View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0765-INSERTION-7 (Length: 662)

Name: NF0765-INSERTION-7
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0765-INSERTION-7
NF0765-INSERTION-7
[»] chr4 (6 HSPs)
chr4 (136-662)||(41490519-41491042)
chr4 (398-552)||(41482963-41483120)
chr4 (424-556)||(41496947-41497080)
chr4 (149-214)||(41482864-41482929)
chr4 (8-62)||(41490394-41490448)
chr4 (137-214)||(41496832-41496910)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 136 - 662
Target Start/End: Original strand, 41490519 - 41491042
Alignment:
Q  136 ggcaatgacacttcagaattactcccaaattggagacccacaatggaatccttattttggaaaatactgtaagttttatcaactttcaaataatgtactt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41490519 ggcaatgacacttcagaattactcccaaattggagacccacaatggaatccttattttggaaaatactgtaagttttatcaactttcaaataatgtactt 41490618  T
Q  236 ttctgcatgttactaaggccctgtctactcatagtatatgtttgactataccaagaactttgctcnnnnnnnnnctttctctttgcgagtgtatggcttg 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| |||||    
T  41490619 ttctgcatgttactaaggccctgtctactcatagtatatgtttgactataccaagaactttgctcttttttt---ttcctctttgcgagtgtattgcttg 41490715  T
Q  336 tgtgagtttgagcattcaaatttacattcttttcttttttctattgttagaaaacagttttgaatttaaatattcttctcatgttccacaggtcagctgg 435  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41490716 tgtcagtttgagcattcaaatttacattcttttcttttttctattgttaaaaaacagttttgaatttaaatattcttctcatgttccacaggtcagctgg 41490815  T
Q  436 caaagagttgttgtctctaatcgccctgtctttgaatcttgatgaaaattattttgagaagatcagtgccttaaatttaccagaagcttttcttcgcctt 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  41490816 caaagagttgttgtctttaatcgccctgtctttgaatcttgatgaaaattattttgagaagatcagtgccttaaataaaccagaagcttttcttcgcctt 41490915  T
Q  536 ttgcgctatccaggtttattagtatttattttattttctgaaccttcttaattaagcacatagcctaatcggtaataccaattttgtttgccttttactg 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41490916 ttgcgctatccaggtttattagtatttattttattttctgaaccttcttaattaagcacatagcctaatcggtaataccaattttgtttgccttttactg 41491015  T
Q  636 ttgataacgtgtttgtaaattacatta 662  Q
    |||||||||||||||||||||||||||    
T  41491016 ttgataacgtgtttgtaaattacatta 41491042  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 398 - 552
Target Start/End: Original strand, 41482963 - 41483120
Alignment:
Q  398 aatttaaatattcttctcatgttccaca---ggtcagctggcaaagagttgttgtctctaatcgccctgtctttgaatcttgatgaaaattattttgaga 494  Q
    ||||| ||||||||||| ||||||||||   ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||| |||    
T  41482963 aatttcaatattcttcttatgttccacaacaggtcagctggcaaagagttgttgtctctaattgccttgtctttgaatcttgatgaagattactttcaga 41483062  T
Q  495 agatcagtgccttaaatttaccagaagcttttcttcgccttttgcgctatccaggttt 552  Q
    |||||||||||| |||   ||| || ||||||||||||||||||||||||||||||||    
T  41483063 agatcagtgcctcaaacaaaccggatgcttttcttcgccttttgcgctatccaggttt 41483120  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 424 - 556
Target Start/End: Original strand, 41496947 - 41497080
Alignment:
Q  424 caggtcagctggcaaagagttgttgtctctaatcgccctgtctttgaatctt-gatgaaaattattttgagaagatcagtgccttaaatttaccagaagc 522  Q
    |||||||||||||||||||||| | |||||||| ||| ||||||||| |||  ||||||||| | |||||||||||  |||||||||   ||||| |||     
T  41496947 caggtcagctggcaaagagttgctttctctaattgccttgtctttgagtctaagatgaaaatcactttgagaagataggtgccttaagcataccaaaagt 41497046  T
Q  523 ttttcttcgccttttgcgctatccaggtttatta 556  Q
    ||||||||||||||||| ||||||||||||||||    
T  41497047 ttttcttcgccttttgcactatccaggtttatta 41497080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 41482864 - 41482929
Alignment:
Q  149 cagaattactcccaaattggagacccacaatggaatccttattttggaaaatactgtaagttttat 214  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  41482864 cagaattactaccaaattggaaacccacaatggaatccttattttggaaaacactgtaagttttat 41482929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 41490394 - 41490448
Alignment:
Q  8 ctaatggtatgaatttcctttgtgttgtgcacattcttcattaggaataatgaaa 62  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41490394 ctaatggtatgaatttcctttgggttgtgcacattcttcattaggaataatgaaa 41490448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 41496832 - 41496910
Alignment:
Q  137 gcaatgacacttcagaattactcccaaattggagacccacaatggaatc-cttattttggaaaatactgtaagttttat 214  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||||  |||||||||||||||||||||| |||||    
T  41496832 gcaatgacactctagaattactgccaaattggatacccacaatggaatcttttattttggaaaatactgtaaggtttat 41496910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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