View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0765_high_1 (Length: 647)

Name: NF0765_high_1
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0765_high_1
NF0765_high_1
[»] scaffold0470 (1 HSPs)
scaffold0470 (29-631)||(1045-1651)
[»] chr8 (12 HSPs)
chr8 (29-631)||(6611757-6612363)
chr8 (39-131)||(39482685-39482777)
chr8 (41-120)||(45425631-45425710)
chr8 (417-449)||(6585539-6585571)
chr8 (396-426)||(6660905-6660935)
chr8 (396-426)||(6741307-6741337)
chr8 (39-113)||(1875564-1875638)
chr8 (396-424)||(6582647-6582675)
chr8 (39-124)||(32678788-32678873)
chr8 (41-114)||(36967433-36967506)
chr8 (39-120)||(39405832-39405913)
chr8 (41-73)||(40028588-40028620)
[»] scaffold0018 (1 HSPs)
scaffold0018 (41-131)||(135990-136080)
[»] scaffold0110 (1 HSPs)
scaffold0110 (39-131)||(1774-1866)
[»] chr3 (9 HSPs)
chr3 (39-131)||(37312020-37312112)
chr3 (39-109)||(8679029-8679099)
chr3 (39-129)||(27471405-27471495)
chr3 (41-73)||(45811727-45811759)
chr3 (39-131)||(43253816-43253908)
chr3 (39-109)||(29023941-29024011)
chr3 (42-120)||(33491047-33491125)
chr3 (41-73)||(43719338-43719370)
chr3 (41-73)||(45710922-45710954)
[»] chr5 (5 HSPs)
chr5 (41-122)||(29570464-29570545)
chr5 (39-120)||(9515816-9515897)
chr5 (39-131)||(8698379-8698471)
chr5 (39-71)||(3348136-3348168)
chr5 (39-112)||(15818450-15818523)
[»] chr4 (14 HSPs)
chr4 (39-120)||(7061634-7061715)
chr4 (39-121)||(47464334-47464416)
chr4 (39-120)||(43237313-43237394)
chr4 (39-73)||(35380350-35380384)
chr4 (39-132)||(16821289-16821382)
chr4 (39-120)||(32884871-32884952)
chr4 (39-132)||(33790689-33790782)
chr4 (41-73)||(41711473-41711505)
chr4 (40-120)||(44536166-44536246)
chr4 (39-73)||(32469965-32469999)
chr4 (42-120)||(4972633-4972711)
chr4 (39-116)||(40122828-40122905)
chr4 (41-73)||(43902326-43902358)
chr4 (39-71)||(54123711-54123743)
[»] chr1 (7 HSPs)
chr1 (39-122)||(12039152-12039235)
chr1 (41-132)||(24991608-24991699)
chr1 (39-132)||(28749061-28749154)
chr1 (42-109)||(30754919-30754986)
chr1 (39-73)||(36701991-36702025)
chr1 (39-73)||(36718095-36718129)
chr1 (41-73)||(917096-917128)
[»] chr7 (7 HSPs)
chr7 (39-120)||(22738778-22738859)
chr7 (39-120)||(24516260-24516341)
chr7 (39-73)||(27921065-27921099)
chr7 (40-131)||(28103811-28103902)
chr7 (39-114)||(44180282-44180357)
chr7 (39-73)||(7457439-7457473)
chr7 (39-73)||(29835432-29835466)
[»] scaffold0302 (1 HSPs)
scaffold0302 (41-120)||(16170-16249)
[»] scaffold0003 (1 HSPs)
scaffold0003 (39-73)||(252540-252574)
[»] chr2 (2 HSPs)
chr2 (39-118)||(3323250-3323329)
chr2 (41-120)||(16377618-16377697)
[»] chr6 (6 HSPs)
chr6 (37-131)||(23142735-23142829)
chr6 (39-131)||(32440597-32440689)
chr6 (41-71)||(7764251-7764281)
chr6 (37-120)||(15058185-15058268)
chr6 (41-131)||(6802003-6802093)
chr6 (38-71)||(7072229-7072262)
[»] scaffold0095 (1 HSPs)
scaffold0095 (39-120)||(50274-50355)


Alignment Details
Target: scaffold0470 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 29 - 631
Target Start/End: Original strand, 1045 - 1651
Alignment:
Q  29 atatgataccactaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcaggga 128  Q
    ||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  1045 atatgataccactaattttaccattgaaatcaacataattaatcatttttttaataatcgtgtgtaaatcttaaacgactaatattgtaagatggaggga 1144  T
Q  129 gtacaaatgattagtagcttatttatagcagttataatagcgtcattgtagtttgagatacatgacaatcaatgttttaagagtgtcgattatatatgta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145 gtacaaatgattagtagcttatttatagcagttataatagcgtcattgtagtttgagatacatgacaatcaatgttttaagagtgtcgattatatatgta 1244  T
Q  229 ttgaaataaaaaagtatcagttatatagttgtcttaaatctttgtgtttggtgcttctgttgatatgatggactaaatagttgggtctaacgtaagtggt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||    
T  1245 ttgaaataaaaaagtatcagttatatagttgtcttaaatctttatgtttggtgcttctgttgatatggtggactaaataattgagtctaacgtaaatggt 1344  T
Q  329 tgttgtacaaaatgtgtgactattgtgatttggaaagataatgagtttgatttcaactaaaaaatatatagcaagatgttcttgatattatattgtacca 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1345 tgttgtacaaaatgtgtgactattgtgatttggaaagataatgagtttgatttcaactaaaaaatatatagcaagatgttcttgatattatattgtacca 1444  T
Q  429 aacaagtct----ttaagtttatttgtttttccatctctttaaagtaattctctttcacttgctataaaccccaannnnnnnnctctctttcaaatccat 524  Q
    |||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  1445 aacaagtctttaattaagtttatttgtttttccatctcttaaaagtaattctctttcacttgctataaaccccaattttttctctctctttcaaatccat 1544  T
Q  525 caatgaactagaaaatctataaatgaatcttaatttgtacatgactctactcccccgacctcccttaacccgtaaaatctctatcccttctccactcttt 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1545 caatgaactagaaaatctataaatgaatcttaatttgtacatgactctactcccccgacctcccttaacccgtaaaatctctatcccttcttcactcttt 1644  T
Q  625 tgtgtct 631  Q
    |||||||    
T  1645 tgtgtct 1651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 29 - 631
Target Start/End: Original strand, 6611757 - 6612363
Alignment:
Q  29 atatgataccactaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcaggga 128  Q
    ||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  6611757 atatgataccactaattttaccattgaaatcaacataattaatcatttttttaataatcgtgtgtaaatcttaaacgactaatattgtaagatggaggga 6611856  T
Q  129 gtacaaatgattagtagcttatttatagcagttataatagcgtcattgtagtttgagatacatgacaatcaatgttttaagagtgtcgattatatatgta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6611857 gtacaaatgattagtagcttatttatagcagttataatagcgtcattgtagtttgagatacatgacaatcaatgttttaagagtgtcgattatatatgta 6611956  T
Q  229 ttgaaataaaaaagtatcagttatatagttgtcttaaatctttgtgtttggtgcttctgttgatatgatggactaaatagttgggtctaacgtaagtggt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||    
T  6611957 ttgaaataaaaaagtatcagttatatagttgtcttaaatctttatgtttggtgcttctgttgatatggtggactaaataattgagtctaacgtaaatggt 6612056  T
Q  329 tgttgtacaaaatgtgtgactattgtgatttggaaagataatgagtttgatttcaactaaaaaatatatagcaagatgttcttgatattatattgtacca 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612057 tgttgtacaaaatgtgtgactattgtgatttggaaagataatgagtttgatttcaactaaaaaatatatagcaagatgttcttgatattatattgtacca 6612156  T
Q  429 aacaagtct----ttaagtttatttgtttttccatctctttaaagtaattctctttcacttgctataaaccccaannnnnnnnctctctttcaaatccat 524  Q
    |||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  6612157 aacaagtctttaattaagtttatttgtttttccatctcttaaaagtaattctctttcacttgctataaaccccaattttttctctctctttcaaatccat 6612256  T
Q  525 caatgaactagaaaatctataaatgaatcttaatttgtacatgactctactcccccgacctcccttaacccgtaaaatctctatcccttctccactcttt 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6612257 caatgaactagaaaatctataaatgaatcttaatttgtacatgactctactcccccgacctcccttaacccgtaaaatctctatcccttcttcactcttt 6612356  T
Q  625 tgtgtct 631  Q
    |||||||    
T  6612357 tgtgtct 6612363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 39482685 - 39482777
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    |||||||||||| || ||||||||| |||||||||       ||||||||||   ||||||||||||||||||||||||||| | ||||||||    
T  39482685 actaattttacccttgaaatcaacacaattaatcattttcttaataatcgtgcacaaatcttaaacgactaatattgtgagacggagggagta 39482777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 45425710 - 45425631
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||||||||||| |||||||||       ||||||| ||  |||| ||||||||||||||||| |||||    
T  45425710 taattttaccattaaaatcaacacaattaatcattttcttaataatcatgcataaaacttaaacgactaatattatgaga 45425631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 6585539 - 6585571
Alignment:
Q  417 tatattgtaccaaacaagtctttaagtttattt 449  Q
    |||||||||||||||||||||||||||||||||    
T  6585539 tatattgtaccaaacaagtctttaagtttattt 6585571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 426
Target Start/End: Original strand, 6660905 - 6660935
Alignment:
Q  396 atagcaagatgttcttgatattatattgtac 426  Q
    |||||||||||||||||||||||||||||||    
T  6660905 atagcaagatgttcttgatattatattgtac 6660935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 426
Target Start/End: Original strand, 6741307 - 6741337
Alignment:
Q  396 atagcaagatgttcttgatattatattgtac 426  Q
    |||||||||||||||||||||||||||||||    
T  6741307 atagcaagatgttcttgatattatattgtac 6741337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 1875638 - 1875564
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatat 113  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| ||||||||||||||||    
T  1875638 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatat 1875564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 6582647 - 6582675
Alignment:
Q  396 atagcaagatgttcttgatattatattgt 424  Q
    |||||||||||||||||||||||||||||    
T  6582647 atagcaagatgttcttgatattatattgt 6582675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 32678788 - 32678873
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgca 124  Q
    |||| ||||||||| |||||||||| |||||||||       ||||||||||| ||||  ||||||||||| ||||  ||||||||    
T  32678788 actagttttaccatcaaaatcaacacaattaatcatttccttaataatcgtgtataaactttaaacgactattatttagagatgca 32678873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 36967433 - 36967506
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatatt 114  Q
    |||||||||||| |||||||||| |||||||||       ||||||||||  |||| |||||||||||| ||||    
T  36967433 taattttaccatcaaaatcaacacaattaatcatttccttaataatcgtgcataaaccttaaacgactattatt 36967506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 39405832 - 39405913
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||||||| |||| |||| |||| |||||||||       ||||||||||   ||| |||||||||||||||||||||||    
T  39405832 actaattttatcattgaaattaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatattgtgaga 39405913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 40028588 - 40028620
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||| |||||||||||||||||||    
T  40028588 taattttaccattgaaatcaacataattaatca 40028620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 136080 - 135990
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    ||||||||||||| |||||||||| ||||||||       ||||||||||  |||||||||||||||||||||||||||| | ||||||||    
T  136080 taattttaccattgaaatcaacattattaatcatttatttaataatcgtgcataaatcttaaacgactaatattgtgagacggagggagta 135990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 1774 - 1866
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    |||||||||||||| ||||||||||||||||||||       ||||| ||||| ||||||||||||||||| ||||  |||||| ||||||||    
T  1774 actaattttaccatcaaaatcaacataattaatcattttcttaataaccgtgtataaatcttaaacgactattatttagagatggagggagta 1866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 37312020 - 37312112
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||  |||| ||||||||||||||||||||||| | ||||||||    
T  37312020 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcataaaccttaaacgactaatattgtgagacgtagggagta 37312112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 8679099 - 8679029
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgacta 109  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||  |||||||||||||||||    
T  8679099 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcataaatcttaaacgacta 8679029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 27471405 - 27471495
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggag 129  Q
    |||||||| |||||| |||||||||||||||||||       ||||||||||   ||||||||||||| |||| |||||||| | ||||||    
T  27471405 actaatttcaccattgaaatcaacataattaatcattttcttaataatcgtgcacaaatcttaaacgattaatgttgtgagacggagggag 27471495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 45811727 - 45811759
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    |||||||||||||||||||||||||||||||||    
T  45811727 taattttaccattaaaatcaacataattaatca 45811759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 43253908 - 43253816
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| |||||||||  |||||||||||| | ||||||||    
T  43253908 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgatcaatattgtgagacggagggagta 43253816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 29024011 - 29023941
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgacta 109  Q
    |||||||||||||| |||||||||| |||||||||       ||||||||||  |||| ||||||||||||    
T  29024011 actaattttaccatcaaaatcaacacaattaatcatttttttaataatcgtgcataaaccttaaacgacta 29023941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 33491125 - 33491047
Alignment:
Q  42 aattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||||| ||| ||||||||| |||||||||       ||||||||||   ||| |||||||||||||||||||||||    
T  33491125 aattttactattgaaatcaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatattgtgaga 33491047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 43719338 - 43719370
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||||||||||||| |||||||||    
T  43719338 taattttaccattaaaatcaacacaattaatca 43719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 45710922 - 45710954
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    |||||||||||| ||||||||||||||||||||    
T  45710922 taattttaccatcaaaatcaacataattaatca 45710954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 29570464 - 29570545
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatg 122  Q
    |||||||| |||||||||||||| |||||||||       ||||||||||   |||||||||||||||||||||||||||||    
T  29570464 taattttaacattaaaatcaacacaattaatcatttctttaataatcgtgcacaaatcttaaacgactaatattgtgagatg 29570545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 9515816 - 9515897
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| |||||||||||||||||||||||    
T  9515816 actaattttaccattgaaatcaacacaattaatcattatcttaataatcgtgcacaaaccttaaacgactaatattgtgaga 9515897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 8698379 - 8698471
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| ||||||| || |||||||||||| | ||||||||    
T  8698379 actaattttaccattgaaatcaacacaattaatcatttctttaataatcgtgcacaaaccttaaacaacaaatattgtgagacggagggagta 8698471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 3348168 - 3348136
Alignment:
Q  39 actaattttaccattaaaatcaacataattaat 71  Q
    |||||||||||||| ||||||||||||||||||    
T  3348168 actaattttaccatcaaaatcaacataattaat 3348136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 15818523 - 15818450
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaata 112  Q
    ||||||||||||||| ||||||||| |||||| ||       ||||||||||  |||| |||||||||||||||    
T  15818523 actaattttaccattgaaatcaacacaattaaacatttccttaataatcgtgcataaaccttaaacgactaata 15818450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 7061715 - 7061634
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||| ||||||||| |||||||||       |||||||||||  ||| |||||||||||||||||||||||    
T  7061715 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgtacaaaccttaaacgactaatattgtgaga 7061634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 47464416 - 47464334
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagat 121  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| ||||||||||||||||||||||||    
T  47464416 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgctcaaaccttaaacgactaatattgtgagat 47464334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 43237313 - 43237394
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||| |||| |||| |||||||||       ||||||||||  |||| |||||||||||||||||||||||    
T  43237313 actaattttaccattgaaataaacacaattaatcatttccttaataatcgtgcataaaccttaaacgactaatattgtgaga 43237394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 35380384 - 35380350
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    |||||||||||||||||||||||||||||||||||    
T  35380384 actaattttaccattaaaatcaacataattaatca 35380350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 16821382 - 16821289
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagtac 132  Q
    |||||||||| |||| ||||||||| |||||||||       ||||||||||   ||| |||||||||||||| |||||||| | |||||||||    
T  16821382 actaattttatcattgaaatcaacacaattaatcattgcattaataatcgtgcacaaaccttaaacgactaattttgtgagacggagggagtac 16821289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 32884871 - 32884952
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||| ||||||| ||||||||| |||||||||       ||||||||||   ||| |||||||||||||||||||||||    
T  32884871 actaattctaccattgaaatcaacacaattaatcattttcttaataatcgtgcacaaaccttaaacgactaatattgtgaga 32884952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 33790782 - 33790689
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagtac 132  Q
    |||||||||||||| |||||||||| |||||||||       ||||||||||  |||| |||||||||||| ||||  |||| | |||||||||    
T  33790782 actaattttaccatcaaaatcaacacaattaatcattttcttaataatcgtgcataaaccttaaacgactattatttagagacgaagggagtac 33790689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 41711505 - 41711473
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    |||||||||||||||||||||||||||||||||    
T  41711505 taattttaccattaaaatcaacataattaatca 41711473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 44536246 - 44536166
Alignment:
Q  40 ctaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||||||||||||||||||||| |||||||||       ||||||||||  ||||  |||||| | |||||||||||||    
T  44536246 ctaattttaccattaaaatcaacacaattaatcatttccttaataatcgtgcataaactttaaacaattaatattgtgaga 44536166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 32469999 - 32469965
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||||||||||||||| |||||||||    
T  32469999 actaattttaccattaaaatcaacacaattaatca 32469965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 4972633 - 4972711
Alignment:
Q  42 aattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||| | ||| ||||||||| |||||||||       ||||||||||   |||||||||||||||||||||||||||    
T  4972633 aatttttcaattgaaatcaacacaattaatcatttcattaataatcgtgcacaaatcttaaacgactaatattgtgaga 4972711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 40122905 - 40122828
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgt 116  Q
    |||||||||| |||||||||||||  |||||||||       ||||||||||   ||| |||||||||||||||||||    
T  40122905 actaattttaacattaaaatcaacgcaattaatcatttccttaataatcgtgcacaaagcttaaacgactaatattgt 40122828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 43902326 - 43902358
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    |||||||| ||||||||||||||||||||||||    
T  43902326 taattttatcattaaaatcaacataattaatca 43902358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 54123711 - 54123743
Alignment:
Q  39 actaattttaccattaaaatcaacataattaat 71  Q
    |||||||||| ||||||||||||||||||||||    
T  54123711 actaattttatcattaaaatcaacataattaat 54123743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 12039152 - 12039235
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatg 122  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| |||||||||||||||||||||||||    
T  12039152 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatattgtgagatg 12039235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 24991699 - 24991608
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagtac 132  Q
    |||||||||| || ||||||||| |||||||||       |||||||||||  ||| ||||||||||||||||||||||| | |||||||||    
T  24991699 taattttaccgttgaaatcaacacaattaatcatttccttaataatcgtgtacaaaccttaaacgactaatattgtgagacggagggagtac 24991608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 28749061 - 28749154
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagtac 132  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   |||||||||| ||| |||||| ||||| | |||||||||    
T  28749061 actaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaaatcttaaatgacaaatattatgagacggagggagtac 28749154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 30754986 - 30754919
Alignment:
Q  42 aattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgacta 109  Q
    ||||||||| |||||||||||| |||||||||       ||||||||||  |||||||||||||||||    
T  30754986 aattttacccttaaaatcaacacaattaatcatttccttaataatcgtgcataaatcttaaacgacta 30754919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 36701991 - 36702025
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||||| |||||||||||||||||||    
T  36701991 actaattttaccattgaaatcaacataattaatca 36702025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 36718095 - 36718129
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||||| |||||||||||||||||||    
T  36718095 actaattttaccattgaaatcaacataattaatca 36718129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 917096 - 917128
Alignment:
Q  41 taattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||| |||||||||||||||||||    
T  917096 taattttaccatttaaatcaacataattaatca 917128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 22738778 - 22738859
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||| ||||| ||| |||||||||       ||||||||||  |||| |||||||||||||||||||||||    
T  22738778 actaattttaccattgaaatctacacaattaatcatttctttaataatcgtgcataaaccttaaacgactaatattgtgaga 22738859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 24516341 - 24516260
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||| |||| ||||||||||||| ||| |||||    
T  24516341 actaattttaccattgaaatcaacacaattaatcattttattaataatcgtgtataaaccttaaacgactaaaattatgaga 24516260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 27921065 - 27921099
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    |||||||||||||||||||||||||||||||||||    
T  27921065 actaattttaccattaaaatcaacataattaatca 27921099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 28103811 - 28103902
Alignment:
Q  40 ctaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    |||||||||||||| ||||||||| |||||||||       ||||||||||   ||| |||||||||| |||||||||||| | ||||||||    
T  28103811 ctaattttaccattgaaatcaacacaattaatcattttcttaataatcgtgcacaaaccttaaacgacaaatattgtgagacggagggagta 28103902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 44180282 - 44180357
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatatt 114  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||| |||| |||||||||||| ||||    
T  44180282 actaattttaccattgaaatcaacacaattaatcattttcttaataatcgtgtataaaccttaaacgactattatt 44180357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 7457473 - 7457439
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||||| |||||||||||||||||||    
T  7457473 actaattttaccattgaaatcaacataattaatca 7457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 29835466 - 29835432
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    ||||||||||||||| |||||||||||||||||||    
T  29835466 actaattttaccatttaaatcaacataattaatca 29835432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 16170 - 16249
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||||| |||||||||||||| |||||||||       ||||||||||   ||||||||||| |||||||||||||||    
T  16170 taattttatcattaaaatcaacacaattaatcatttccttaataatcgtgaacaaatcttaaactactaatattgtgaga 16249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 252574 - 252540
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatca 73  Q
    |||||||||||||||||||||||||||||||||||    
T  252574 actaattttaccattaaaatcaacataattaatca 252540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 3323329 - 3323250
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtga 118  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||   ||| |||||||||||||||||||||    
T  3323329 actaattttaccattgaaatcaacacaattaatcatttttataataatcgtgcacaaaccttaaacgactaatattgtga 3323250  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 16377697 - 16377618
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||||||||||  |||||||| |||||||||       ||||||||||   ||||||||||||| |||||||||||||    
T  16377697 taattttaccattgtaatcaacacaattaatcatttctttaataatcgtgcacaaatcttaaacgattaatattgtgaga 16377618  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 23142735 - 23142829
Alignment:
Q  37 ccactaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    |||||| |||||||||| ||||||||| |||||||||       ||||||||||  |||| ||||||  ||||||||||||||| | ||||||||    
T  23142735 ccactatttttaccattgaaatcaacacaattaatcattttcttaataatcgtggataaaccttaaataactaatattgtgagacggagggagta 23142829  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 32440689 - 32440597
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    |||||||||||||| |||||||||| |||||||||       ||||| ||||  ||||||||||||||||| ||||  |||| | ||||||||    
T  32440689 actaattttaccatcaaaatcaacacaattaatcatttcctaaataaccgtgcataaatcttaaacgactattatttagagacggagggagta 32440597  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 7764281 - 7764251
Alignment:
Q  41 taattttaccattaaaatcaacataattaat 71  Q
    |||||||||||||||||||||||||||||||    
T  7764281 taattttaccattaaaatcaacataattaat 7764251  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 15058185 - 15058268
Alignment:
Q  37 ccactaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    ||||||||||||||||| |||| ||| ||||||||||       ||||||||||   ||| |||||||||||||||||| ||||    
T  15058185 ccactaattttaccattgaaattaacttaattaatcattttcttaataatcgtgcacaaaccttaaacgactaatattgcgaga 15058268  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 6802003 - 6802093
Alignment:
Q  41 taattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgagatgcagggagta 131  Q
    |||||||||||| ||||||||||||||||||||       ||||| | ||  | ||||||||||||||| ||||  |||||| ||||||||    
T  6802003 taattttaccatcaaaatcaacataattaatcattttcttaataaccatgcatcaatcttaaacgactattatttagagatggagggagta 6802093  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 7072229 - 7072262
Alignment:
Q  38 cactaattttaccattaaaatcaacataattaat 71  Q
    |||||||||||||||||||||||||| |||||||    
T  7072229 cactaattttaccattaaaatcaacacaattaat 7072262  T

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Target: scaffold0095 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 50274 - 50355
Alignment:
Q  39 actaattttaccattaaaatcaacataattaatcannnnnnnaataatcgtgtgtaaatcttaaacgactaatattgtgaga 120  Q
    |||||||||| |||| |||| |||| |||||||||       ||||||||||   ||| |||||||||||||||||||||||    
T  50274 actaattttatcattgaaattaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatattgtgaga 50355  T

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