919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 15447681 - 15447739
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15447681 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 15447739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 11913092 - 11913034
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11913092 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 11913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 31224635 - 31224693
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31224635 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31224693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 17693258 - 17693208
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17693258 gtctaagttgtttaagttgtaagatgttaatccaaattattggagtcatat 17693208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 6808291 - 6808250
Alignment:
Q  147 atgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6808291 atgattaatattgatgatttactttgatgattaaatgtgaaa 6808250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 17519823 - 17519877
Alignment:
Q  318 agatgtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  17519823 agatgtctaagttgtttaagttataagatgttgatccaaattattggagtcatat 17519877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 17534685 - 17534739
Alignment:
Q  318 agatgtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  17534685 agatgtctaagttgtttaagttataagatgttgatccaaattattggagtcatat 17534739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 22307505 - 22307555
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  22307505 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 22307555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 30175436 - 30175486
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  30175436 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 30175486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 40807126 - 40807076
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40807126 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 40807076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 41173241 - 41173291
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  41173241 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 41173291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 1465675 - 1465724
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  1465675 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcata 1465724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 1988912 - 1988971
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| ||||| || |||||||||||||||||||    
T  1988912 cagagaggatgattaagatgatttaatattgttgattcacgttgatgattaaatgtgaaa 1988971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 5215044 - 5214998
Alignment:
Q  326 aagttgttaa-gttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5215044 aagttgttaaagttgtaagatgttgatccaaattattggagtcatat 5214998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 17538237 - 17538187
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  17538237 gtctaagttgtttaagttgaaagatgttgatccaaattattggagtcatat 17538187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 20630373 - 20630411
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20630373 ttaagttgtaagatgttgatccaaattattggagtcata 20630411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 13516519 - 13516474
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||    
T  13516519 aagttgtcaagttgtaagattttgatccaaattattggagtcatat 13516474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 17519784 - 17519821
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  17519784 aagttgtaagatgttgatccaaattattggagtcatat 17519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 17534646 - 17534683
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  17534646 aagttgtaagatgttgatccaaattattggagtcatat 17534683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 40811928 - 40811891
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  40811928 aagttgtaagatgttgatccaaattattggagtcatat 40811891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 52466429 - 52466466
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  52466429 aagttgtaagatgttgatccaaattattggagtcatat 52466466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 5206524 - 5206575
Alignment:
Q  322 gtctaagttgtt--aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||  || |||||||||||| ||||||||||||||||||||||    
T  5206524 gtctaagttgtttaaatttgtaagatgttgatccaaattattggagtcatat 5206575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 12269415 - 12269376
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  12269415 ttaagttgtaaggtgttgatccaaattattggagtcatat 12269376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 15932387 - 15932426
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  15932387 ttaaattgtaagatgttgatccaaattattggagtcatat 15932426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 5841911 - 5841861
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| || ||||||||| || ||||||||||||||||||||||    
T  5841911 gtctaagttgtttaaattgtaagattttgatccaaattattggagtcatat 5841861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 23413560 - 23413598
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  23413560 ttaagttgtatgatgttgatccaaattattggagtcata 23413598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 45796977 - 45796939
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  45796977 ttaatttgtaagatgttgatccaaattattggagtcata 45796939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 49969963 - 49969991
Alignment:
Q  160 atgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||    
T  49969963 atgatttactttgatgattaaatgtgaaa 49969991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 17875262 - 17875144
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||    
T  17875262 gatggtgacttgctgcatatgtttaaatgatattatcttgctgttgtgaagaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 17875163  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  17875162 caaattattggagtcatat 17875144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 21555183 - 21555302
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccatt-aagatgtctaagttgttaagttgtaagatgttaat 351  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  21555183 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccatttaagatgtctaagttgttaagttgtaagatgttgat 21555282  T
Q  352 ccaaattattggagtcatat 371  Q
    ||||||||||||||||||||    
T  21555283 ccaaattattggagtcatat 21555302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 257 - 371
Target Start/End: Original strand, 21557853 - 21557967
Alignment:
Q  257 gtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatccaaa 356  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21557853 gtgacttgctgcatatgtttaaatgatgttgtcttgctgttatgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatccaaa 21557952  T
Q  357 ttattggagtcatat 371  Q
    |||||||||||||||    
T  21557953 ttattggagtcatat 21557967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 31455125 - 31455007
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||| |||||||||||||||||   | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  31455125 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaagtaataccattaagatgtctaagttgttaagttgtaagatgttgatc 31455026  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  31455025 caaattattggagtcatat 31455007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 31455738 - 31455620
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||     
T  31455738 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaagtaataccattaagatgtctaagttgttaagttgtaagatgttgata 31455639  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  31455638 caaattattggagtcatat 31455620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 12122325 - 12122443
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    ||||||||||||| ||||||||||||||||   | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||    
T  12122325 gatggtgacttgcggcatatgtttaaatgatgatgtcttgctgttgtgatgaattaataccattgagatgtttaagttgttaagttgtaagatgttgatc 12122424  T
Q  353 caaattattggagtcatat 371  Q
    ||||||||| |||||||||    
T  12122425 caaattatttgagtcatat 12122443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 253 - 367
Target Start/End: Complemental strand, 30615804 - 30615690
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    ||||||||||||||||||||||||||| ||   | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  30615804 gatggtgacttgctgcatatgtttaaacgatgatgtcttgctgttgcgatgaattaataccattaagatgtataagttgttaagttgtaagatgttgatc 30615705  T
Q  353 caaattattggagtc 367  Q
    |||||||||||||||    
T  30615704 caaattattggagtc 30615690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 12122202 - 12122260
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12122202 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 12122260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31455249 - 31455193
Alignment:
Q  132 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31455249 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31455193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31455862 - 31455806
Alignment:
Q  132 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31455862 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31455806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21555060 - 21555118
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  21555060 cagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaa 21555118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21557726 - 21557784
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  21557726 cagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaa 21557784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 30615926 - 30615868
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  30615926 cagagaggatgaataagatgattaatattgataatttacttttatgattaaatgtgaaa 30615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 36460341 - 36460283
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  36460341 cagagaggatgaacaagatgattaataatgatgatttactttgatgattaaatgtgaaa 36460283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 24212526 - 24212481
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24212526 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 24212481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 35852781 - 35852736
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35852781 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 35852736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 23200434 - 23200483
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  23200434 gtctaagttgtaaagttgtaagatgttaatccaagatattggagtcatat 23200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 5889092 - 5889151
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| || ||||||| ||||||| |||||||| |||||||||||||||||||    
T  5889092 cagagaggatgattatgatgatttaatattgttgatttacgttgatgattaaatgtgaaa 5889151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 29915349 - 29915387
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  29915349 ttaagttgtaagatgttgatccaaattattggagtcata 29915387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 12122445 - 12122475
Alignment:
Q  318 agatgtctaagttgttaagttgtaagatgtt 348  Q
    |||||||||||||||||||||||||||||||    
T  12122445 agatgtctaagttgttaagttgtaagatgtt 12122475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 25743744 - 25743706
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  25743744 taagatgtaagatgtcaatccaaattattggagtcatat 25743706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 21580010 - 21580129
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccatt-aagatgtctaagttgttaagttgtaagatgttaat 351  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  21580010 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccatttaagatgtctaagttgttaagttgtaagatgttgat 21580109  T
Q  352 ccaaattattggagtcatat 371  Q
    ||||||||||||||||||||    
T  21580110 ccaaattattggagtcatat 21580129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 29763672 - 29763789
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29763672 gatggtga-ttgctgcatatgtttaaatgatgatgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 29763770  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||| ||||||||    
T  29763771 caaattattgaagtcatat 29763789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 41680926 - 41681043
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||||||||||||||||||||    | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  41680926 gatggtgacttgctgcatatgtttaaatggtgatgtcttgttgttgtgatgaattaataccattaagatgtc-aagttgttaagttgtaagatgttgatc 41681024  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  41681025 caaattattggagtcatat 41681043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21579887 - 21579945
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21579887 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 21579945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 29763549 - 29763607
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29763549 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 29763607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 42560208 - 42560266
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42560208 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 42560266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 364
Target Start/End: Complemental strand, 22965797 - 22965686
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||| ||| ||||||||||||||||    | |||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||    ||    
T  22965797 gatggtgatttgatgcatatgtttaaatggtgttgtcttgctgttatgatgaatcaatactattaagatgtctaagttgttaagttttaagatgaagttc 22965698  T
Q  353 caaattattgga 364  Q
    ||||||||||||    
T  22965697 caaattattgga 22965686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 6102633 - 6102683
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  6102633 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 6102683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 39833840 - 39833792
Alignment:
Q  323 tctaagttgtt-aagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  39833840 tctaagttgtttaagttgtaagatgttgatccaaattattggagtcata 39833792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 2418971 - 2419009
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  2418971 taagttgtaagatgttgatccaaattattggagtcatat 2419009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 20982901 - 20982939
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20982901 ttaagttgtaagatgttgatccaaattattggagtcata 20982939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 27472572 - 27472610
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  27472572 ttaagttgtaagatgttgatccaaattattggagtcata 27472610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 38550267 - 38550305
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  38550267 ttaagttgtaagatgttgatccaaattattggagtcata 38550305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 39936932 - 39936982
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  39936932 gtctaagttgtttaagtcgtaagatgttgatccaaattattggagtcatat 39936982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 24713340 - 24713301
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  24713340 ttaagttgtaagatgttgatccaaattattgaagtcatat 24713301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 3273310 - 3273252
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||| |||||||||||||||||| ||   ||||||  |||||||||||||||||||    
T  3273310 cagagagtatgaataagatgattaatgttatggatttaagttgatgattaaatgtgaaa 3273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 18760706 - 18760648
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||| ||||||||||||||||||||||  | ||||  | |||||||||||||||||    
T  18760706 cagagagtatgaataagatgattaatattgtgggtttaagtagatgattaaatgtgaaa 18760648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 367
Target Start/End: Original strand, 35026960 - 35026994
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtc 367  Q
    |||||||||||||||| ||||||||||||||||||    
T  35026960 taagttgtaagatgttgatccaaattattggagtc 35026994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 39695406 - 39695455
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  39695406 gtctaagttgtgaagttgtaagttgttattccaagatattggagtcatat 39695455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 39834023 - 39833986
Alignment:
Q  151 ttaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  39834023 ttaatattgttgatttacgttgatgattaaatgtgaaa 39833986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 41680819 - 41680851
Alignment:
Q  133 agaggatgaataagatgattaatattgatgatt 165  Q
    |||||||||||||||||||| ||||||||||||    
T  41680819 agaggatgaataagatgatttatattgatgatt 41680851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 14388 - 14270
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||| |||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  14388 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagattttgatc 14289  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  14288 caaattattggagtcatat 14270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 14511 - 14453
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14511 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 14453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 22501037 - 22500919
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||| |||||||||||||||||||||||  || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  22501037 gatggtaacttgctgcatatgtttaaatgatgctgtcttgctattgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 22500938  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  22500937 caaattattggagtcatat 22500919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 22508971 - 22508853
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||| |||||||||||||||||||||||  || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  22508971 gatggtaacttgctgcatatgtttaaatgatgctgtcttgctattgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 22508872  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  22508871 caaattattggagtcatat 22508853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 24865574 - 24865692
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||| |||||||||||||||||   | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24865574 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctattgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 24865673  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||| ||||    
T  24865674 caaattattggagttatat 24865692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 7672356 - 7672450
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgt 347  Q
    |||||||||||| |||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7672356 gatggtgacttgatgcatacgtttaaatgatgctgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagtcgtaagatgt 7672450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 7672240 - 7672297
Alignment:
Q  131 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7672240 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 7672297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 24865452 - 24865509
Alignment:
Q  131 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24865452 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 24865509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 2524410 - 2524468
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2524410 cagagagtatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 2524468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 22501148 - 22501102
Alignment:
Q  142 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22501148 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 22501102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 22509082 - 22509036
Alignment:
Q  142 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22509082 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 22509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 5032246 - 5032296
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5032246 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 5032296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 6576343 - 6576293
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  6576343 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 6576293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 9975059 - 9975005
Alignment:
Q  318 agatgtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  9975059 agatgtctaagttgtttaagttgtaagatgttgatccaaattattgaagtcatat 9975005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 24436174 - 24436124
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  24436174 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 24436124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 24781762 - 24781812
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  24781762 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 24781812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 22689810 - 22689760
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  22689810 gtctaagttgtttaagttgtaagatgttgatccaaattatttgagtcatat 22689760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 22694406 - 22694356
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  22694406 gtctaagttgtttaagttgtaagatgttgatccaaattatttgagtcatat 22694356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 24883580 - 24883542
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  24883580 taagttgtaagatgttgatccaaattattggagtcatat 24883542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 9975098 - 9975061
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  9975098 aagttgtaagatgttgatccaaattattggagtcatat 9975061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 21367963 - 21367926
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||  |||||||||||||||||||||    
T  21367963 aagttgtaagatgttgttccaaattattggagtcatat 21367926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 25045179 - 25045130
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  25045179 gtctaagttgtaaagttgtaagttgttattccaagatattggagtcatat 25045130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6576543 - 6576487
Alignment:
Q  132 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||| |||||||||||||||||| |||  ||||||  |||||||||||| ||||||    
T  6576543 gagagtatgaataagatgattaatgttgtggatttaagttgatgattaaaagtgaaa 6576487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 1614 - 1496
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||| |||||||||||||||||   | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1614 gatggtgacttgatgcatatgtttaaatgatgttgtcttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 1515  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||| ||||    
T  1514 caaattattggagttatat 1496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 1736 - 1679
Alignment:
Q  131 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1736 agagaggattaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 1679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 10939 - 10825
Alignment:
Q  257 gtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatccaaa 356  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10939 gtgacttgctgcatatgtttaaatgatgttgtcttgctgttttgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatccaaa 10840  T
Q  357 ttattggagtcatat 371  Q
    |||||||||| ||||    
T  10839 ttattggagttatat 10825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 11053 - 11008
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  11053 taagatgattaatgttgatgatttactatgatgattaaatgtgaaa 11008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 20734251 - 20734368
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  20734251 gatggtgacttgctgcatatgtttaaatggtgttgtcttgctgttgtgatgaattaataccattaagatgtc-aagttgttaagttgtaagatgttgatc 20734349  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  20734350 caaattattggagtcatat 20734368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 20734128 - 20734186
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  20734128 cagagaggatgaataaaatgatttatattgatgatttactttgatgattaaatgtgaaa 20734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 27851373 - 27851315
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  27851373 cagagaggatgaataagatgatttatattgatgatttaccttgatgattaaatgtgaaa 27851315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 34296953 - 34297008
Alignment:
Q  133 agaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34296953 agaggatgaataagatgattaataatgatgatttactttgatgattagatgtgaaa 34297008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 22421123 - 22421080
Alignment:
Q  145 agatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22421123 agatgattaatattgatgatttactttgatgattaaatgtgaaa 22421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 2201277 - 2201232
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  2201277 taagatgattaatattgatgatttactttgatgattaaatatgaaa 2201232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 25956537 - 25956596
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  25956537 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 25956596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 17318992 - 17319042
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  17318992 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 17319042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 18708630 - 18708580
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  18708630 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 18708580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 31733833 - 31733794
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  31733833 ttaagttgtaagatgttgatccaaattattggagtcatat 31733794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 23151188 - 23151238
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  23151188 gtctaagttgtttaagtcgtaagatgttgatccaaattattggagtcatat 23151238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 31733887 - 31733841
Alignment:
Q  326 aagttgttaa-gttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  31733887 aagttgttaaagttgtaagatgttgatccaaattattggagtcatat 31733841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 19829827 - 19829876
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  19829827 gtctaagttgtaaagttgtaagatgttgttccaaagtattggagtcatat 19829876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 27573027 - 27573072
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtc 367  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  27573027 gtctaagttgtgaagttgtaagatgttgatccaaagtattggagtc 27573072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 27851059 - 27850984
Alignment:
Q  297 tgtgatgaattaataccattaagatgtctaa-gttg--ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||| |||||||||| |||| ||||  |||||||||||||||||  ||||||||||||||||||||    
T  27851059 tgtgatgtattaatatcattaagatg-ctaatgttggtttaagttgtaagatgttggtccaaattattggagtcata 27850984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 27323551 - 27323590
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  27323551 ttaagttgtaagatgttgatccaaattattggcgtcatat 27323590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 28708604 - 28708554
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| || ||||||||| || ||||||||||||||||||||||    
T  28708604 gtctaagttgtttaaattgtaagattttgatccaaattattggagtcatat 28708554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 25956661 - 25956714
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaat 306  Q
    |||||| |||||||| ||||||||||||||   | |||||||||||||||||||    
T  25956661 gatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 25956714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 6482 - 6599
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||||||||||||||||||||    | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  6482 gatggtgacttgctgcatatgtttaaatggtgttgtcttgctattgtgatgaattaataccattaagatgtc-aagttgttaagttgtaagatgttgatc 6580  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  6581 caaattattggagtcatat 6599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 6359 - 6417
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  6359 cagagaggatgaataagatgattaataataatgatttactttgatgattaaatgtgaaa 6417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 5593 - 5632
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  5593 ttaagttgtaagatgttgatccaaattattggagtcatat 5632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 5634 - 5688
Alignment:
Q  318 agatgtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  5634 agatctctaagttgtttaagttgtaagatgttgatccaaattattgcagtcatat 5688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 5758 - 5797
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  5758 ttaagttgtaagatgttgatccaaattattgcagtcatat 5797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 51274392 - 51274510
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||| ||||||||||||||||    | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51274392 gatggtgacttgatgcatatgtttaaatgtttttgttttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 51274491  T
Q  353 caaattattggagtcatat 371  Q
    |||||||||||||||||||    
T  51274492 caaattattggagtcatat 51274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 12328538 - 12328594
Alignment:
Q  132 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12328538 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatttgaaa 12328594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 8885555 - 8885510
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8885555 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 8885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 41305818 - 41305901
Alignment:
Q  289 cttgctgttgtgatgaattaataccattaagatgtctaa-gttg--ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||| ||||||| |||||||||| |||| ||||  ||||||||||||||||| |||||||||||||||||||||    
T  41305818 cttgctgatgtgatgtattaatatcattaagatg-ctaatgttggtttaagttgtaagatgttgatccaaattattggagtcata 41305901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 48300993 - 48300943
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  48300993 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 48300943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 35981952 - 35982001
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  35981952 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcata 35982001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 51274290 - 51274327
Alignment:
Q  151 ttaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51274290 ttaatattgatgatttactttgatgattaaatgtgaaa 51274327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 43697578 - 43697519
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| |||||||  |||||||||||||||||||    
T  43697578 cagagaggatgattaagatgatttaatattgttgatttaagttgatgattaaatgtgaaa 43697519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 20634508 - 20634546
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  20634508 taagttgtaagatgttgatccaaattattggagtcatat 20634546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 41227628 - 41227666
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  41227628 taagttgtaagatgttgatccaaattattggagtcatat 41227666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 46382831 - 46382869
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46382831 ttaagttgtaagatgttgatccaaattattggagtcata 46382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 11809420 - 11809457
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  11809420 aagttgtaagatgttgatccaaattattggagtcatat 11809457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 51326998 - 51326966
Alignment:
Q  133 agaggatgaataagatgattaatattgatgatt 165  Q
    |||||||||||||||||||||||||||||||||    
T  51326998 agaggatgaataagatgattaatattgatgatt 51326966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 28194365 - 28194424
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||| ||||| || ||||||| ||||||| |||||||| |||||||||||||||||||    
T  28194365 cagagaagatgattaggatgatttaatattgttgatttacgttgatgattaaatgtgaaa 28194424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 20587860 - 20587810
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||| ||||||||||| ||||||||||| ||||||||||    
T  20587860 gtctaagttgtttaagctgtaagatgttgatccaaattataggagtcatat 20587810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 20592398 - 20592348
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||| ||||||||||| ||||||||||| ||||||||||    
T  20592398 gtctaagttgtttaagctgtaagatgttgatccaaattataggagtcatat 20592348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 43542955 - 43542917
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  43542955 ttaagttgtaagatgttgaaccaaattattggagtcata 43542917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 1642615 - 1642566
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| ||||| |||||| |||||||||  ||||||||||||||    
T  1642615 gtctaagttgtaaagttctaagatattaatccaagatattggagtcatat 1642566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 8276868 - 8276917
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  8276868 gtctaagttgtaaagttgtaagttgttattccaagatattggagtcatat 8276917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 23073114 - 23073077
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  23073114 aagttctaagatgttgatccaaattattggagtcatat 23073077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 24726500 - 24726451
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  24726500 gtctaagttgtaaagttgtaagttgttattccaagatattggagtcatat 24726451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 28194489 - 28194542
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaat 306  Q
    |||||| |||||||| ||||||||||||||   | |||||||||||||||||||    
T  28194489 gatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 28194542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 33186150 - 33186040
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttaatc 352  Q
    |||||||||||||||||| |||||||||||   | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33186150 gatggtgacttgctgcatttgtttaaatgatgatgtcttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 33186051  T
Q  353 caaattattgg 363  Q
    ||||| |||||    
T  33186050 caaatcattgg 33186040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 33186273 - 33186215
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33186273 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 33186215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 10357358 - 10357412
Alignment:
Q  318 agatgtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  10357358 agatgtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 10357412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 362145 - 362062
Alignment:
Q  289 cttgctgttgtgatgaattaataccattaagatgtctaa-gttg--ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||| ||||||| |||||||||| |||| ||||  ||||||||||||||||| |||||||||||||||||||||    
T  362145 cttgctgatgtgatgtattaatatcattaagatg-ctaatgttggtttaagttgtaagatgttgatccaaattattggagtcata 362062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 10357306 - 10357356
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  10357306 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 10357356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 19609454 - 19609404
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  19609454 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 19609404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 15880855 - 15880810
Alignment:
Q  143 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||    
T  15880855 taagatgatcaatattgatgatttactttgattattaaatgtgaaa 15880810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 13844744 - 13844685
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  13844744 cagagaggatgattaagatgatttaatattattgatttacgttgatgattaaatgtgaaa 13844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 15042060 - 15042099
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15042060 ttaagttgtaagatgttgatccaaattattggagtcatat 15042099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 15112364 - 15112325
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15112364 ttaagttgtaagatgttgatccaaattattggagtcatat 15112325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 15869022 - 15869060
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15869022 ttaagttgtaagatgttgatccaaattattggagtcata 15869060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 19857427 - 19857389
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  19857427 ttaagttgtaagatgttgatccaaattattggagtcata 19857389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 15099205 - 15099156
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  15099205 gtctaagttgtttaagttgtaagatgttgatccaaattattagagtcata 15099156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 32851191 - 32851153
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  32851191 ttaatttgtaagatgttgatccaaattattggagtcata 32851153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 35812359 - 35812409
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||||| ||||| || ||||||||||||||||||||||    
T  35812359 gtctaagttgtttaagttgaaagatattgatccaaattattggagtcatat 35812409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 27995925 - 27995888
Alignment:
Q  334 aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  27995925 aagttgtaagatgttattccaaagtattggagtcatat 27995888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 32467169 - 32467218
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  32467169 gtctaagttgtaaagttgtaagttgttattccaagatattggagtcatat 32467218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 532 - 450
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaagatgtctaagttgttaa 335  Q
    ||||||||||||||||||||||| ||||||   | |||||||||||||||||||||||| |||||||||||||||||||||||    
T  532 gatggtgacttgctgcatatgttaaaatgatgttgtcttgctgttgtgatgaattaatatcattaagatgtctaagttgttaa 450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 4786 - 4728
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4786 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 4728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 368 - 310
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  368 cagagaggatgaataagatgattaataatgatgatttactttgatgattatatgtgaaa 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 344 - 299
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  344 aagttgttaagttgtaagatgttgatccaaattattggagtcatat 299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 3136 - 3077
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  3136 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 3077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 3047 - 2996
Alignment:
Q  321 tgtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  3047 tgtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 2996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 3234 - 3176
Alignment:
Q  130 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||| |||||||||||||||||| |||  ||||||  |||||||||||||||||||    
T  3234 cagagagtatgaataagatgattaatgttgtggatttaagttgatgattaaatgtgaaa 3176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 43700 - 43759
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  43700 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 43759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 47620 - 47679
Alignment:
Q  130 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  47620 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 47679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 43824 - 43877
Alignment:
Q  253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaat 306  Q
    |||||| |||||||| ||||||||||||||   | |||||||||||||||||||    
T  43824 gatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 43877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 9680 - 9730
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  9680 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 9730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 8308 - 8358
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  8308 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 8358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 9224 - 9274
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  9224 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 9274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 145917 - 145867
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  145917 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcatat 145867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 2556 - 2605
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  2556 gtctaagttgtttaagttgtaagatgttgatccaaattattggagtcata 2605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0639 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0639
Description:

Target: scaffold0639; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 7587 - 7626
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7587 ttaagttgtaagatgttgatccaaattattggagtcatat 7626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 2769 - 2808
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  2769 ttaagttgtaagatgttgatccaaattattggagtcatat 2808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1792 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1792
Description:

Target: scaffold1792; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 240 - 202
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  240 ttaagttgtaagatgttgatccaaattattggagtcata 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 23660 - 23698
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23660 ttaagttgtaagatgttgatccaaattattggagtcata 23698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 57930 - 57880
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  57930 gtctaagttgtttaagttgtaagatgttgatccaaattactggagtcatat 57880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 76869 - 76831
Alignment:
Q  333 taagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  76869 taagttgtaagatgttgatccaaattattggagtcatat 76831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 11170 - 11122
Alignment:
Q  323 tctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  11170 tctaagttgtgaagttgtaagatgttgttccaaaatattggagtcatat 11122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 22270 - 22222
Alignment:
Q  323 tctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  22270 tctaagttgtgaagttgtaagatgttgttccaaaatattggagtcatat 22222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 15419 - 15466
Alignment:
Q  141 aataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||| ||| |||||||  |||||||||||||||||||    
T  15419 aataagatgattaatgttgttgatttaagttgatgattaaatgtgaaa 15466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 24477 - 24524
Alignment:
Q  141 aataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||| ||| |||||||  |||||||||||||||||||    
T  24477 aataagatgattaatgttgttgatttaagttgatgattaaatgtgaaa 24524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 19320 - 19366
Alignment:
Q  326 aagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||| |||| |||||||||| ||||||||||||||||||||||    
T  19320 aagttgttcaagtcgtaagatgttgatccaaattattggagtcatat 19366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0679 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 2599 - 2649
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| || ||||||||| || ||||||||||||||||||||||    
T  2599 gtctaagttgtttaaattgtaagattttgatccaaattattggagtcatat 2649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 879 - 929
Alignment:
Q  321 tgtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  879 tgtctaagttgtaaagttgtaagttgttattccaagatattggagtcatat 929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 13372 - 13334
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  13372 ttaatttgtaagatgttgatccaaattattggagtcata 13334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 25073 - 25035
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  25073 ttaatttgtaagatgttgatccaaattattggagtcata 25035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 59295 - 59345
Alignment:
Q  138 atgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||| |||  ||||||  |||||||||||||||||||    
T  59295 atgaataagatgattaatgttgtggatttaagttgatgattaaatgtgaaa 59345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 59475 - 59525
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| |||||| |||||||| ||||||||||||| ||||||||    
T  59475 gtctaagttgtttaagttgcaagatgttgatccaaattattgaagtcatat 59525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 8608 - 8646
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  8608 ttaagttgtaatatgttgatccaaattattggagtcata 8646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 46941 - 46991
Alignment:
Q  322 gtctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||| ||||| ||||||||| ||||||||| ||||||||||||    
T  46941 gtctaagttgtttaagttataagatgttgatccaaattgttggagtcatat 46991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 106410 - 106372
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  106410 ttaagttgtaagatgttgatccaagttattggagtcata 106372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 85093 - 85055
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  85093 ttaagttttaagatgttgatccaaattattggagtcata 85055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 362850 - 362812
Alignment:
Q  332 ttaagttgtaagatgttaatccaaattattggagtcata 370  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  362850 ttaagttgtaagatgttgatccaaattattggattcata 362812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 11340 - 11295
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||| |||||||||| |||| ||||||| ||||||||||||||    
T  11340 aagttgtcaagttgtaagttgttgatccaaagtattggagtcatat 11295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 6769 - 6798
Alignment:
Q  159 gatgatttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||    
T  6769 gatgatttactttgatgattaaatgtgaaa 6798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 4668 - 4713
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  4668 aagttgttaagttgtaagatgttgttccaaagtattggattcatat 4713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 14714 - 14759
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  14714 aagttgttaagttgtaagatgttgttccaaagtattggattcatat 14759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 20821 - 20776
Alignment:
Q  326 aagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||| |||||||||||||||  |||||| ||||||||||||||    
T  20821 aagttgtcaagttgtaagatgttgttccaaagtattggagtcatat 20776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 397670 - 397621
Alignment:
Q  322 gtctaagttgttaagttgtaagatgttaatccaaattattggagtcatat 371  Q
    ||||||||||| |||||||||| ||||| |||||  ||||||||||||||    
T  397670 gtctaagttgtaaagttgtaagttgttattccaagatattggagtcatat 397621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 10150 - 10198
Alignment:
Q  324 ctaagttgtt-aagttgtaagatgttaatccaaattattggagtcatat 371  Q
    |||||||||| |||| |||||| ||| ||||||||||||||||||||||    
T  10150 ctaagttgtttaagtcgtaagacgttgatccaaattattggagtcatat 10198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2793 times since January 2019
Visitors: 4801