View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765-INSERTION-6 (Length: 613)
Name: NF0765-INSERTION-6
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765-INSERTION-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Complemental strand, 32266598 - 32265995
Alignment:
| Q |
8 |
ctgataataacaatgagattgttttagagacgaaatcgaagattgttatcagaaatggtaacaaatttgtagctaataatgctcgtgaatttgttgcgga |
107 |
Q |
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| T |
32266598 |
ctgataataacaatgagattgttctagagacgaaatccaagattgttatcagaaatggtaacaaatttgtagctaatcatgctcgtgaatttgttgcgga |
32266499 |
T |
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| Q |
108 |
gaagaaaaagaagctgaaaatggttgggattggtggtgtttcgaataattcagattcgagggatttcagatatggttcaaagaaaatcaaatttgtagat |
207 |
Q |
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| T |
32266498 |
gaagaaaaagaagctgaaaatggttgggattggtg---tttcgaataattcagatttgagggatttcagatatggttcaaagaaaatcaaatttgtagat |
32266402 |
T |
|
| Q |
208 |
tcaagtgttccaaactatgaattcaagaggcctaaggtggaagcagataaatctggatttgatgattgtagaagcaaatacaataacaatgtaacaacta |
307 |
Q |
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| T |
32266401 |
tcaagtgttccaaactatgaattcaagaggcctaaggtggaagcagataaatctggatttgatgattgtagaagcaaatacaataacaatgtaacaacta |
32266302 |
T |
|
| Q |
308 |
tatttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcaagaaagaaagcaaactctgaagga-ttttcttttagcaaca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
32266301 |
tatttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcgagaaagaaagcaaactctgaaggatttttcttttagcaaca |
32266202 |
T |
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| Q |
407 |
aaaatgaagaaatctatgagaatggtagcaaatgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgt |
506 |
Q |
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| T |
32266201 |
aaaataaagaaatctatgagaatggtagcaaaagtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgt |
32266102 |
T |
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| Q |
507 |
tgagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaatagaaagaaattatcatcaagcaac |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266101 |
tgagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaatagaaagaaattatcatcaagcaac |
32266002 |
T |
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| Q |
607 |
aagggta |
613 |
Q |
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||||||| |
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| T |
32266001 |
aagggta |
32265995 |
T |
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