View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0764_low_9 (Length: 323)

Name: NF0764_low_9
Description: NF0764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0764_low_9
NF0764_low_9
[»] scaffold0055 (17 HSPs)
scaffold0055 (87-255)||(12344-12512)
scaffold0055 (87-255)||(34401-34568)
scaffold0055 (87-255)||(53573-53740)
scaffold0055 (87-245)||(35525-35682)
scaffold0055 (97-241)||(43197-43340)
scaffold0055 (97-241)||(74583-74726)
scaffold0055 (97-241)||(55911-56054)
scaffold0055 (97-241)||(19679-19822)
scaffold0055 (87-163)||(11191-11267)
scaffold0055 (87-163)||(11363-11439)
scaffold0055 (87-163)||(30004-30080)
scaffold0055 (87-163)||(18699-18775)
scaffold0055 (87-163)||(30178-30254)
scaffold0055 (87-163)||(36570-36646)
scaffold0055 (87-163)||(44232-44308)
scaffold0055 (87-163)||(56957-57033)
scaffold0055 (87-163)||(75619-75695)
[»] scaffold0052 (16 HSPs)
scaffold0052 (87-255)||(72023-72191)
scaffold0052 (87-255)||(61496-61663)
scaffold0052 (97-241)||(3561-3704)
scaffold0052 (97-255)||(30308-30470)
scaffold0052 (97-241)||(41577-41720)
scaffold0052 (97-241)||(53517-53660)
scaffold0052 (97-241)||(18086-18229)
scaffold0052 (87-163)||(65985-66061)
scaffold0052 (87-163)||(73096-73172)
scaffold0052 (87-163)||(73268-73344)
scaffold0052 (87-163)||(2581-2657)
scaffold0052 (87-163)||(17117-17193)
scaffold0052 (87-163)||(40598-40674)
scaffold0052 (87-163)||(42522-42598)
scaffold0052 (87-163)||(54561-54637)
scaffold0052 (87-163)||(65811-65887)
[»] scaffold0021 (10 HSPs)
scaffold0021 (89-255)||(95798-95964)
scaffold0021 (86-255)||(39258-39426)
scaffold0021 (97-241)||(49189-49332)
scaffold0021 (113-255)||(34511-34652)
scaffold0021 (87-255)||(50265-50432)
scaffold0021 (86-163)||(41063-41140)
scaffold0021 (88-160)||(40899-40971)
scaffold0021 (87-163)||(51404-51480)
scaffold0021 (87-163)||(51576-51652)
scaffold0021 (87-161)||(40724-40798)
[»] scaffold0152 (6 HSPs)
scaffold0152 (87-248)||(19170-19330)
scaffold0152 (87-248)||(33382-33542)
scaffold0152 (87-248)||(37996-38156)
scaffold0152 (87-163)||(28259-28335)
scaffold0152 (87-163)||(37035-37111)
scaffold0152 (87-163)||(18207-18283)
[»] scaffold0515 (2 HSPs)
scaffold0515 (87-248)||(11600-11760)
scaffold0515 (87-163)||(10639-10715)
[»] chr6 (1 HSPs)
chr6 (87-248)||(9477454-9477614)
[»] chr5 (1 HSPs)
chr5 (88-246)||(21098509-21098666)
[»] scaffold1084 (1 HSPs)
scaffold1084 (87-163)||(2879-2955)


Alignment Details
Target: scaffold0055 (Bit Score: 153; Significance: 4e-81; HSPs: 17)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 12512 - 12344
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12512 ggacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattcgccgaagaaacgaaaaa 12413  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  12412 gcaaaccccccgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaag 12344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 34401 - 34568
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34401 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaa 34500  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  34501 gcaaa-cccccgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaag 34568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 53573 - 53740
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53573 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaa 53672  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  53673 gcaaa-cccccgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaag 53740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 87 - 245
Target Start/End: Original strand, 35525 - 35682
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35525 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaa 35624  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgg 245  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  35625 gcaaa-cccccgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgg 35682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 43197 - 43340
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43197 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccc 43295  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  43296 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 43340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 74583 - 74726
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  74583 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccc 74681  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  74682 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 74726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 55911 - 56054
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||     
T  55911 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-ccct 56009  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  56010 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 56054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 19822 - 19679
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  19822 aggacctccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcgtcattagccgaagaaacgaaaaagcaaac-ccc 19724  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  19723 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 19679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 11267 - 11191
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  11267 ggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcg 11191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 11439 - 11363
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  11439 ggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 11363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 30080 - 30004
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  30080 ggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgtaaactgcgaatattttaagcg 30004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 18775 - 18699
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  18775 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 18699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 30254 - 30178
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||  |||| |||||||||||||||||| ||||||||||||| ||||||    
T  30254 ggacatcataaggaccttcaccgagaaatttgggcaattttgcacgcgggaatcgtcaactgcgaatattctaagcg 30178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 36570 - 36646
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  36570 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 36646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 44232 - 44308
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  44232 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 44308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 56957 - 57033
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  56957 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 57033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 75619 - 75695
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| |  ||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||    
T  75619 ggacatcataaggaccttctccgagaaattttggcaattttgcacgtgggaatcgttaactgcgaatatcttaagcg 75695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 153; Significance: 4e-81; HSPs: 16)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 72023 - 72191
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  72023 ggacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattcgccgaagaaacgaaaaa 72122  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  72123 gcaaaccccccgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaag 72191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 61663 - 61496
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  61663 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaa 61564  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  61563 gcaaac-ccccgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaag 61496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 3704 - 3561
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3704 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaac-ccc 3606  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  3605 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 3561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 255
Target Start/End: Original strand, 30308 - 30470
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30308 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccc 30406  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctgg-----cttggcatgggcaggggaag 255  Q
    ||||||||||| ||||||||||||||||||||||| |||     ||||||||||||||||||||    
T  30407 cgtttggctcccgaattgcaaaatgccaccttgccttggctaaacttggcatgggcaggggaag 30470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 41720 - 41577
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||     
T  41720 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-ccct 41622  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  41621 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 41577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 53517 - 53660
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||     
T  53517 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-ccct 53615  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  53616 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 53660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 18229 - 18086
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  18229 aggacctccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcgtcattagccgaagaaacgaaaaagcaaac-ccc 18131  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  18130 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 18086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 65985 - 66061
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  65985 ggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgtaaactgcgaatattttaagcg 66061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 73096 - 73172
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  73096 ggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 73172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 73268 - 73344
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  73268 ggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcg 73344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 2657 - 2581
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  2657 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 2581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 17193 - 17117
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  17193 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 17117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 40674 - 40598
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  40674 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 40598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 42522 - 42598
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| |  ||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||    
T  42522 ggacatcataaggaccttctccgagaaattttggcaattttgcacgtgggaatcgttaactgcgaatatcttaagcg 42598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 54561 - 54637
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  54561 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 54637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 65811 - 65887
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||  |||| |||||||||||||||||| ||||||||||||| ||||||    
T  65811 ggacatcataaggaccttcaccgagaaatttgggcaattttgcacgcgggaatcgtcaactgcgaatattctaagcg 65887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 135; Significance: 2e-70; HSPs: 10)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 95798 - 95964
Alignment:
Q  89 acatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagc 188  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  95798 acatcataaggacctccagcgagaaattttagcaaatttgcacgcgggattcgttacttgcgaatattttaagcgtcattagccgaagaaacgaaaaagc 95897  T
Q  189 aaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  95898 aaaccccccgtttggctcccgaattgcaaaatgtcaccttgccttggcttggcacgggcaggggaag 95964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 39258 - 39426
Alignment:
Q  86 tggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaa 185  Q
    |||||||||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  39258 tggacatcaagaggacctccagcgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagctttattagccgaagaaacgaaaa 39357  T
Q  186 agcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  39358 agcaaa-cccctgtttggctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaag 39426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 49189 - 49332
Alignment:
Q  97 aggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc 196  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49189 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccc 49287  T
Q  197 cgtttggctccggaattgcaaaatgccaccttgccctggcttggc 241  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  49288 cgtttggctcccgaattgcaaaatgccaccttgccttggcttggc 49332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 34511 - 34652
Alignment:
Q  113 aattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctccggaat 212  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  34511 aattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcttcattagccgaagaaacgaaaaagcaaacccccc-tttggctcccgaat 34609  T
Q  213 tgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  34610 tgcaaaatgccaccttgccttggcttggcatgggcaggggaag 34652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 50265 - 50432
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||  |||| |||||| |||| ||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50265 ggacatcaaaaggatctccagagagagattttggcaattatgcacgcggaaatcgttaactgcgaatattttaagcgtcattagctgaagaaacgaaaaa 50364  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaag 255  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  50365 gcaaa-cccccgtttggctcccgaattgcaacatgccaccttgccttggcttggcatgggcaggggaag 50432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 41063 - 41140
Alignment:
Q  86 tggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    |||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  41063 tggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 41140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 40899 - 40971
Alignment:
Q  88 gacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaa 160  Q
    |||||||| ||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  40899 gacatcataaggaccttcaccgagaaattttggcaagtttgcacgcgggaatcgttaactgcgaatattttaa 40971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 51404 - 51480
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  51404 ggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 51480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 51576 - 51652
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  51576 ggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcg 51652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 40724 - 40798
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaag 161  Q
    ||||||||| ||||||| || ||||||||||| || | |||||||| | ||||||||||||||||||||||||||    
T  40724 ggacatcataaggaccttcaccgagaaattttggcgattttgcacgagagaatcgttaactgcgaatattttaag 40798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 19330 - 19170
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| ||||||    
T  19330 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaa 19231  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggca 248  Q
     |||| ||||  ||||||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  19230 acaaa-ccccaatttggctcccgaattgcaaaatgtcgccttgccgtggcttggcatgggca 19170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 33382 - 33542
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| ||||||    
T  33382 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaa 33481  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggca 248  Q
     |||| ||||  ||||||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  33482 acaaa-ccccaatttggctcccgaattgcaaaatgtcgccttgccgtggcttggcatgggca 33542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 38156 - 37996
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| ||||||    
T  38156 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaa 38057  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggca 248  Q
     |||| ||||  ||||||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  38056 acaaa-ccccaatttggctcccgaattgcaaaatgtcgccttgccgtggcttggcatgggca 37996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 28335 - 28259
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| |||||||||| ||||||||||| ||   ||||| ||||||| ||||||| |||||||||||||||||    
T  28335 ggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcg 28259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 37111 - 37035
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| |||||||||| ||||||||||| ||   ||||| ||||||| ||||||| |||||||||||||||||    
T  37111 ggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcg 37035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 18283 - 18207
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| |||||||||| ||||||||||| ||   ||||| | ||||| ||||||| |||||||||||||||||    
T  18283 ggacatcataaggacctccaccgagaaattttggcgtttttgctcacgggattcgttaagtgcgaatattttaagcg 18207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 11760 - 11600
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| ||||||    
T  11760 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaa 11661  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggca 248  Q
     |||| ||||  ||||||||| ||||| ||||||| | ||||||| ||||||||||||||||    
T  11660 acaaa-ccccaatttggctcccgaattccaaaatgtcgccttgccgtggcttggcatgggca 11600  T

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Target: scaffold0515; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 10715 - 10639
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| |||||||||| ||||||||||| ||   ||||| ||||||| ||||||| |||||||||||||||||    
T  10715 ggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcg 10639  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 9477454 - 9477614
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaa 186  Q
    ||||||||| |||| ||||| ||||||| ||| |||  |||||||| ||||   ||||| | |||||||||||||||||| |||||||||||| ||||||    
T  9477454 ggacatcataaggatctccatcgagaaactttggcatttttgcacgagggatgagttaattacgaatattttaagcgtcaatagccgaagaaatgaaaaa 9477553  T
Q  187 gcaaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatgggca 248  Q
     |||| ||||  ||||||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  9477554 acaaa-ccccaatttggctcccgaattgcaaaatgtcgccttgccgtggcttggcatgggca 9477614  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 21098509 - 21098666
Alignment:
Q  88 gacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaag 187  Q
    |||||||| |||||||||| ||||||||||| |||| |||||| | | || || |||| | |||||||||||||||||| |||||||| | | ||||||     
T  21098509 gacatcataaggacctccaccgagaaattttggcaattttgcatgagagattcattaattacgaatattttaagcgtcaatagccgaatatatgaaaaaa 21098608  T
Q  188 caaaccccccgtttggctccggaattgcaaaatgccaccttgccctggcttggcatggg 246  Q
    |||| |||  ||||| |||| ||||||||||||||| | | | | ||||||||||||||    
T  21098609 caaa-ccctagtttgcctcccgaattgcaaaatgccgcatcgtcgtggcttggcatggg 21098666  T

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Target: scaffold1084 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 2955 - 2879
Alignment:
Q  87 ggacatcatcaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||    
T  2955 ggacatcataaggaccttcaccgagaaattttggcaattttgcaggcggaaatcgtcaactgtgaatattttaagcg 2879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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